Wall clock time and date at job start Mon Mar 30 2020 04:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99891 * 2 1 4 4 C 1.53003 * 109.47173 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46840 * 65.00466 * 4 3 2 6 6 C 1.46495 * 119.99754 * 269.99774 * 5 4 3 7 7 C 1.50699 * 109.47465 * 95.55206 * 6 5 4 8 8 H 1.08004 * 119.99746 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00275 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00315 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00047 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47266 * 59.99661 * 11 9 7 13 13 H 1.48502 * 109.47231 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46819 * 299.99920 * 11 9 7 15 15 C 1.37478 * 120.00308 * 90.00307 * 5 4 3 16 16 N 1.29320 * 122.86492 * 321.98378 * 15 5 4 17 17 C 1.46951 * 110.08487 * 180.02562 * 16 15 5 18 18 C 1.54160 * 104.01175 * 359.97438 * 17 16 15 19 19 N 1.36784 * 122.87436 * 141.69596 * 15 5 4 20 20 C 1.46504 * 125.80869 * 359.97438 * 19 15 5 21 21 H 1.08997 * 109.47472 * 59.99961 * 1 2 3 22 22 H 1.09008 * 109.47225 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47204 * 299.99625 * 1 2 3 24 24 H 1.09002 * 109.47052 * 60.00526 * 3 2 1 25 25 H 1.09000 * 109.47274 * 300.00494 * 3 2 1 26 26 H 1.09004 * 109.46944 * 185.00366 * 4 3 2 27 27 H 1.08996 * 109.47217 * 305.00203 * 4 3 2 28 28 H 1.09001 * 109.47432 * 215.55310 * 6 5 4 29 29 H 1.08998 * 109.47342 * 335.55013 * 6 5 4 30 30 H 0.97003 * 120.00484 * 179.97438 * 10 9 7 31 31 H 1.09000 * 110.52368 * 118.63576 * 17 16 15 32 32 H 1.09009 * 110.51953 * 241.22771 * 17 16 15 33 33 H 1.08997 * 110.65978 * 118.44632 * 18 17 16 34 34 H 1.09003 * 110.66337 * 241.55962 * 18 17 16 35 35 H 1.08996 * 109.47150 * 84.44875 * 20 19 15 36 36 H 1.09006 * 109.46798 * 204.44336 * 20 19 15 37 37 H 1.08994 * 109.47537 * 324.44572 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8919 -1.3429 7 6 2.8453 -1.4729 -1.9312 8 1 2.0297 -0.8223 -2.2104 9 6 2.7341 -2.8349 -2.1138 10 7 3.7277 -3.6272 -1.7752 11 14 1.1726 -3.5551 -2.8437 12 1 0.9550 -2.9922 -4.2006 13 1 1.3039 -5.0315 -2.9349 14 1 0.0172 -3.2141 -1.9752 15 6 4.2672 1.3493 -2.3433 16 7 3.5876 2.4062 -2.6491 17 6 4.1391 3.0276 -3.8612 18 6 5.3217 2.1154 -4.2432 19 7 5.3043 1.0823 -3.1942 20 6 6.2367 -0.0423 -3.0827 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6886 1.8463 0.8901 25 1 1.6885 1.8464 -0.8899 26 1 3.9785 2.1766 0.0890 27 1 3.8515 0.5682 0.8409 28 1 4.9530 -1.1426 -1.9804 29 1 4.2651 -1.3048 -0.3469 30 1 3.6494 -4.5855 -1.9033 31 1 3.3939 3.0411 -4.6566 32 1 4.4872 4.0383 -3.6480 33 1 5.1637 1.6724 -5.2265 34 1 6.2596 2.6701 -4.2164 35 1 5.7996 -0.9244 -3.5507 36 1 7.1712 0.2096 -3.5842 37 1 6.4329 -0.2487 -2.0307 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308861995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:35 Heat of formation + Delta-G solvation = 22.251108 kcal Electronic energy + Delta-G solvation = -18662.949332 eV Core-core repulsion = 15863.267043 eV Total energy + Delta-G solvation = -2799.682289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.48229 -37.17927 -35.18905 -32.79985 -32.22466 -29.60368 -28.45532 -26.56272 -25.79567 -25.10608 -22.51811 -21.74994 -21.46439 -18.38935 -16.51397 -16.00846 -15.59114 -15.33513 -15.00882 -14.61498 -14.23162 -13.94025 -13.67009 -13.26867 -13.03542 -12.44956 -12.20405 -11.91761 -11.70354 -11.47049 -11.36915 -11.12942 -10.93659 -10.75896 -10.48456 -10.40648 -10.07063 -9.81760 -9.29471 -8.99348 -8.70136 -8.26181 -7.40779 -6.82515 -5.87166 -3.86098 3.39508 3.42819 3.44390 3.49014 3.56518 4.42509 4.58680 4.67153 5.13424 5.43863 5.47110 5.51550 5.72597 5.77136 5.81672 5.91723 6.00063 6.05444 6.06308 6.08051 6.18481 6.32872 6.35485 6.38670 6.41523 6.67629 7.10168 7.21058 7.36944 7.72166 8.01842 8.07142 8.16556 8.45261 8.87402 9.03561 9.24963 9.75371 11.19443 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.010660 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.254162 B = 2626.127766 C = 3389.502279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.043 3.957 4 C 0.159 3.841 5 N -0.606 5.606 6 C 0.248 3.752 7 C -0.487 4.487 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.908 5.908 11 Si 0.890 3.110 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.627 3.373 16 N -0.648 5.648 17 C 0.046 3.954 18 C 0.090 3.910 19 N -0.654 5.654 20 C 0.115 3.885 21 H 0.030 0.970 22 H 0.077 0.923 23 H 0.024 0.976 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.259 0.741 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 9.197 0.165 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C -0.036 4.036 4 C 0.034 3.966 5 N -0.329 5.329 6 C 0.128 3.872 7 C -0.527 4.527 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.550 5.550 11 Si 0.719 3.281 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.266 3.734 16 N -0.390 5.390 17 C -0.086 4.086 18 C -0.035 4.035 19 N -0.381 5.381 20 C -0.028 4.028 21 H 0.049 0.951 22 H 0.095 0.905 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.801 9.212 0.475 9.398 hybrid contribution -0.565 -0.718 -0.981 1.341 sum 1.236 8.494 -0.506 8.598 Atomic orbital electron populations 1.22560 0.83444 1.01789 0.98220 1.88284 1.17323 1.25968 1.94875 1.23027 0.95507 0.85787 0.99255 1.21071 0.92026 0.97236 0.86250 1.45900 1.72876 1.06539 1.07558 1.19593 0.97658 0.71975 0.97945 1.21508 1.01170 0.91509 1.38486 0.92009 1.24850 0.96186 0.97022 0.96408 1.69906 1.31376 1.03919 1.49768 0.86687 0.84383 0.77479 0.79514 1.20781 1.21686 1.20403 1.19458 0.82639 0.87578 0.83733 1.74615 1.29364 1.16224 1.18816 1.22657 0.93851 0.97348 0.94708 1.22365 0.99766 0.90100 0.91266 1.47993 1.31507 1.29065 1.29519 1.21533 0.90939 0.88145 1.02176 0.95110 0.90470 0.95722 0.95012 0.92260 0.91201 0.90952 0.94150 0.95108 0.93192 0.91480 0.91922 0.92096 0.92087 0.92181 0.92798 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.01 101.05 1.11 1.79 16 2 O -0.35 -7.53 8.04 -35.23 -0.28 -7.81 16 3 C 0.04 0.81 6.28 37.16 0.23 1.05 16 4 C 0.16 3.00 5.92 -4.04 -0.02 2.98 16 5 N -0.61 -13.23 2.46 -177.31 -0.44 -13.67 16 6 C 0.25 6.17 4.82 -5.20 -0.03 6.14 16 7 C -0.49 -13.52 7.70 -34.44 -0.27 -13.78 16 8 H 0.06 1.82 7.14 -52.48 -0.37 1.44 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.91 -26.34 13.29 55.43 0.74 -25.61 16 11 Si 0.89 22.27 29.54 -169.99 -5.02 17.24 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.63 13.29 7.51 -322.33 -2.42 10.87 16 16 N -0.65 -13.45 10.94 -61.28 -0.67 -14.12 16 17 C 0.05 0.77 8.04 -3.19 -0.03 0.74 16 18 C 0.09 1.41 7.76 -3.03 -0.02 1.39 16 19 N -0.65 -12.35 3.45 -182.51 -0.63 -12.98 16 20 C 0.12 1.99 9.22 59.85 0.55 2.54 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.22 7.71 -51.93 -0.40 0.82 16 26 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 27 H 0.07 1.31 7.86 -51.93 -0.41 0.91 16 28 H 0.04 1.02 3.75 -51.93 -0.19 0.82 16 29 H 0.03 0.82 7.83 -51.93 -0.41 0.42 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.17 7.38 -51.93 -0.38 0.79 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.24 6.88 -51.93 -0.36 0.89 16 LS Contribution 300.93 15.07 4.53 4.53 Total: -1.00 -31.32 300.93 -8.63 -39.95 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.88 Total: -2.71 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -0.98 Total: 15.16 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -1.00 Total: -66.37 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.28 Total: -7.81 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.32 -8.63 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308861995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.206 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds