Wall clock time and date at job start Mon Mar 30 2020 03:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00194 * 2 1 4 4 C 1.53000 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46992 * 64.99670 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99905 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00302 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47082 * 89.99861 * 11 9 7 13 13 H 1.48492 * 109.47090 * 210.00394 * 11 9 7 14 14 H 1.48499 * 109.46812 * 330.00449 * 11 9 7 15 15 C 1.37477 * 119.99967 * 269.72185 * 5 4 3 16 16 N 1.29316 * 122.87300 * 359.71215 * 15 5 4 17 17 C 1.46941 * 110.09109 * 179.87265 * 16 15 5 18 18 H 1.09001 * 110.34972 * 118.90802 * 17 16 15 19 19 C 1.53005 * 110.69631 * 241.64398 * 17 16 15 20 20 C 1.54167 * 104.00939 * 0.36038 * 17 16 15 21 21 N 1.36789 * 122.86797 * 180.02562 * 15 5 4 22 22 H 1.09005 * 109.47031 * 300.00496 * 1 2 3 23 23 H 1.08996 * 109.47115 * 59.99818 * 1 2 3 24 24 H 1.08998 * 109.47832 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47320 * 59.99819 * 3 2 1 26 26 H 1.08998 * 109.46759 * 299.99542 * 3 2 1 27 27 H 1.09000 * 109.46884 * 305.00285 * 4 3 2 28 28 H 1.09000 * 109.46955 * 184.99601 * 4 3 2 29 29 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 30 30 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 31 31 H 0.96998 * 119.99775 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.47117 * 174.68779 * 19 17 16 33 33 H 1.08998 * 109.46660 * 294.69061 * 19 17 16 34 34 H 1.09001 * 109.47106 * 54.68791 * 19 17 16 35 35 H 1.08999 * 110.66000 * 241.34742 * 20 17 16 36 36 H 1.09004 * 110.65839 * 118.24269 * 20 17 16 37 37 H 0.97001 * 125.81425 * 359.97082 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2864 1.4004 -2.4149 7 6 5.7443 1.7807 -2.3846 8 1 6.3761 1.4346 -1.5800 9 6 6.2713 2.5715 -3.3836 10 7 7.5435 2.9038 -3.3570 11 14 5.1784 3.1708 -4.7750 12 1 4.5739 4.4752 -4.4029 13 1 5.9909 3.3351 -6.0070 14 1 4.1014 2.1784 -5.0209 15 6 4.1026 -0.8022 -1.3354 16 7 3.8537 -1.5916 -0.3419 17 6 4.0770 -2.9886 -0.7390 18 1 4.8589 -3.4367 -0.1258 19 6 2.7812 -3.7951 -0.6316 20 6 4.5324 -2.8907 -2.2086 21 7 4.5090 -1.4425 -2.4739 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.6887 1.8464 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 3.8514 0.5680 0.8409 28 1 3.9786 2.1764 0.0889 29 1 4.0745 0.8455 -3.3288 30 1 3.6750 2.3024 -2.3873 31 1 7.9143 3.4598 -4.0600 32 1 2.9459 -4.8006 -1.0189 33 1 2.4753 -3.8535 0.4129 34 1 1.9994 -3.3055 -1.2123 35 1 3.8347 -3.4132 -2.8630 36 1 5.5412 -3.2866 -2.3259 37 1 4.7417 -1.0153 -3.3131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308907001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:24 Heat of formation + Delta-G solvation = -17.455483 kcal Electronic energy + Delta-G solvation = -18287.474228 eV Core-core repulsion = 15486.070132 eV Total energy + Delta-G solvation = -2801.404096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89645 -38.79547 -37.16207 -34.70344 -33.12077 -31.61525 -31.11527 -28.72883 -27.16404 -26.38862 -24.42688 -23.26330 -21.64235 -20.03347 -19.04354 -18.71246 -17.29678 -16.79366 -16.60775 -16.26597 -15.77212 -15.61316 -15.27707 -14.63537 -14.36869 -14.14767 -13.81775 -13.42375 -13.26829 -13.10892 -12.96771 -12.54296 -12.49433 -12.41365 -12.18683 -11.97084 -11.87916 -11.81183 -11.66248 -10.80877 -10.41704 -10.17574 -9.20616 -8.32773 -8.26757 -6.37349 1.37826 1.38784 1.48832 2.09428 2.32180 2.33062 3.02833 3.03974 3.17394 3.78890 4.25709 4.30148 4.35752 4.38726 4.50053 4.59269 4.61078 4.62552 4.65866 4.74278 4.82399 4.85117 4.89449 4.94606 5.09189 5.14979 5.32961 5.45147 5.51355 5.73729 5.92361 6.33221 6.47214 6.53478 6.68387 7.24845 7.42081 7.74601 8.86383 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.008492 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.824912 B = 3296.276590 C = 4061.023698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.387 6.387 3 C 0.053 3.947 4 C 0.145 3.855 5 N -0.599 5.599 6 C 0.239 3.761 7 C -0.537 4.537 8 H 0.025 0.975 9 C 0.016 3.984 10 N -0.945 5.945 11 Si 0.947 3.053 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.243 1.243 15 C 0.608 3.392 16 N -0.654 5.654 17 C 0.062 3.938 18 H 0.070 0.930 19 C -0.115 4.115 20 C 0.094 3.906 21 N -0.773 5.773 22 H 0.050 0.950 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.041 0.959 31 H 0.268 0.732 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 -7.254 2.008 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C -0.026 4.026 4 C 0.021 3.979 5 N -0.319 5.319 6 C 0.116 3.884 7 C -0.576 4.576 8 H 0.043 0.957 9 C -0.183 4.183 10 N -0.584 5.584 11 Si 0.770 3.230 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.166 1.166 15 C 0.245 3.755 16 N -0.400 5.400 17 C -0.050 4.050 18 H 0.088 0.912 19 C -0.173 4.173 20 C -0.032 4.032 21 N -0.422 5.422 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -13.623 -7.338 2.856 15.735 hybrid contribution 0.566 0.773 -1.738 1.985 sum -13.057 -6.565 1.118 14.657 Atomic orbital electron populations 1.22786 0.81185 1.02722 1.00043 1.88157 1.19725 1.27374 1.95302 1.22994 0.93882 0.85210 1.00485 1.21289 0.92516 0.98285 0.85787 1.45592 1.71947 1.00583 1.13780 1.19307 0.93878 0.90673 0.84532 1.21635 0.94954 1.31600 1.09376 0.95689 1.25839 0.96228 0.95562 1.00636 1.70073 1.14820 1.38143 1.35414 0.85731 0.79180 0.80043 0.78089 1.18764 1.21076 1.16640 1.19596 0.86459 0.85291 0.84163 1.74537 1.41710 0.99855 1.23883 1.22399 0.97910 0.92497 0.92234 0.91187 1.21635 0.95408 0.98734 1.01521 1.22642 1.01547 0.80581 0.98444 1.45960 1.75657 1.06889 1.13658 0.93120 0.94465 0.89770 0.90750 0.93791 0.90934 0.89416 0.95350 0.94068 0.92346 0.90469 0.92916 0.94369 0.89721 0.91208 0.75384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.39 -12.75 9.60 -148.98 -1.43 -14.18 16 3 C 0.05 1.59 6.28 71.98 0.45 2.05 16 4 C 0.15 5.34 5.90 86.38 0.51 5.85 16 5 N -0.60 -25.39 2.51 -714.86 -1.79 -27.18 16 6 C 0.24 10.70 4.20 85.63 0.36 11.06 16 7 C -0.54 -29.44 9.94 25.60 0.25 -29.18 16 8 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 9 C 0.02 0.87 5.47 84.65 0.46 1.33 16 10 N -0.94 -57.05 13.96 21.45 0.30 -56.76 16 11 Si 0.95 40.72 27.47 68.60 1.88 42.61 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 15 C 0.61 25.55 7.77 261.32 2.03 27.58 16 16 N -0.65 -26.58 9.63 -327.34 -3.15 -29.74 16 17 C 0.06 2.02 4.36 45.30 0.20 2.22 16 18 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 19 C -0.11 -3.08 9.42 71.98 0.68 -2.40 16 20 C 0.09 2.86 7.75 86.63 0.67 3.53 16 21 N -0.77 -29.45 6.24 -347.18 -2.17 -31.61 16 22 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 2.84 7.49 -2.39 -0.02 2.82 16 28 H 0.09 3.14 8.07 -2.39 -0.02 3.12 16 29 H 0.03 1.25 5.83 -2.39 -0.01 1.23 16 30 H 0.04 1.74 7.50 -2.38 -0.02 1.72 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 2.17 7.74 -2.39 -0.02 2.15 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.41 15.59 7.53 -92.71 -0.70 14.89 16 Total: -1.00 -67.41 304.21 0.80 -66.61 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.29 Total: 26.26 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.87 Total: 23.99 kcal Atomic # 7 Polarization: -138.47 SS G_CDS: -6.81 Total: -145.28 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -1.43 Total: -14.18 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.61 kcal Total: -67.41 0.80 -66.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308907001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.157 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds