Wall clock time and date at job start Mon Mar 30 2020 03:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.45842 * 2 1 4 4 C 1.54383 * 110.41090 * 237.59350 * 2 1 3 5 5 H 1.08998 * 110.32007 * 336.25380 * 4 2 1 6 6 N 1.46889 * 110.32751 * 98.46785 * 4 2 1 7 7 C 1.54268 * 105.05808 * 217.36830 * 4 2 1 8 8 C 1.54382 * 105.05847 * 359.97438 * 7 4 2 9 9 N 1.48554 * 104.59700 * 23.85509 * 8 7 4 10 10 C 1.46901 * 111.00208 * 200.96017 * 9 8 7 11 11 C 1.50705 * 109.46746 * 285.42181 * 10 9 8 12 12 O 1.21274 * 120.00399 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99721 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47109 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00496 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99572 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 H 1.09005 * 109.46752 * 299.03674 * 1 2 3 24 24 H 1.09001 * 109.47403 * 59.03636 * 1 2 3 25 25 H 1.08998 * 109.46544 * 179.04221 * 1 2 3 26 26 H 1.00900 * 111.00013 * 179.97438 * 6 4 2 27 27 H 1.00895 * 111.00193 * 303.95480 * 6 4 2 28 28 H 1.08999 * 110.32746 * 118.89201 * 7 4 2 29 29 H 1.09005 * 110.31744 * 241.00054 * 7 4 2 30 30 H 1.09002 * 110.40805 * 265.07685 * 8 7 4 31 31 H 1.08997 * 110.41062 * 142.63723 * 8 7 4 32 32 H 1.08992 * 109.47407 * 165.41871 * 10 9 8 33 33 H 1.09001 * 109.46874 * 45.41889 * 10 9 8 34 34 H 0.97003 * 119.99860 * 359.97438 * 13 11 10 35 35 H 1.09002 * 109.47129 * 59.99342 * 14 13 11 36 36 H 1.08998 * 109.46845 * 300.00149 * 14 13 11 37 37 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7754 -1.2216 5 1 1.3235 -1.4879 -1.5760 6 7 2.4365 0.1564 -2.2957 7 6 3.3178 -1.5188 -0.7055 8 6 3.4294 -1.1294 0.7842 9 7 2.0487 -0.7456 1.1753 10 6 2.0577 0.1024 2.3748 11 6 2.3514 -0.7444 3.5864 12 8 2.5346 -1.9369 3.4629 13 7 2.4094 -0.1767 4.8074 14 6 2.6943 -0.9999 5.9852 15 6 2.7037 -0.1299 7.2157 16 1 2.5166 0.9302 7.1291 17 6 2.9511 -0.6875 8.4522 18 7 3.1795 -1.9783 8.5577 19 14 2.9621 0.3906 9.9776 20 1 1.6353 1.0387 10.1353 21 1 4.0093 1.4343 9.8386 22 1 3.2498 -0.4440 11.1717 23 1 -0.3633 0.4988 0.8986 24 1 -0.3634 0.5287 -0.8812 25 1 -0.3632 -1.0275 -0.0172 26 1 2.7904 -0.3401 -3.0997 27 1 1.6560 0.7439 -2.5480 28 1 3.1862 -2.5961 -0.8067 29 1 4.2039 -1.1934 -1.2506 30 1 4.1078 -0.2850 0.9065 31 1 3.7694 -1.9800 1.3750 32 1 1.0838 0.5777 2.4911 33 1 2.8261 0.8687 2.2722 34 1 2.2625 0.7771 4.9062 35 1 3.6683 -1.4753 5.8693 36 1 1.9259 -1.7662 6.0874 37 1 3.1734 -2.5383 7.7656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379826039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:35 Heat of formation + Delta-G solvation = -40.094027 kcal Electronic energy + Delta-G solvation = -17454.757074 eV Core-core repulsion = 14652.371298 eV Total energy + Delta-G solvation = -2802.385777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76178 -38.27318 -34.50121 -34.02176 -32.40384 -31.50566 -30.19463 -27.28307 -25.25880 -24.80278 -22.60804 -21.09095 -20.11075 -19.60818 -17.43859 -16.36139 -16.18324 -15.55538 -15.42153 -15.07848 -14.60066 -14.12519 -13.80070 -13.67814 -13.38805 -12.79228 -12.59255 -12.36943 -12.04980 -11.90048 -11.75634 -11.32741 -11.26027 -11.01259 -10.95656 -10.76237 -10.69789 -10.15424 -9.16210 -9.00686 -8.77670 -8.66525 -8.38014 -7.95640 -6.50496 -4.23887 3.34222 3.38065 3.40237 3.58468 3.61120 4.18923 4.34588 4.45725 4.53335 4.65669 4.99237 5.14301 5.25718 5.28218 5.31626 5.35458 5.40176 5.55789 5.57599 5.68159 5.79616 5.88747 5.96297 6.09174 6.20552 6.72413 6.88852 6.99475 7.05265 7.13928 7.24729 7.36845 7.68617 8.28409 8.50386 8.73432 9.05255 9.50128 10.89676 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.055941 B = 0.004182 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.411454 B = 6693.070626 C = 6895.462582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 H 0.062 0.938 4 C 0.089 3.911 5 H 0.048 0.952 6 N -0.844 5.844 7 C -0.118 4.118 8 C 0.039 3.961 9 N -0.484 5.484 10 C 0.025 3.975 11 C 0.501 3.499 12 O -0.539 6.539 13 N -0.712 5.712 14 C 0.242 3.758 15 C -0.623 4.623 16 H 0.057 0.943 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 1.076 2.924 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.280 1.280 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.342 0.658 27 H 0.340 0.660 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.391 0.609 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 6.473 -19.540 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.049 4.049 3 H 0.080 0.920 4 C -0.023 4.023 5 H 0.066 0.934 6 N -0.375 5.375 7 C -0.156 4.156 8 C -0.089 4.089 9 N -0.209 5.209 10 C -0.106 4.106 11 C 0.285 3.715 12 O -0.416 6.416 13 N -0.361 5.361 14 C 0.120 3.880 15 C -0.662 4.662 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.537 5.537 19 Si 0.903 3.097 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.206 1.206 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.224 0.776 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.587 5.372 -17.288 18.288 hybrid contribution -0.554 0.827 -2.305 2.511 sum -3.141 6.199 -19.593 20.789 Atomic orbital electron populations 1.21761 0.93908 1.02624 1.01389 1.22696 0.95710 0.96489 0.89975 0.92039 1.22091 0.96189 0.92733 0.91258 0.93367 1.58817 1.39759 1.25896 1.13027 1.22375 0.97601 1.00045 0.95626 1.23120 0.89328 1.01164 0.95312 1.65093 1.19086 1.35652 1.01025 1.22187 1.02802 0.94782 0.90871 1.20308 0.78166 0.88692 0.84383 1.90637 1.49628 1.15373 1.85995 1.46263 1.70563 1.12183 1.07115 1.19130 0.95549 0.91391 0.81891 1.22071 1.55395 0.95775 0.92919 0.92516 1.25883 0.93250 0.97840 1.01401 1.70757 1.44277 1.04845 1.33781 0.83447 0.76545 0.74539 0.75154 1.21291 1.21300 1.20559 0.92326 0.92606 0.91686 0.84528 0.84754 0.91039 0.90553 0.94013 0.88819 0.88406 0.92084 0.77620 0.96679 0.96585 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.34 37.16 0.35 -1.06 16 2 C 0.06 0.69 2.54 -66.08 -0.17 0.52 16 3 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 4 C 0.09 0.91 3.74 -66.33 -0.25 0.66 16 5 H 0.05 0.49 7.84 -51.93 -0.41 0.08 16 6 N -0.84 -6.86 9.14 -3.50 -0.03 -6.90 16 7 C -0.12 -1.35 6.79 -25.34 -0.17 -1.52 16 8 C 0.04 0.56 5.92 -2.18 -0.01 0.54 16 9 N -0.48 -7.18 4.66 -223.59 -1.04 -8.22 16 10 C 0.03 0.39 5.27 -4.97 -0.03 0.36 16 11 C 0.50 10.27 7.68 -10.98 -0.08 10.19 16 12 O -0.54 -13.19 15.23 5.56 0.08 -13.11 16 13 N -0.71 -15.41 5.55 -61.47 -0.34 -15.75 16 14 C 0.24 6.51 4.74 -5.20 -0.02 6.48 16 15 C -0.62 -17.37 9.28 -34.44 -0.32 -17.69 16 16 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 18 N -0.90 -27.62 13.65 55.43 0.76 -26.86 16 19 Si 1.08 24.58 29.90 -169.99 -5.08 19.50 16 20 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.06 0.60 7.31 -51.93 -0.38 0.22 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 26 H 0.34 2.23 9.08 -39.29 -0.36 1.87 16 27 H 0.34 2.27 9.02 -39.29 -0.35 1.91 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.80 7.95 -51.93 -0.41 0.39 16 30 H 0.04 0.59 7.75 -51.93 -0.40 0.18 16 31 H 0.09 1.59 7.24 -51.93 -0.38 1.21 16 32 H 0.10 1.29 7.18 -51.93 -0.37 0.92 16 33 H 0.06 0.83 7.77 -51.93 -0.40 0.43 16 34 H 0.39 7.32 8.32 -40.82 -0.34 6.98 16 35 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 36 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 37 H 0.27 8.47 7.22 -40.82 -0.29 8.17 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -33.17 302.79 -7.70 -40.87 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.80 Total: 6.88 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.81 Total: -0.98 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.66 Total: -57.73 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.17 -7.70 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379826039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.773 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds