Wall clock time and date at job start Mon Mar 30 2020 04:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.47844 * 110.99932 * 2 1 4 4 C 1.54904 * 104.79256 * 146.36583 * 3 2 1 5 5 C 1.55401 * 101.74440 * 323.01680 * 4 3 2 6 6 C 1.47442 * 110.99752 * 120.84453 * 2 1 3 7 7 H 1.09004 * 109.88745 * 117.17113 * 6 2 1 8 8 C 1.52997 * 109.89086 * 356.14763 * 6 2 1 9 9 N 1.46499 * 109.46935 * 176.48210 * 8 6 2 10 10 C 1.34777 * 119.99937 * 184.66120 * 9 8 6 11 11 O 1.21593 * 120.00134 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00154 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99944 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47284 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99573 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00347 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99900 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46893 * 60.00281 * 18 16 14 20 20 H 1.48500 * 109.47191 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47159 * 300.00361 * 18 16 14 22 22 H 1.09007 * 109.46591 * 297.77830 * 1 2 3 23 23 H 1.08999 * 109.46790 * 57.77569 * 1 2 3 24 24 H 1.08990 * 109.47196 * 177.78202 * 1 2 3 25 25 H 1.09003 * 110.37568 * 265.19512 * 3 2 1 26 26 H 1.09004 * 110.37417 * 27.42681 * 3 2 1 27 27 H 1.09003 * 110.99050 * 81.02276 * 4 3 2 28 28 H 1.09001 * 110.98991 * 204.79925 * 4 3 2 29 29 H 1.09001 * 110.67529 * 277.17859 * 5 4 3 30 30 H 1.09003 * 110.84430 * 153.85897 * 5 4 3 31 31 H 1.09000 * 109.46816 * 296.48441 * 8 6 2 32 32 H 1.08996 * 109.47576 * 56.47907 * 8 6 2 33 33 H 0.97000 * 120.00145 * 4.66728 * 9 8 6 34 34 H 0.97000 * 119.99928 * 0.02562 * 12 10 9 35 35 H 1.08996 * 109.47523 * 300.00079 * 13 12 10 36 36 H 1.08998 * 109.47230 * 60.00418 * 13 12 10 37 37 H 0.97006 * 119.99926 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9183 0.2788 1.9329 6 6 1.9974 -0.7058 1.1818 7 1 2.5673 -1.5802 0.8675 8 6 0.8438 -1.1356 2.0902 9 7 1.3718 -1.9081 3.2175 10 6 0.5263 -2.4732 4.1020 11 8 -0.6747 -2.3422 3.9641 12 7 1.0120 -3.1843 5.1389 13 6 0.0929 -3.7989 6.0999 14 6 0.8835 -4.5316 7.1531 15 1 1.9627 -4.5384 7.1109 16 6 0.2292 -5.1925 8.1710 17 7 -1.0849 -5.1839 8.2226 18 14 1.2093 -6.1001 9.4768 19 1 2.0977 -5.1427 10.1835 20 1 0.2777 -6.7233 10.4510 21 1 2.0316 -7.1563 8.8336 22 1 -0.3633 0.4790 0.9093 23 1 -0.3633 0.5480 -0.8694 24 1 -0.3633 -1.0268 -0.0398 25 1 2.2148 1.7039 -1.0182 26 1 1.2882 2.0596 0.4707 27 1 4.1303 0.9281 0.2242 28 1 3.5500 2.2720 1.2634 29 1 2.3784 0.7706 2.7421 30 1 3.8019 -0.2337 2.3132 31 1 0.3279 -0.2517 2.4653 32 1 0.1450 -1.7510 1.5236 33 1 2.3298 -2.0128 3.3274 34 1 1.9700 -3.2890 5.2487 35 1 -0.5109 -3.0240 6.5720 36 1 -0.5589 -4.5017 5.5810 37 1 -1.5452 -5.6491 8.9386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260879696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:13 Heat of formation + Delta-G solvation = -27.567549 kcal Electronic energy + Delta-G solvation = -17285.571734 eV Core-core repulsion = 14483.729147 eV Total energy + Delta-G solvation = -2801.842588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97339 -38.74316 -34.51907 -33.90455 -32.42673 -32.24582 -29.87611 -27.11433 -25.80800 -24.87983 -22.45633 -21.50685 -20.16491 -19.85445 -18.01507 -16.77525 -16.12158 -15.73075 -15.33818 -14.98429 -14.65027 -14.28676 -13.83084 -13.73370 -13.23931 -12.91167 -12.82011 -12.39826 -11.93928 -11.75872 -11.62018 -11.55537 -11.35060 -10.98244 -10.95541 -10.89694 -10.82713 -10.28768 -9.42144 -9.36755 -8.80260 -8.68305 -8.47742 -7.73654 -6.13616 -4.20301 3.26343 3.26935 3.32094 3.35169 3.88308 3.97147 4.34533 4.35496 4.44959 4.61326 4.93310 5.14160 5.15343 5.16982 5.22310 5.29102 5.36777 5.40537 5.57990 5.63860 5.68422 5.77651 5.88811 5.93007 6.11363 6.67006 6.78007 6.91895 7.13466 7.53432 7.56817 7.59183 7.92744 8.06305 8.78143 8.96407 9.35199 9.49992 10.96640 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053068 B = 0.003995 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.497792 B = 7007.467898 C = 7402.601954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.524 5.524 3 C 0.038 3.962 4 C -0.129 4.129 5 C -0.140 4.140 6 C 0.060 3.940 7 H 0.092 0.908 8 C 0.127 3.873 9 N -0.755 5.755 10 C 0.693 3.307 11 O -0.602 6.602 12 N -0.729 5.729 13 C 0.267 3.733 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.391 0.609 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 11.659 -14.576 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.248 5.248 3 C -0.089 4.089 4 C -0.167 4.167 5 C -0.179 4.179 6 C -0.049 4.049 7 H 0.110 0.890 8 C 0.001 3.999 9 N -0.413 5.413 10 C 0.392 3.608 11 O -0.481 6.481 12 N -0.381 5.381 13 C 0.146 3.854 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.224 0.776 34 H 0.218 0.782 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.100 11.429 -15.017 20.536 hybrid contribution 1.002 -0.198 1.587 1.887 sum 9.102 11.231 -13.430 19.732 Atomic orbital electron populations 1.22659 0.87470 1.02989 1.00917 1.63798 1.08474 1.14219 1.38276 1.23108 0.95700 0.89575 1.00541 1.22733 0.97637 0.99403 0.96948 1.22960 0.99840 0.97012 0.98069 1.22685 0.95254 0.97884 0.89056 0.88961 1.21712 0.95732 0.95543 0.86871 1.45069 1.08913 1.58438 1.28887 1.16148 0.85281 0.79212 0.80138 1.90869 1.13612 1.66575 1.77063 1.45707 1.10634 1.54588 1.27200 1.18970 0.88506 0.92533 0.85407 1.21195 0.93244 1.33704 1.09948 0.91999 1.24944 0.94972 0.96212 0.97886 1.69972 1.07078 1.42309 1.32969 0.86468 0.79592 0.79820 0.80961 1.20103 1.21080 1.20083 0.94428 0.91467 0.90493 0.90141 0.93438 0.90612 0.90789 0.90862 0.90408 0.92308 0.90968 0.77628 0.78187 0.95789 0.95750 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 8.26 60.07 0.50 0.58 16 2 N -0.52 -5.41 5.44 -231.56 -1.26 -6.67 16 3 C 0.04 0.33 6.73 -2.30 -0.02 0.31 16 4 C -0.13 -1.00 7.08 -24.45 -0.17 -1.17 16 5 C -0.14 -1.26 6.03 -24.77 -0.15 -1.41 16 6 C 0.06 0.63 3.52 -66.73 -0.23 0.39 16 7 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 8 C 0.13 1.72 3.72 -4.04 -0.02 1.71 16 9 N -0.75 -11.49 5.40 -65.23 -0.35 -11.84 16 10 C 0.69 14.65 8.57 -86.92 -0.74 13.90 16 11 O -0.60 -15.44 16.34 5.28 0.09 -15.36 16 12 N -0.73 -15.89 5.55 -66.42 -0.37 -16.26 16 13 C 0.27 7.27 5.43 -5.20 -0.03 7.24 16 14 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 18 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H 0.04 0.40 6.51 -51.92 -0.34 0.06 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.82 6.72 -51.93 -0.35 0.47 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.40 7.80 -51.93 -0.40 0.00 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.86 6.85 -51.93 -0.36 0.50 16 32 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 33 H 0.39 4.73 8.22 -40.82 -0.34 4.39 16 34 H 0.39 7.15 8.34 -40.82 -0.34 6.81 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -32.96 300.61 -8.71 -41.67 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.78 Total: 5.63 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -1.28 Total: 8.00 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -1.25 Total: -60.43 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.09 Total: -15.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.96 -8.71 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260879696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.103 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds