Wall clock time and date at job start Mon Mar 30 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00541 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99511 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46736 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46236 * 295.00019 * 15 14 13 17 17 C 1.53032 * 109.46241 * 175.01789 * 15 14 13 18 18 C 1.53117 * 109.28312 * 180.79270 * 17 15 14 19 19 C 1.53125 * 109.14927 * 57.67110 * 18 17 15 20 20 C 1.53037 * 109.27954 * 302.34574 * 19 18 17 21 21 N 1.46846 * 109.52667 * 59.17664 * 20 19 18 22 22 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 26 26 H 0.97003 * 120.00377 * 0.02562 * 13 11 10 27 27 H 1.08994 * 109.47121 * 299.99693 * 14 13 11 28 28 H 1.08994 * 109.47503 * 60.00345 * 14 13 11 29 29 H 1.08998 * 109.50733 * 300.75058 * 17 15 14 30 30 H 1.09001 * 109.50040 * 60.86594 * 17 15 14 31 31 H 1.08998 * 109.52887 * 297.77383 * 18 17 15 32 32 H 1.08993 * 109.58049 * 177.60016 * 18 17 15 33 33 H 1.08999 * 109.50571 * 182.40107 * 19 18 17 34 34 H 1.09002 * 109.53101 * 62.30022 * 19 18 17 35 35 H 1.09005 * 109.46105 * 299.16130 * 20 19 18 36 36 H 1.08998 * 109.46335 * 179.19946 * 20 19 18 37 37 H 1.00893 * 111.00111 * 174.16881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1150 -1.8975 0.0014 13 7 5.7741 -4.0923 0.0003 14 6 7.2145 -4.3600 0.0008 15 6 7.4523 -5.8714 0.0006 16 1 7.0793 -6.2979 0.9317 17 6 8.9515 -6.1517 -0.1242 18 6 9.1831 -7.6651 -0.1440 19 6 8.3958 -8.2786 -1.3052 20 6 6.9125 -7.9367 -1.1466 21 7 6.7438 -6.4780 -1.1338 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 3.3695 -3.3125 0.0002 26 1 5.1437 -4.8296 -0.0005 27 1 7.6659 -3.9206 -0.8887 28 1 7.6652 -3.9218 0.8912 29 1 9.3280 -5.7137 -1.0486 30 1 9.4754 -5.7147 0.7259 31 1 8.8420 -8.0982 0.7963 32 1 10.2454 -7.8704 -0.2756 33 1 8.5223 -9.3612 -1.2990 34 1 8.7634 -7.8746 -2.2485 35 1 6.5420 -8.3533 -0.2099 36 1 6.3511 -8.3600 -1.9794 37 1 5.7666 -6.2271 -1.1256 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260837689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:09 Heat of formation + Delta-G solvation = -69.136805 kcal Electronic energy + Delta-G solvation = -17182.053723 eV Core-core repulsion = 14378.408557 eV Total energy + Delta-G solvation = -2803.645166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04542 -39.63640 -36.33019 -35.70032 -34.40052 -32.88749 -32.29002 -29.83267 -27.09815 -24.57710 -23.91178 -22.53783 -21.89001 -20.64525 -19.94962 -18.41750 -17.60550 -17.14293 -16.74269 -16.31801 -15.92820 -15.44082 -15.21490 -14.91880 -14.69215 -14.41495 -14.33081 -14.01857 -13.65910 -13.43184 -13.04240 -12.89412 -12.67880 -12.07117 -11.91510 -11.66544 -11.64705 -11.47738 -11.29219 -11.20933 -10.90701 -10.32373 -9.65634 -9.40214 -8.38884 -6.45579 1.34798 1.36529 1.50112 1.84269 2.21315 2.30103 2.96869 3.11635 3.48258 3.73674 3.92164 4.05203 4.17092 4.32068 4.40717 4.57791 4.64490 4.77413 4.79870 4.86616 4.94166 5.01168 5.06634 5.11393 5.24561 5.26093 5.30031 5.47929 5.51065 5.55885 5.96257 6.08171 6.26640 6.39354 6.56370 7.14673 7.25833 7.66398 8.75836 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.055600 B = 0.004025 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.480220 B = 6954.824770 C = 7338.222208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.251 3.749 10 N -0.721 5.721 11 C 0.695 3.305 12 O -0.645 6.645 13 N -0.730 5.730 14 C 0.147 3.853 15 C 0.089 3.911 16 H 0.052 0.948 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.118 4.118 20 C 0.056 3.944 21 N -0.695 5.695 22 H 0.272 0.728 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.405 0.595 26 H 0.405 0.595 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.529 -18.116 -0.171 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.394 3.606 12 O -0.527 6.527 13 N -0.388 5.388 14 C 0.022 3.978 15 C -0.021 4.021 16 H 0.070 0.930 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.073 4.073 21 N -0.329 5.329 22 H 0.082 0.918 23 H 0.028 0.972 24 H 0.026 0.974 25 H 0.240 0.760 26 H 0.241 0.759 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 17.584 -17.056 -0.605 24.505 hybrid contribution -1.297 0.106 0.648 1.453 sum 16.287 -16.950 0.043 23.507 Atomic orbital electron populations 1.69978 1.07657 1.28619 1.50769 1.25577 0.95542 1.02646 0.93580 0.85853 0.79240 0.79298 0.79472 1.18994 1.19742 1.18517 1.21274 0.89855 0.94612 1.52575 0.92218 1.18952 0.93048 0.79854 0.95493 1.45089 1.04576 1.09905 1.77903 1.16210 0.82685 0.83822 0.77847 1.90833 1.56259 1.45027 1.60621 1.44862 1.08713 1.04955 1.80266 1.21310 0.79278 0.95568 1.01598 1.21649 0.96518 0.91376 0.92597 0.92985 1.21578 0.93142 0.97428 1.02828 1.21557 1.00895 0.94309 0.98753 1.21612 0.94219 1.00845 0.98926 1.21999 0.97724 0.86756 1.00812 1.60298 1.17335 1.10656 1.44658 0.91829 0.97177 0.97351 0.76001 0.75855 0.92600 0.91851 0.91632 0.90415 0.91726 0.90658 0.90224 0.92029 0.94615 0.90120 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 2 C 0.03 1.53 5.47 84.65 0.46 1.99 16 3 Si 0.94 44.63 27.47 68.60 1.88 46.52 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.39 6.54 99.48 0.65 -11.73 16 7 C -0.55 -30.46 9.83 25.60 0.25 -30.21 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 9 C 0.25 12.65 4.50 85.63 0.38 13.04 16 10 N -0.72 -29.80 5.55 -482.29 -2.68 -32.48 16 11 C 0.69 27.52 8.57 179.05 1.53 29.05 16 12 O -0.64 -31.23 16.34 -3.98 -0.07 -31.30 16 13 N -0.73 -20.24 5.26 -478.53 -2.52 -22.76 16 14 C 0.15 3.61 5.37 86.38 0.46 4.07 16 15 C 0.09 1.56 2.68 44.94 0.12 1.68 16 16 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 17 C -0.11 -1.70 5.37 30.64 0.16 -1.54 16 18 C -0.12 -1.43 6.00 30.68 0.18 -1.25 16 19 C -0.12 -1.47 6.09 30.65 0.19 -1.29 16 20 C 0.06 0.77 6.55 86.33 0.57 1.33 16 21 N -0.70 -12.12 6.50 -491.66 -3.20 -15.31 16 22 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 23 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 24 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 25 H 0.40 14.44 8.33 -92.71 -0.77 13.66 16 26 H 0.41 8.60 7.12 -92.71 -0.66 7.94 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.04 0.45 8.14 -2.38 -0.02 0.44 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.34 5.78 7.07 -89.70 -0.63 5.15 16 Total: -1.00 -69.65 299.26 -3.00 -72.64 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -1.04 Total: 21.42 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 4.32 Total: 16.90 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -8.09 Total: -126.17 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.07 Total: -31.30 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -69.65 -3.00 -72.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260837689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.505 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds