Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 C 1.52989 * 109.47313 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47728 * 60.00119 * 6 5 3 8 8 C 1.53008 * 109.46626 * 300.00301 * 7 6 5 9 9 C 1.52992 * 109.47622 * 59.99637 * 8 7 6 10 10 H 1.08998 * 109.47118 * 59.99698 * 9 8 7 11 11 C 1.50700 * 109.47561 * 180.02562 * 9 8 7 12 12 O 1.21273 * 119.99838 * 119.99639 * 11 9 8 13 13 N 1.34773 * 119.99563 * 300.00093 * 11 9 8 14 14 C 1.46506 * 119.99871 * 179.97438 * 13 11 9 15 15 C 1.50699 * 109.47163 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99630 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00282 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46986 * 60.00001 * 19 17 15 21 21 H 1.48495 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46989 * 300.00335 * 19 17 15 23 23 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 24 24 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46614 * 300.00276 * 5 3 2 27 27 H 1.09000 * 109.46387 * 59.99775 * 5 3 2 28 28 H 1.09002 * 109.47238 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.47260 * 299.99579 * 6 5 3 30 30 H 1.08999 * 109.47191 * 59.99417 * 7 6 5 31 31 H 1.08994 * 109.47538 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.46747 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.46614 * 299.99470 * 8 7 6 34 34 H 0.96995 * 120.00373 * 0.02562 * 13 11 9 35 35 H 1.09000 * 109.47073 * 300.00739 * 14 13 11 36 36 H 1.09003 * 109.46663 * 59.99939 * 14 13 11 37 37 H 0.97006 * 119.99847 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 2.8404 3.1689 -1.4425 7 6 4.1891 3.1263 -0.7215 8 6 3.9817 2.6603 0.7210 9 6 3.3590 1.2628 0.7211 10 1 4.0239 0.5688 0.2071 11 6 3.1541 0.8041 2.1419 12 8 2.0394 0.5376 2.5382 13 7 4.2097 0.6902 2.9720 14 6 4.0105 0.2448 4.3534 15 6 5.3388 0.2022 5.0639 16 1 6.2411 0.4796 4.5391 17 6 5.4022 -0.1909 6.3839 18 7 4.3035 -0.5292 7.0228 19 14 7.0486 -0.2431 7.2650 20 1 7.6531 1.1134 7.2652 21 1 6.8468 -0.6959 8.6647 22 1 7.9547 -1.1887 6.5651 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.8829 1.0776 -1.9563 27 1 1.2567 1.8015 -1.9563 28 1 2.9877 3.5011 -2.4702 29 1 2.1754 3.8630 -0.9286 30 1 4.8541 2.4322 -1.2354 31 1 4.6326 4.1220 -0.7211 32 1 4.9427 2.6295 1.2346 33 1 3.3168 3.3544 1.2349 34 1 5.1012 0.9038 2.6551 35 1 3.3455 0.9392 4.8668 36 1 3.5666 -0.7507 4.3537 37 1 4.3482 -0.8061 7.9514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351589813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -134.434076 kcal Electronic energy + Delta-G solvation = -17890.648150 eV Core-core repulsion = 15051.878731 eV Total energy + Delta-G solvation = -2838.769419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25933 -39.16084 -37.27205 -36.09696 -34.35173 -32.21356 -30.89317 -29.18642 -27.33909 -25.32081 -23.89133 -23.05437 -21.38346 -20.79384 -19.00345 -17.75091 -17.48924 -17.08000 -16.49127 -16.08661 -15.97941 -15.66224 -15.00714 -14.78076 -14.54011 -14.20467 -14.07865 -13.79648 -13.52912 -13.12301 -12.89516 -12.67866 -12.61310 -12.28865 -12.19433 -11.98758 -11.75846 -11.52499 -11.45336 -11.26460 -10.79116 -10.63886 -10.27493 -9.79660 -8.29209 -6.46410 1.42574 1.47206 1.55403 1.82033 2.32500 2.59689 2.83994 3.05347 3.62991 3.73731 3.99603 4.21356 4.24074 4.26063 4.34215 4.41969 4.46935 4.52615 4.58802 4.82683 4.88075 4.93527 5.05799 5.12419 5.16448 5.21416 5.23529 5.29830 5.34035 5.49531 5.51580 5.71154 5.84930 6.34010 6.64562 6.93954 7.23249 7.53147 8.82975 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.005471 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.752646 B = 5116.942941 C = 5781.033049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.403 6.403 3 C 0.107 3.893 4 H 0.047 0.953 5 C -0.131 4.131 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.107 4.107 9 C -0.096 4.096 10 H 0.113 0.887 11 C 0.498 3.502 12 O -0.593 6.593 13 N -0.709 5.709 14 C 0.268 3.732 15 C -0.557 4.557 16 H 0.084 0.916 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.285 1.285 22 H -0.262 1.262 23 H 0.062 0.938 24 H 0.024 0.976 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.406 0.594 35 H -0.015 1.015 36 H -0.018 1.018 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 7.965 -18.720 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.322 6.322 3 C 0.049 3.951 4 H 0.065 0.935 5 C -0.169 4.169 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.145 4.145 9 C -0.117 4.117 10 H 0.131 0.869 11 C 0.286 3.714 12 O -0.474 6.474 13 N -0.359 5.359 14 C 0.146 3.854 15 C -0.594 4.594 16 H 0.102 0.898 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.809 3.191 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.187 1.187 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.003 0.997 36 H 0.000 1.000 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.360 7.546 -18.253 19.755 hybrid contribution 0.270 -0.204 1.073 1.125 sum -0.090 7.342 -17.180 18.683 Atomic orbital electron populations 1.22749 0.80348 1.02959 0.99781 1.87833 1.20847 1.28473 1.95083 1.21950 0.92530 0.84453 0.96166 0.93477 1.22008 1.02327 0.98240 0.94289 1.21541 0.96540 0.95276 1.01978 1.21565 0.97761 1.02751 0.92920 1.21567 1.00978 0.92131 0.99812 1.21541 0.99210 1.00720 0.90255 0.86912 1.21382 0.84224 0.77042 0.88789 1.90602 1.25994 1.52232 1.78541 1.46201 1.10172 1.66862 1.12646 1.18493 0.96562 0.92147 0.78246 1.21590 0.93321 1.47190 0.97339 0.89803 1.26099 1.01482 0.93874 0.98179 1.70145 1.30304 1.44882 1.11762 0.85183 0.77701 0.79343 0.76837 1.18472 1.21056 1.18676 0.91978 0.95751 0.89458 0.90498 0.90743 0.89185 0.92055 0.90325 0.89535 0.89980 0.92368 0.75827 0.99675 1.00024 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 10.82 113.37 1.23 2.29 16 2 O -0.40 -13.72 9.24 -131.50 -1.22 -14.94 16 3 C 0.11 3.09 1.59 30.60 0.05 3.13 16 4 H 0.05 1.49 7.74 -2.39 -0.02 1.47 16 5 C -0.13 -2.54 5.54 30.59 0.17 -2.37 16 6 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 7 C -0.11 -1.73 5.92 30.60 0.18 -1.54 16 8 C -0.11 -2.43 5.10 30.59 0.16 -2.27 16 9 C -0.10 -2.86 2.27 -11.54 -0.03 -2.89 16 10 H 0.11 3.04 8.14 -2.39 -0.02 3.03 16 11 C 0.50 21.41 7.01 87.66 0.61 22.03 16 12 O -0.59 -31.08 15.28 14.47 0.22 -30.86 16 13 N -0.71 -31.64 5.44 -466.78 -2.54 -34.18 16 14 C 0.27 15.35 5.43 85.63 0.46 15.81 16 15 C -0.56 -31.04 9.28 25.60 0.24 -30.80 16 16 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 17 C 0.00 0.18 5.46 84.65 0.46 0.64 16 18 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 19 Si 0.99 42.84 29.54 68.60 2.03 44.87 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 H 0.06 1.31 7.87 -2.39 -0.02 1.30 16 24 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 25 H 0.09 2.23 8.14 -2.38 -0.02 2.22 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.29 7.87 -2.39 -0.02 1.28 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.76 7.56 -2.38 -0.02 1.75 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.41 15.02 7.74 -92.71 -0.72 14.30 16 35 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 37 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -74.59 302.64 2.82 -71.77 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.32 Total: 18.01 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 3.72 Total: 2.47 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -2.25 Total: -91.32 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.99 Total: -45.80 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -74.59 2.82 -71.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351589813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.661 kcal (2) G-P(sol) polarization free energy of solvation -74.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds