Wall clock time and date at job start Mon Mar 30 2020 04:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47035 * 29.99964 * 3 2 1 6 6 H 1.48493 * 109.47159 * 150.00026 * 3 2 1 7 7 C 1.37882 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47265 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47735 * 180.02562 * 10 9 7 12 12 C 1.48002 * 111.00192 * 75.82163 * 11 10 9 13 13 C 1.50441 * 112.82475 * 84.84203 * 12 11 10 14 14 C 1.54305 * 108.49905 * 93.72589 * 13 12 11 15 15 C 1.45875 * 112.19232 * 281.46324 * 14 13 12 16 16 C 1.54311 * 112.18174 * 61.12164 * 15 14 13 17 17 C 1.47994 * 111.00418 * 204.54765 * 11 10 9 18 18 H 1.09001 * 108.81122 * 312.20178 * 17 11 10 19 19 C 1.52996 * 108.81463 * 70.58526 * 17 11 10 20 20 C 1.53004 * 109.47257 * 60.09158 * 19 17 11 21 21 O 1.42898 * 109.47204 * 185.06566 * 20 19 17 22 22 H 0.97002 * 119.99935 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47365 * 60.00235 * 9 7 2 24 24 H 1.08997 * 109.47463 * 300.00041 * 9 7 2 25 25 H 1.08995 * 109.47262 * 59.99666 * 10 9 7 26 26 H 1.09004 * 109.47089 * 300.00080 * 10 9 7 27 27 H 1.08998 * 108.81036 * 323.97620 * 12 11 10 28 28 H 1.08997 * 108.72593 * 205.64365 * 12 11 10 29 29 H 1.09007 * 109.63095 * 334.02631 * 13 12 11 30 30 H 1.08997 * 109.63182 * 213.43170 * 13 12 11 31 31 H 1.09006 * 108.94158 * 160.76394 * 14 13 12 32 32 H 1.09002 * 108.93708 * 42.16713 * 14 13 12 33 33 H 1.08992 * 108.94134 * 181.81541 * 15 14 13 34 34 H 1.08996 * 108.93860 * 300.42306 * 15 14 13 35 35 H 1.08999 * 109.63400 * 41.16680 * 16 15 14 36 36 H 1.09000 * 109.63319 * 161.76668 * 16 15 14 37 37 H 1.08995 * 109.47541 * 180.09228 * 19 17 11 38 38 H 1.09003 * 109.46982 * 300.09386 * 19 17 11 39 39 H 1.09002 * 109.46785 * 305.06477 * 20 19 17 40 40 H 1.08994 * 109.46965 * 65.06415 * 20 19 17 41 41 H 0.96701 * 113.99613 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5107 -4.9343 -0.0032 12 6 0.9539 -5.2234 -1.3437 13 6 1.9431 -5.9003 -2.2528 14 6 1.7413 -7.4264 -2.1463 15 6 2.3492 -7.9797 -0.9411 16 6 1.7379 -7.3855 0.3452 17 6 2.3333 -6.0224 0.5709 18 1 3.3235 -5.9918 0.1163 19 6 2.4752 -5.7917 2.0767 20 6 1.0898 -5.7942 2.7259 21 8 1.2119 -5.4622 4.1104 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6240 -2.5575 0.8879 25 1 2.8711 -3.6048 0.8890 26 1 2.8725 -3.6040 -0.8910 27 1 0.6384 -4.2866 -1.8027 28 1 0.0831 -5.8688 -1.2290 29 1 2.9572 -5.6428 -1.9472 30 1 1.7747 -5.5795 -3.2808 31 1 2.1874 -7.9041 -3.0187 32 1 0.6729 -7.6421 -2.1347 33 1 2.2038 -9.0599 -0.9355 34 1 3.4183 -7.7684 -0.9551 35 1 0.6574 -7.2989 0.2310 36 1 1.9691 -8.0310 1.1925 37 1 3.0812 -6.5870 2.5106 38 1 2.9574 -4.8302 2.2531 39 1 0.4552 -5.0593 2.2306 40 1 0.6443 -6.7841 2.6276 41 1 0.3703 -5.4446 4.5863 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342016729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:01 Heat of formation + Delta-G solvation = -89.794172 kcal Electronic energy + Delta-G solvation = -18537.936238 eV Core-core repulsion = 15836.935645 eV Total energy + Delta-G solvation = -2701.000593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73443 -37.72267 -36.31693 -34.94882 -34.33861 -31.53944 -29.98614 -27.77565 -25.92189 -25.50438 -23.08362 -22.60374 -21.10955 -19.63389 -18.57578 -18.24820 -17.46154 -16.53567 -16.52079 -15.70482 -15.58083 -15.36954 -14.84076 -14.31997 -14.18939 -14.05644 -13.72475 -13.60717 -13.27756 -13.06254 -12.84851 -12.60560 -12.46169 -12.22011 -12.03672 -11.92539 -11.57736 -11.40168 -11.36163 -11.32506 -11.14631 -10.99407 -10.71053 -10.52307 -8.93717 -8.19857 -6.30863 1.38307 1.40092 1.51155 2.39480 2.98726 3.13197 3.41931 3.79275 3.87171 4.00914 4.10832 4.22635 4.35213 4.45018 4.49365 4.54476 4.55729 4.67207 4.73891 4.78142 4.87170 5.00385 5.02071 5.06570 5.14595 5.20934 5.22815 5.30085 5.31426 5.38834 5.42750 5.49746 5.51590 5.71915 5.82057 6.16645 6.39078 6.48737 6.86608 6.95411 7.37900 8.92129 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.006689 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.692393 B = 4184.984259 C = 5044.472891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.046 3.954 10 C 0.084 3.916 11 N -0.552 5.552 12 C 0.062 3.938 13 C -0.143 4.143 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.112 4.112 17 C 0.098 3.902 18 H 0.037 0.963 19 C -0.111 4.111 20 C 0.087 3.913 21 O -0.600 6.600 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.011 1.011 25 H 0.054 0.946 26 H 0.017 0.983 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -17.363 -0.482 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.008 3.992 10 C -0.043 4.043 11 N -0.277 5.277 12 C -0.065 4.065 13 C -0.183 4.183 14 C -0.148 4.148 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.009 4.009 18 H 0.055 0.945 19 C -0.149 4.149 20 C 0.009 3.991 21 O -0.408 6.408 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.007 0.993 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.054 -17.199 -0.350 17.472 hybrid contribution 0.227 1.333 -0.415 1.414 sum 3.281 -15.866 -0.765 16.220 Atomic orbital electron populations 1.70107 1.07737 1.27688 1.51495 1.25931 0.95745 1.03176 0.94659 0.85474 0.78651 0.78550 0.78536 1.19628 1.20571 1.18957 1.21639 0.93349 0.92574 1.50824 0.92646 1.18826 0.94021 0.91683 0.94670 1.21888 0.95169 0.88958 0.98319 1.61792 1.39476 1.02299 1.24136 1.21851 0.97731 0.99640 0.87275 1.21868 0.99257 0.97150 0.99978 1.20517 1.01809 0.93705 0.98754 1.20573 0.99875 1.00961 0.93992 1.21524 1.01067 0.93573 0.98765 1.21284 0.94983 0.91592 0.93048 0.94472 1.21682 0.96985 1.01700 0.94540 1.22066 0.97444 0.99197 0.80371 1.86385 1.37428 1.93821 1.23158 0.92782 0.99059 0.99301 0.92785 0.96519 0.93806 0.90369 0.93177 0.91312 0.91132 0.91466 0.90046 0.92641 0.91023 0.89438 0.89807 0.93984 0.94349 0.91944 0.75866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.05 2.51 5.08 29.84 0.15 2.66 16 10 C 0.08 3.71 4.67 86.30 0.40 4.12 16 11 N -0.55 -19.68 3.41 -875.06 -2.99 -22.67 16 12 C 0.06 2.02 4.99 85.26 0.43 2.45 16 13 C -0.14 -3.77 5.50 30.21 0.17 -3.60 16 14 C -0.11 -2.16 5.30 28.85 0.15 -2.01 16 15 C -0.12 -2.13 5.30 28.85 0.15 -1.98 16 16 C -0.11 -2.37 4.12 30.21 0.12 -2.25 16 17 C 0.10 2.80 1.46 43.88 0.06 2.86 16 18 H 0.04 1.09 6.48 -2.39 -0.02 1.07 16 19 C -0.11 -3.31 5.00 30.59 0.15 -3.16 16 20 C 0.09 2.56 6.66 71.98 0.48 3.03 16 21 O -0.60 -18.00 13.66 -148.98 -2.04 -20.03 16 22 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 23 H -0.01 -0.53 6.77 -2.39 -0.02 -0.54 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.05 2.42 6.10 -2.39 -0.01 2.40 16 26 H 0.02 0.73 7.56 -2.38 -0.02 0.72 16 27 H 0.04 1.70 6.44 -2.39 -0.02 1.68 16 28 H 0.08 2.28 6.58 -2.39 -0.02 2.27 16 29 H 0.05 1.44 6.68 -2.38 -0.02 1.43 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.25 7.52 -2.39 -0.02 1.24 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.06 7.52 -2.39 -0.02 1.04 16 35 H 0.07 1.60 7.07 -2.39 -0.02 1.59 16 36 H 0.09 1.56 7.50 -2.39 -0.02 1.54 16 37 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 38 H 0.04 1.50 6.44 -2.39 -0.02 1.49 16 39 H 0.04 1.37 7.42 -2.39 -0.02 1.35 16 40 H 0.06 1.48 7.37 -2.39 -0.02 1.47 16 41 H 0.39 8.12 9.12 -74.06 -0.68 7.45 16 Total: -1.00 -68.47 307.04 0.58 -67.88 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.32 Total: 14.27 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 2.97 Total: -29.22 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -2.70 Total: -80.33 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -2.04 Total: -20.03 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.47 0.58 -67.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342016729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.910 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds