Wall clock time and date at job start Mon Mar 30 2020 04:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.47844 * 110.99932 * 2 1 4 4 C 1.54904 * 104.79256 * 146.36583 * 3 2 1 5 5 C 1.55401 * 101.74440 * 323.01680 * 4 3 2 6 6 C 1.47442 * 110.99752 * 120.84453 * 2 1 3 7 7 H 1.09004 * 109.88745 * 117.17113 * 6 2 1 8 8 C 1.52997 * 109.89086 * 356.14763 * 6 2 1 9 9 N 1.46499 * 109.46935 * 176.48210 * 8 6 2 10 10 C 1.34777 * 119.99937 * 184.66120 * 9 8 6 11 11 O 1.21593 * 120.00134 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00154 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99944 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47284 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99573 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00347 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99900 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46893 * 60.00281 * 18 16 14 20 20 H 1.48500 * 109.47191 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47159 * 300.00361 * 18 16 14 22 22 H 1.09007 * 109.46591 * 297.77830 * 1 2 3 23 23 H 1.08999 * 109.46790 * 57.77569 * 1 2 3 24 24 H 1.08990 * 109.47196 * 177.78202 * 1 2 3 25 25 H 1.09003 * 110.37568 * 265.19512 * 3 2 1 26 26 H 1.09004 * 110.37417 * 27.42681 * 3 2 1 27 27 H 1.09003 * 110.99050 * 81.02276 * 4 3 2 28 28 H 1.09001 * 110.98991 * 204.79925 * 4 3 2 29 29 H 1.09001 * 110.67529 * 277.17859 * 5 4 3 30 30 H 1.09003 * 110.84430 * 153.85897 * 5 4 3 31 31 H 1.09000 * 109.46816 * 296.48441 * 8 6 2 32 32 H 1.08996 * 109.47576 * 56.47907 * 8 6 2 33 33 H 0.97000 * 120.00145 * 4.66728 * 9 8 6 34 34 H 0.97000 * 119.99928 * 0.02562 * 12 10 9 35 35 H 1.08996 * 109.47523 * 300.00079 * 13 12 10 36 36 H 1.08998 * 109.47230 * 60.00418 * 13 12 10 37 37 H 0.97006 * 119.99926 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9183 0.2788 1.9329 6 6 1.9974 -0.7058 1.1818 7 1 2.5673 -1.5802 0.8675 8 6 0.8438 -1.1356 2.0902 9 7 1.3718 -1.9081 3.2175 10 6 0.5263 -2.4732 4.1020 11 8 -0.6747 -2.3422 3.9641 12 7 1.0120 -3.1843 5.1389 13 6 0.0929 -3.7989 6.0999 14 6 0.8835 -4.5316 7.1531 15 1 1.9627 -4.5384 7.1109 16 6 0.2292 -5.1925 8.1710 17 7 -1.0849 -5.1839 8.2226 18 14 1.2093 -6.1001 9.4768 19 1 2.0977 -5.1427 10.1835 20 1 0.2777 -6.7233 10.4510 21 1 2.0316 -7.1563 8.8336 22 1 -0.3633 0.4790 0.9093 23 1 -0.3633 0.5480 -0.8694 24 1 -0.3633 -1.0268 -0.0398 25 1 2.2148 1.7039 -1.0182 26 1 1.2882 2.0596 0.4707 27 1 4.1303 0.9281 0.2242 28 1 3.5500 2.2720 1.2634 29 1 2.3784 0.7706 2.7421 30 1 3.8019 -0.2337 2.3132 31 1 0.3279 -0.2517 2.4653 32 1 0.1450 -1.7510 1.5236 33 1 2.3298 -2.0128 3.3274 34 1 1.9700 -3.2890 5.2487 35 1 -0.5109 -3.0240 6.5720 36 1 -0.5589 -4.5017 5.5810 37 1 -1.5452 -5.6491 8.9386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260879696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:13 Heat of formation + Delta-G solvation = -54.311059 kcal Electronic energy + Delta-G solvation = -17286.731420 eV Core-core repulsion = 14483.729147 eV Total energy + Delta-G solvation = -2803.002273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19368 -40.09755 -36.26900 -35.58792 -34.32130 -33.12976 -31.03856 -29.02177 -26.60353 -26.09735 -24.41651 -22.32441 -21.75943 -20.87198 -19.71349 -18.06180 -17.81303 -17.00140 -16.65443 -16.41888 -16.24612 -15.45286 -15.25786 -14.87176 -14.71338 -14.20029 -14.01548 -13.87885 -13.58571 -13.24651 -12.90853 -12.66931 -12.40579 -12.30890 -12.22656 -12.01388 -11.85333 -11.60806 -11.49600 -11.30606 -10.79090 -10.32231 -9.62916 -9.32637 -8.27656 -6.44481 1.44141 1.48870 1.56792 1.82752 2.21615 2.40197 3.00851 3.07258 3.52598 3.57273 3.74871 3.78279 4.19280 4.25633 4.36486 4.49574 4.53931 4.60489 4.69737 4.93785 4.98774 5.00426 5.06413 5.08894 5.17100 5.26768 5.32627 5.46326 5.49272 5.66606 5.85034 5.94779 5.99746 6.24489 6.67054 7.24568 7.30297 7.70179 8.84600 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053068 B = 0.003995 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.497792 B = 7007.467898 C = 7402.601954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.530 5.530 3 C 0.034 3.966 4 C -0.122 4.122 5 C -0.140 4.140 6 C 0.068 3.932 7 H 0.099 0.901 8 C 0.130 3.870 9 N -0.727 5.727 10 C 0.691 3.309 11 O -0.651 6.651 12 N -0.721 5.721 13 C 0.285 3.715 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.261 1.261 20 H -0.286 1.286 21 H -0.262 1.262 22 H 0.027 0.973 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.411 0.589 34 H 0.405 0.595 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.234 11.940 -14.772 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.255 5.255 3 C -0.093 4.093 4 C -0.160 4.160 5 C -0.178 4.178 6 C -0.041 4.041 7 H 0.117 0.883 8 C 0.005 3.995 9 N -0.386 5.386 10 C 0.390 3.610 11 O -0.534 6.534 12 N -0.375 5.375 13 C 0.162 3.838 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.186 1.186 22 H 0.045 0.955 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.248 0.752 34 H 0.241 0.759 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.137 11.744 -15.264 22.247 hybrid contribution 0.041 -0.218 1.548 1.564 sum 11.178 11.526 -13.716 21.117 Atomic orbital electron populations 1.22630 0.87711 1.02453 1.01129 1.63864 1.08326 1.15484 1.37778 1.23223 0.96118 0.88435 1.01548 1.22732 0.97275 0.99701 0.96290 1.22972 0.99844 0.97013 0.98016 1.22654 0.94058 0.98715 0.88685 0.88311 1.21816 0.96999 0.94381 0.86327 1.44785 1.09313 1.56791 1.27672 1.16324 0.85103 0.79082 0.80496 1.90838 1.16176 1.68185 1.78198 1.45279 1.10901 1.54615 1.26725 1.18412 0.88759 0.90719 0.85955 1.21579 0.94345 1.33578 1.09896 0.89713 1.26081 0.96003 0.96985 1.00532 1.70143 1.09373 1.43409 1.34092 0.85175 0.77879 0.78562 0.77379 1.18601 1.21125 1.18623 0.95488 0.89912 0.91559 0.88924 0.93604 0.89673 0.89448 0.92011 0.88735 0.93422 0.92532 0.75239 0.75910 0.99714 0.99713 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.26 127.69 1.05 1.23 16 2 N -0.53 -10.15 5.44 -886.52 -4.83 -14.98 16 3 C 0.03 0.51 6.73 86.77 0.58 1.09 16 4 C -0.12 -1.52 7.08 32.07 0.23 -1.30 16 5 C -0.14 -2.16 6.03 31.87 0.19 -1.97 16 6 C 0.07 1.31 3.52 45.26 0.16 1.47 16 7 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 8 C 0.13 3.50 3.72 86.38 0.32 3.82 16 9 N -0.73 -21.57 5.40 -478.54 -2.58 -24.16 16 10 C 0.69 29.60 8.57 179.05 1.53 31.13 16 11 O -0.65 -34.76 16.34 -4.01 -0.07 -34.82 16 12 N -0.72 -31.64 5.55 -482.30 -2.68 -34.31 16 13 C 0.28 16.07 5.43 85.63 0.46 16.53 16 14 C -0.56 -30.56 9.28 25.60 0.24 -30.32 16 15 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 18 Si 0.99 42.37 29.54 68.60 2.03 44.40 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H 0.03 0.58 6.51 -2.38 -0.02 0.57 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.45 6.72 -2.39 -0.02 1.43 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 0.71 7.80 -2.38 -0.02 0.69 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.12 7.79 -2.39 -0.02 1.10 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.41 6.85 -2.39 -0.02 1.40 16 32 H 0.06 1.73 6.39 -2.39 -0.02 1.71 16 33 H 0.41 9.05 8.22 -92.71 -0.76 8.28 16 34 H 0.41 14.46 8.34 -92.71 -0.77 13.69 16 35 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 37 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -73.37 300.61 -3.07 -76.44 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.46 Total: 21.57 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 5.24 Total: 22.35 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -9.80 Total: -129.94 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.07 Total: -34.82 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -73.37 -3.07 -76.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260879696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.127 kcal (2) G-P(sol) polarization free energy of solvation -73.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds