Wall clock time and date at job start Mon Mar 30 2020 03:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00230 * 2 1 4 4 H 1.09004 * 109.46730 * 29.99471 * 3 2 1 5 5 C 1.53001 * 109.47129 * 270.00163 * 3 2 1 6 6 C 1.52996 * 109.47412 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47181 * 59.99605 * 6 5 3 8 8 C 1.53001 * 109.47270 * 300.00482 * 7 6 5 9 9 C 1.52991 * 109.47463 * 149.99778 * 3 2 1 10 10 H 1.09004 * 109.47398 * 60.00103 * 9 3 2 11 11 C 1.50697 * 109.47507 * 300.00248 * 9 3 2 12 12 O 1.21294 * 119.99710 * 359.97438 * 11 9 3 13 13 N 1.34775 * 120.00168 * 180.02562 * 11 9 3 14 14 C 1.46499 * 120.00286 * 359.97438 * 13 11 9 15 15 C 1.37098 * 119.99651 * 179.97438 * 13 11 9 16 16 H 1.08001 * 120.00276 * 22.86734 * 15 13 11 17 17 C 1.38958 * 119.99770 * 202.87000 * 15 13 11 18 18 N 1.31406 * 119.99892 * 11.02066 * 17 15 13 19 19 Si 1.86800 * 119.99826 * 191.02143 * 17 15 13 20 20 H 1.48503 * 109.47092 * 60.00236 * 19 17 15 21 21 H 1.48504 * 109.46651 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47184 * 299.99984 * 19 17 15 23 23 H 1.09003 * 109.47044 * 60.00258 * 1 2 3 24 24 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47153 * 300.00296 * 1 2 3 26 26 H 1.09007 * 109.46657 * 300.00067 * 5 3 2 27 27 H 1.09002 * 109.47065 * 59.99420 * 5 3 2 28 28 H 1.08997 * 109.46915 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.46993 * 299.99947 * 6 5 3 30 30 H 1.09002 * 109.46878 * 60.00271 * 7 6 5 31 31 H 1.08998 * 109.47085 * 179.97438 * 7 6 5 32 32 H 1.09010 * 109.46408 * 299.99872 * 8 7 6 33 33 H 1.08992 * 109.47055 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46942 * 92.86436 * 14 13 11 35 35 H 1.08998 * 109.47279 * 212.86957 * 14 13 11 36 36 H 1.09002 * 109.47142 * 332.87044 * 14 13 11 37 37 H 0.97005 * 119.99929 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8395 3.1693 -1.4426 7 6 4.1881 3.1277 -0.7211 8 6 3.9806 2.6618 0.7214 9 6 3.3589 1.2633 0.7212 10 1 4.0242 0.5693 0.2075 11 6 3.1546 0.8044 2.1420 12 8 2.0399 0.5378 2.5389 13 7 4.2104 0.6912 2.9720 14 6 5.5568 1.0138 2.4929 15 6 4.0244 0.2743 4.2648 16 1 3.1496 -0.3028 4.5255 17 6 4.9616 0.5942 5.2396 18 7 5.9065 1.4699 4.9804 19 14 4.8782 -0.2206 6.9185 20 1 5.0111 -1.6914 6.7620 21 1 5.9829 0.2879 7.7708 22 1 3.5749 0.0936 7.5570 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.8830 1.0773 -1.9563 27 1 1.2569 1.8014 -1.9563 28 1 2.9868 3.5013 -2.4703 29 1 2.1739 3.8630 -0.9289 30 1 4.8537 2.4340 -1.2348 31 1 4.6312 4.1235 -0.7216 32 1 3.3150 3.3556 1.2350 33 1 4.9413 2.6326 1.2354 34 1 5.7817 2.0567 2.7162 35 1 6.2831 0.3709 2.9901 36 1 5.6072 0.8539 1.4159 37 1 6.5609 1.6929 5.6608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335016205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:22 Heat of formation + Delta-G solvation = -84.930698 kcal Electronic energy + Delta-G solvation = -18645.001231 eV Core-core repulsion = 15808.378439 eV Total energy + Delta-G solvation = -2836.622792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59582 -37.41123 -35.89893 -34.50487 -31.77578 -30.38438 -29.61015 -26.28959 -25.93593 -24.64099 -22.59644 -21.86944 -19.86455 -18.70788 -16.79804 -16.18259 -15.94872 -15.17637 -14.66901 -14.52832 -14.12392 -13.87828 -13.62142 -13.21827 -13.06061 -12.66801 -12.18167 -11.92943 -11.54850 -11.35796 -11.21840 -11.12324 -10.88368 -10.87365 -10.55548 -10.48270 -10.34284 -10.26320 -10.06153 -9.86506 -9.00269 -8.89755 -8.13807 -7.55518 -6.21818 -3.77965 3.24301 3.28596 3.33244 3.99350 4.21356 4.27141 4.81158 4.96326 5.14129 5.21199 5.22756 5.49767 5.54362 5.66387 5.69392 5.74286 5.76017 5.82828 5.89107 6.00398 6.12075 6.19701 6.25997 6.29999 6.37409 6.41161 6.48999 6.59184 6.71252 6.95955 7.30235 7.64890 7.75134 8.24781 8.60714 9.30687 9.55008 10.13255 10.82084 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.007583 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.226337 B = 3691.597252 C = 4406.950139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.371 6.371 3 C 0.116 3.884 4 H 0.061 0.939 5 C -0.140 4.140 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.095 4.095 10 H 0.085 0.915 11 C 0.460 3.540 12 O -0.580 6.580 13 N -0.452 5.452 14 C 0.114 3.886 15 C -0.302 4.302 16 H 0.096 0.904 17 C 0.028 3.972 18 N -0.888 5.888 19 Si 0.925 3.075 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.027 0.973 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 2.982 -11.412 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.289 6.289 3 C 0.058 3.942 4 H 0.079 0.921 5 C -0.178 4.178 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.116 4.116 10 H 0.103 0.897 11 C 0.248 3.752 12 O -0.464 6.464 13 N -0.171 5.171 14 C -0.030 4.030 15 C -0.430 4.430 16 H 0.113 0.887 17 C -0.174 4.174 18 N -0.528 5.528 19 Si 0.752 3.248 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.484 2.755 -11.081 11.685 hybrid contribution 0.004 -0.092 0.851 0.856 sum -2.481 2.663 -10.230 10.858 Atomic orbital electron populations 1.22602 0.81992 1.01810 0.99118 1.87886 1.18955 1.27295 1.94734 1.21736 0.94070 0.85107 0.93305 0.92080 1.22075 1.00897 0.97100 0.97761 1.21500 0.97173 0.96581 1.00133 1.21571 0.96885 1.01128 0.96004 1.21790 1.02666 0.94818 0.96575 1.21271 0.96605 0.97980 0.95782 0.89666 1.19879 0.85014 0.83448 0.86905 1.90485 1.23910 1.54560 1.77423 1.43518 1.04946 1.58207 1.10456 1.21594 0.85424 1.01760 0.94236 1.19594 1.08921 1.31035 0.83436 0.88652 1.25300 0.96578 0.96015 0.99488 1.69978 1.16877 1.30904 1.35052 0.86018 0.77807 0.79378 0.81577 1.20040 1.21035 1.19933 0.95439 0.90558 0.93723 0.91342 0.92203 0.92089 0.92047 0.91888 0.91871 0.91791 0.89267 0.92143 0.91767 0.95426 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.82 101.05 1.09 1.76 16 2 O -0.37 -7.25 9.25 -53.48 -0.49 -7.75 16 3 C 0.12 2.08 1.59 -26.74 -0.04 2.04 16 4 H 0.06 1.15 7.74 -51.93 -0.40 0.75 16 5 C -0.14 -1.93 5.54 -26.73 -0.15 -2.08 16 6 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 7 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 8 C -0.12 -2.02 4.82 -26.71 -0.13 -2.15 16 9 C -0.09 -1.84 1.46 -91.75 -0.13 -1.97 16 10 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 11 C 0.46 11.61 6.88 -10.99 -0.08 11.53 16 12 O -0.58 -16.49 14.98 -12.71 -0.19 -16.68 16 13 N -0.45 -11.92 3.02 -122.19 -0.37 -12.29 16 14 C 0.11 2.58 7.04 59.85 0.42 3.01 16 15 C -0.30 -8.68 9.28 -14.93 -0.14 -8.81 16 16 H 0.10 2.88 7.41 -52.49 -0.39 2.49 16 17 C 0.03 0.77 5.13 -17.47 -0.09 0.68 16 18 N -0.89 -24.03 10.61 55.50 0.59 -23.45 16 19 Si 0.93 21.34 29.57 -169.99 -5.03 16.31 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 33 H 0.09 1.56 4.58 -51.93 -0.24 1.32 16 34 H 0.06 1.40 6.49 -51.93 -0.34 1.07 16 35 H 0.06 1.55 7.13 -51.93 -0.37 1.18 16 36 H 0.03 0.53 5.79 -51.93 -0.30 0.23 16 37 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -31.70 288.82 -6.45 -38.15 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.75 Total: 0.58 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 0.44 Total: 0.77 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.22 Total: -35.74 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.68 Total: -24.43 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.70 -6.45 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335016205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.779 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds