Wall clock time and date at job start Mon Mar 30 2020 04:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47035 * 29.99964 * 3 2 1 6 6 H 1.48493 * 109.47159 * 150.00026 * 3 2 1 7 7 C 1.37882 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47265 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47735 * 180.02562 * 10 9 7 12 12 C 1.48002 * 111.00192 * 75.82163 * 11 10 9 13 13 C 1.50441 * 112.82475 * 84.84203 * 12 11 10 14 14 C 1.54305 * 108.49905 * 93.72589 * 13 12 11 15 15 C 1.45875 * 112.19232 * 281.46324 * 14 13 12 16 16 C 1.54311 * 112.18174 * 61.12164 * 15 14 13 17 17 C 1.47994 * 111.00418 * 204.54765 * 11 10 9 18 18 H 1.09001 * 108.81122 * 312.20178 * 17 11 10 19 19 C 1.52996 * 108.81463 * 70.58526 * 17 11 10 20 20 C 1.53004 * 109.47257 * 60.09158 * 19 17 11 21 21 O 1.42898 * 109.47204 * 185.06566 * 20 19 17 22 22 H 0.97002 * 119.99935 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47365 * 60.00235 * 9 7 2 24 24 H 1.08997 * 109.47463 * 300.00041 * 9 7 2 25 25 H 1.08995 * 109.47262 * 59.99666 * 10 9 7 26 26 H 1.09004 * 109.47089 * 300.00080 * 10 9 7 27 27 H 1.08998 * 108.81036 * 323.97620 * 12 11 10 28 28 H 1.08997 * 108.72593 * 205.64365 * 12 11 10 29 29 H 1.09007 * 109.63095 * 334.02631 * 13 12 11 30 30 H 1.08997 * 109.63182 * 213.43170 * 13 12 11 31 31 H 1.09006 * 108.94158 * 160.76394 * 14 13 12 32 32 H 1.09002 * 108.93708 * 42.16713 * 14 13 12 33 33 H 1.08992 * 108.94134 * 181.81541 * 15 14 13 34 34 H 1.08996 * 108.93860 * 300.42306 * 15 14 13 35 35 H 1.08999 * 109.63400 * 41.16680 * 16 15 14 36 36 H 1.09000 * 109.63319 * 161.76668 * 16 15 14 37 37 H 1.08995 * 109.47541 * 180.09228 * 19 17 11 38 38 H 1.09003 * 109.46982 * 300.09386 * 19 17 11 39 39 H 1.09002 * 109.46785 * 305.06477 * 20 19 17 40 40 H 1.08994 * 109.46965 * 65.06415 * 20 19 17 41 41 H 0.96701 * 113.99613 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5107 -4.9343 -0.0032 12 6 0.9539 -5.2234 -1.3437 13 6 1.9431 -5.9003 -2.2528 14 6 1.7413 -7.4264 -2.1463 15 6 2.3492 -7.9797 -0.9411 16 6 1.7379 -7.3855 0.3452 17 6 2.3333 -6.0224 0.5709 18 1 3.3235 -5.9918 0.1163 19 6 2.4752 -5.7917 2.0767 20 6 1.0898 -5.7942 2.7259 21 8 1.2119 -5.4622 4.1104 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6240 -2.5575 0.8879 25 1 2.8711 -3.6048 0.8890 26 1 2.8725 -3.6040 -0.8910 27 1 0.6384 -4.2866 -1.8027 28 1 0.0831 -5.8688 -1.2290 29 1 2.9572 -5.6428 -1.9472 30 1 1.7747 -5.5795 -3.2808 31 1 2.1874 -7.9041 -3.0187 32 1 0.6729 -7.6421 -2.1347 33 1 2.2038 -9.0599 -0.9355 34 1 3.4183 -7.7684 -0.9551 35 1 0.6574 -7.2989 0.2310 36 1 1.9691 -8.0310 1.1925 37 1 3.0812 -6.5870 2.5106 38 1 2.9574 -4.8302 2.2531 39 1 0.4552 -5.0593 2.2306 40 1 0.6443 -6.7841 2.6276 41 1 0.3703 -5.4446 4.5863 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342016729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:01 Heat of formation + Delta-G solvation = -68.446891 kcal Electronic energy + Delta-G solvation = -18537.010550 eV Core-core repulsion = 15836.935645 eV Total energy + Delta-G solvation = -2700.074906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52099 -36.53714 -34.83182 -33.48006 -32.61838 -29.80630 -28.68284 -26.28333 -24.64008 -23.75802 -21.88334 -21.01102 -19.90424 -18.30283 -17.11783 -16.48739 -16.03002 -15.32041 -14.61166 -14.43543 -14.30494 -14.02782 -13.50278 -13.12047 -12.70599 -12.56724 -12.29404 -12.10169 -11.98254 -11.49534 -11.12556 -11.05627 -10.92850 -10.78450 -10.64912 -10.50318 -10.36602 -10.25394 -10.04475 -9.69720 -9.48172 -9.33459 -9.05473 -8.28721 -7.50751 -5.95604 -3.97435 3.34323 3.40574 3.44214 4.29232 4.52721 4.54708 4.77289 4.85753 5.06250 5.22002 5.34649 5.40434 5.50830 5.56519 5.66217 5.72229 5.75525 5.83503 5.93636 6.06446 6.08422 6.16290 6.18392 6.23138 6.30373 6.36121 6.43415 6.48741 6.50259 6.59218 6.70132 7.09319 7.58600 7.68771 7.86065 7.94590 8.00434 8.15353 8.49245 9.10216 9.65940 11.15720 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.006689 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.692393 B = 4184.984259 C = 5044.472891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.034 3.966 10 C 0.063 3.937 11 N -0.543 5.543 12 C 0.060 3.940 13 C -0.147 4.147 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.117 4.117 17 C 0.094 3.906 18 H 0.039 0.961 19 C -0.111 4.111 20 C 0.081 3.919 21 O -0.582 6.582 22 H 0.259 0.741 23 H 0.015 0.985 24 H 0.022 0.978 25 H 0.059 0.941 26 H 0.020 0.980 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 -15.757 -0.333 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.063 4.063 11 N -0.268 5.268 12 C -0.068 4.068 13 C -0.187 4.187 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.014 4.014 18 H 0.057 0.943 19 C -0.149 4.149 20 C 0.004 3.996 21 O -0.388 6.388 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.132 -15.572 -0.203 15.719 hybrid contribution 0.574 0.849 -0.494 1.138 sum 2.706 -14.723 -0.697 14.986 Atomic orbital electron populations 1.69973 1.05987 1.26450 1.50872 1.24977 0.94804 0.99077 0.95397 0.86628 0.79907 0.83661 0.78003 1.20768 1.21224 1.19919 1.21217 0.92941 0.91197 1.50584 0.92948 1.19032 0.93888 0.89892 0.97569 1.22353 0.96690 0.88440 0.98844 1.61918 1.39349 1.02661 1.22916 1.21862 0.96478 1.00768 0.87675 1.21927 1.01024 0.95088 1.00613 1.20549 1.01082 0.96077 0.97630 1.20581 1.00231 0.99631 0.95181 1.21535 1.01458 0.95366 0.97072 1.21200 0.95289 0.91088 0.93800 0.94291 1.21648 0.96726 1.02604 0.93883 1.22156 0.98033 0.98725 0.80669 1.86432 1.35588 1.93684 1.23047 0.93087 0.96690 0.95952 0.92272 0.96163 0.90408 0.91852 0.91933 0.91726 0.92864 0.92144 0.92540 0.92493 0.90709 0.91429 0.92054 0.90855 0.91226 0.94819 0.78002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.88 5.08 -27.89 -0.14 0.74 16 10 C 0.06 1.34 4.67 -3.83 -0.02 1.32 16 11 N -0.54 -9.49 3.41 -227.94 -0.78 -10.27 16 12 C 0.06 0.96 4.99 -4.49 -0.02 0.94 16 13 C -0.15 -2.01 5.50 -27.33 -0.15 -2.16 16 14 C -0.12 -1.31 5.30 -29.42 -0.16 -1.46 16 15 C -0.12 -1.29 5.30 -29.42 -0.16 -1.45 16 16 C -0.12 -1.41 4.12 -27.32 -0.11 -1.52 16 17 C 0.09 1.39 1.46 -68.39 -0.10 1.29 16 18 H 0.04 0.59 6.48 -51.93 -0.34 0.26 16 19 C -0.11 -1.69 5.00 -26.73 -0.13 -1.82 16 20 C 0.08 1.23 6.66 37.16 0.25 1.48 16 21 O -0.58 -8.94 13.66 -35.23 -0.48 -9.42 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.01 0.41 6.77 -51.93 -0.35 0.06 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.27 6.10 -51.93 -0.32 0.95 16 26 H 0.02 0.43 7.56 -51.93 -0.39 0.04 16 27 H 0.08 1.43 6.44 -51.93 -0.33 1.10 16 28 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 29 H 0.06 0.92 6.68 -51.93 -0.35 0.58 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 35 H 0.07 0.94 7.07 -51.93 -0.37 0.58 16 36 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 37 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 38 H 0.07 1.29 6.44 -51.93 -0.33 0.95 16 39 H 0.07 1.21 7.42 -51.93 -0.39 0.82 16 40 H 0.03 0.44 7.37 -51.93 -0.38 0.06 16 41 H 0.37 4.03 9.12 45.56 0.42 4.44 16 LS Contribution 307.04 15.07 4.63 4.63 Total: -1.00 -30.95 307.04 -8.36 -39.31 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.29 Total: 1.47 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.15 Total: -16.27 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.04 Total: -36.63 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.48 Total: -9.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.95 -8.36 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342016729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.134 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds