Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 C 1.52989 * 109.47313 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47728 * 60.00119 * 6 5 3 8 8 C 1.53008 * 109.46626 * 300.00301 * 7 6 5 9 9 C 1.52992 * 109.47622 * 59.99637 * 8 7 6 10 10 H 1.08998 * 109.47118 * 59.99698 * 9 8 7 11 11 C 1.50700 * 109.47561 * 180.02562 * 9 8 7 12 12 O 1.21273 * 119.99838 * 119.99639 * 11 9 8 13 13 N 1.34773 * 119.99563 * 300.00093 * 11 9 8 14 14 C 1.46506 * 119.99871 * 179.97438 * 13 11 9 15 15 C 1.50699 * 109.47163 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99630 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00282 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46986 * 60.00001 * 19 17 15 21 21 H 1.48495 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46989 * 300.00335 * 19 17 15 23 23 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 24 24 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46614 * 300.00276 * 5 3 2 27 27 H 1.09000 * 109.46387 * 59.99775 * 5 3 2 28 28 H 1.09002 * 109.47238 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.47260 * 299.99579 * 6 5 3 30 30 H 1.08999 * 109.47191 * 59.99417 * 7 6 5 31 31 H 1.08994 * 109.47538 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.46747 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.46614 * 299.99470 * 8 7 6 34 34 H 0.96995 * 120.00373 * 0.02562 * 13 11 9 35 35 H 1.09000 * 109.47073 * 300.00739 * 14 13 11 36 36 H 1.09003 * 109.46663 * 59.99939 * 14 13 11 37 37 H 0.97006 * 119.99847 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 2.8404 3.1689 -1.4425 7 6 4.1891 3.1263 -0.7215 8 6 3.9817 2.6603 0.7210 9 6 3.3590 1.2628 0.7211 10 1 4.0239 0.5688 0.2071 11 6 3.1541 0.8041 2.1419 12 8 2.0394 0.5376 2.5382 13 7 4.2097 0.6902 2.9720 14 6 4.0105 0.2448 4.3534 15 6 5.3388 0.2022 5.0639 16 1 6.2411 0.4796 4.5391 17 6 5.4022 -0.1909 6.3839 18 7 4.3035 -0.5292 7.0228 19 14 7.0486 -0.2431 7.2650 20 1 7.6531 1.1134 7.2652 21 1 6.8468 -0.6959 8.6647 22 1 7.9547 -1.1887 6.5651 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.8829 1.0776 -1.9563 27 1 1.2567 1.8015 -1.9563 28 1 2.9877 3.5011 -2.4702 29 1 2.1754 3.8630 -0.9286 30 1 4.8541 2.4322 -1.2354 31 1 4.6326 4.1220 -0.7211 32 1 4.9427 2.6295 1.2346 33 1 3.3168 3.3544 1.2349 34 1 5.1012 0.9038 2.6551 35 1 3.3455 0.9392 4.8668 36 1 3.5666 -0.7507 4.3537 37 1 4.3482 -0.8061 7.9514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351589813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = -111.918375 kcal Electronic energy + Delta-G solvation = -17889.671796 eV Core-core repulsion = 15051.878731 eV Total energy + Delta-G solvation = -2837.793065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87460 -37.67005 -36.19501 -34.07028 -32.33050 -31.01563 -29.91183 -27.17509 -26.18014 -23.71619 -22.45384 -21.83349 -20.11675 -19.36262 -17.23974 -16.45265 -15.76323 -15.45095 -14.95251 -14.76432 -14.49631 -14.12993 -13.76985 -13.57054 -13.45083 -12.92343 -12.39199 -12.19590 -11.87134 -11.69907 -11.55660 -11.17995 -11.02153 -10.96295 -10.83311 -10.82535 -10.52889 -10.30968 -10.25344 -9.37130 -9.28511 -8.77383 -8.68259 -7.77869 -6.12818 -4.19524 3.27397 3.32043 3.33645 3.49336 3.96399 4.13016 4.39553 4.65251 4.81940 4.90196 5.16818 5.22953 5.25005 5.32748 5.38897 5.41409 5.49920 5.57881 5.68710 5.77634 5.90624 5.94317 5.97411 6.02938 6.06576 6.10080 6.24351 6.35455 7.37194 7.48381 7.53779 7.58554 7.72521 8.02260 8.71944 8.84412 9.21969 9.47520 10.97409 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.005471 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.752646 B = 5116.942941 C = 5781.033049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.372 6.372 3 C 0.113 3.887 4 H 0.064 0.936 5 C -0.141 4.141 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.109 4.109 9 C -0.107 4.107 10 H 0.097 0.903 11 C 0.506 3.494 12 O -0.547 6.547 13 N -0.715 5.715 14 C 0.251 3.749 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.030 0.970 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.388 0.612 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 6.797 -16.692 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.290 6.290 3 C 0.054 3.946 4 H 0.082 0.918 5 C -0.179 4.179 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.147 4.147 9 C -0.129 4.129 10 H 0.115 0.885 11 C 0.290 3.710 12 O -0.425 6.425 13 N -0.363 5.363 14 C 0.130 3.870 15 C -0.581 4.581 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.221 0.779 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.665 6.353 -16.174 17.580 hybrid contribution 1.085 0.180 0.442 1.185 sum -1.580 6.533 -15.731 17.107 Atomic orbital electron populations 1.22652 0.81471 1.02214 0.99334 1.87893 1.19404 1.26958 1.94783 1.21758 0.93570 0.85482 0.93763 0.91777 1.22070 1.01276 0.97111 0.97415 1.21509 0.96935 0.96623 1.00467 1.21569 0.97223 1.01455 0.95425 1.21519 1.01402 0.94569 0.97238 1.21481 0.97860 0.98637 0.94877 0.88466 1.20246 0.85405 0.78595 0.86741 1.90627 1.24163 1.50596 1.77161 1.46441 1.08691 1.66748 1.14446 1.19058 0.97083 0.95415 0.75431 1.21204 0.92925 1.47171 0.96759 0.92015 1.24949 0.97002 0.94830 0.97227 1.69971 1.27241 1.43927 1.11244 0.86485 0.83354 0.78507 0.78610 1.20092 1.21090 1.20084 0.95130 0.93597 0.90225 0.91126 0.91842 0.91765 0.91880 0.91590 0.91537 0.90554 0.91269 0.77913 0.95734 0.95668 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.82 101.05 1.09 1.65 16 2 O -0.37 -6.30 9.24 -53.51 -0.49 -6.80 16 3 C 0.11 1.66 1.59 -26.72 -0.04 1.61 16 4 H 0.06 0.99 7.74 -51.93 -0.40 0.59 16 5 C -0.14 -1.56 5.54 -26.73 -0.15 -1.70 16 6 C -0.12 -1.10 5.92 -26.74 -0.16 -1.25 16 7 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 8 C -0.11 -1.34 5.10 -26.73 -0.14 -1.48 16 9 C -0.11 -1.63 2.27 -91.77 -0.21 -1.84 16 10 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 11 C 0.51 10.54 7.01 -10.99 -0.08 10.46 16 12 O -0.55 -13.56 15.28 -12.71 -0.19 -13.75 16 13 N -0.71 -15.56 5.44 -61.47 -0.33 -15.90 16 14 C 0.25 6.83 5.43 -5.19 -0.03 6.80 16 15 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H 0.03 0.34 7.87 -51.93 -0.41 -0.07 16 24 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.39 7.28 7.74 -40.82 -0.32 6.96 16 35 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -32.71 302.64 -7.14 -39.84 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.11 Total: 2.41 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.28 Total: -0.65 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.40 Total: -41.67 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.69 Total: -20.55 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.71 -7.14 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351589813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.074 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds