Wall clock time and date at job start Mon Mar 30 2020 03:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.45842 * 2 1 4 4 C 1.54383 * 110.41090 * 237.59350 * 2 1 3 5 5 H 1.08998 * 110.32007 * 336.25380 * 4 2 1 6 6 N 1.46889 * 110.32751 * 98.46785 * 4 2 1 7 7 C 1.54268 * 105.05808 * 217.36830 * 4 2 1 8 8 C 1.54382 * 105.05847 * 359.97438 * 7 4 2 9 9 N 1.48554 * 104.59700 * 23.85509 * 8 7 4 10 10 C 1.46901 * 111.00208 * 200.96017 * 9 8 7 11 11 C 1.50705 * 109.46746 * 285.42181 * 10 9 8 12 12 O 1.21274 * 120.00399 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99721 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47109 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00496 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99572 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 H 1.09005 * 109.46752 * 299.03674 * 1 2 3 24 24 H 1.09001 * 109.47403 * 59.03636 * 1 2 3 25 25 H 1.08998 * 109.46544 * 179.04221 * 1 2 3 26 26 H 1.00900 * 111.00013 * 179.97438 * 6 4 2 27 27 H 1.00895 * 111.00193 * 303.95480 * 6 4 2 28 28 H 1.08999 * 110.32746 * 118.89201 * 7 4 2 29 29 H 1.09005 * 110.31744 * 241.00054 * 7 4 2 30 30 H 1.09002 * 110.40805 * 265.07685 * 8 7 4 31 31 H 1.08997 * 110.41062 * 142.63723 * 8 7 4 32 32 H 1.08992 * 109.47407 * 165.41871 * 10 9 8 33 33 H 1.09001 * 109.46874 * 45.41889 * 10 9 8 34 34 H 0.97003 * 119.99860 * 359.97438 * 13 11 10 35 35 H 1.09002 * 109.47129 * 59.99342 * 14 13 11 36 36 H 1.08998 * 109.46845 * 300.00149 * 14 13 11 37 37 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7754 -1.2216 5 1 1.3235 -1.4879 -1.5760 6 7 2.4365 0.1564 -2.2957 7 6 3.3178 -1.5188 -0.7055 8 6 3.4294 -1.1294 0.7842 9 7 2.0487 -0.7456 1.1753 10 6 2.0577 0.1024 2.3748 11 6 2.3514 -0.7444 3.5864 12 8 2.5346 -1.9369 3.4629 13 7 2.4094 -0.1767 4.8074 14 6 2.6943 -0.9999 5.9852 15 6 2.7037 -0.1299 7.2157 16 1 2.5166 0.9302 7.1291 17 6 2.9511 -0.6875 8.4522 18 7 3.1795 -1.9783 8.5577 19 14 2.9621 0.3906 9.9776 20 1 1.6353 1.0387 10.1353 21 1 4.0093 1.4343 9.8386 22 1 3.2498 -0.4440 11.1717 23 1 -0.3633 0.4988 0.8986 24 1 -0.3634 0.5287 -0.8812 25 1 -0.3632 -1.0275 -0.0172 26 1 2.7904 -0.3401 -3.0997 27 1 1.6560 0.7439 -2.5480 28 1 3.1862 -2.5961 -0.8067 29 1 4.2039 -1.1934 -1.2506 30 1 4.1078 -0.2850 0.9065 31 1 3.7694 -1.9800 1.3750 32 1 1.0838 0.5777 2.4911 33 1 2.8261 0.8687 2.2722 34 1 2.2625 0.7771 4.9062 35 1 3.6683 -1.4753 5.8693 36 1 1.9259 -1.7662 6.0874 37 1 3.1734 -2.5383 7.7656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379826039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:35 Heat of formation + Delta-G solvation = -68.247960 kcal Electronic energy + Delta-G solvation = -17455.977921 eV Core-core repulsion = 14652.371298 eV Total energy + Delta-G solvation = -2803.606623 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05342 -39.71718 -36.43212 -35.08065 -34.44521 -32.42875 -31.25733 -29.08051 -26.77679 -25.68799 -24.64366 -22.26498 -21.31628 -20.97125 -19.37947 -17.84846 -17.38815 -16.75685 -16.52219 -16.30738 -16.10310 -15.60219 -15.32809 -15.00930 -14.58622 -14.45702 -14.23214 -13.87399 -13.46835 -13.13003 -13.00540 -12.72518 -12.54385 -12.38815 -12.21874 -11.97561 -11.91484 -11.59292 -11.02022 -10.77797 -10.76305 -9.96952 -9.66133 -9.50894 -8.80900 -6.56503 1.55510 1.64039 1.68865 1.83471 2.21108 2.56327 2.98763 3.07232 3.48720 3.63998 3.69520 3.93878 4.10011 4.19719 4.22510 4.27644 4.40789 4.51057 4.73249 4.77281 4.82132 4.86616 4.94357 4.99965 5.06174 5.10222 5.31295 5.44427 5.52920 5.75009 5.90512 6.07567 6.25605 6.30092 6.61056 6.81349 7.24146 7.42522 8.58351 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.055941 B = 0.004182 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.411454 B = 6693.070626 C = 6895.462582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.063 3.937 3 H 0.069 0.931 4 C 0.096 3.904 5 H 0.051 0.949 6 N -0.844 5.844 7 C -0.113 4.113 8 C 0.036 3.964 9 N -0.509 5.509 10 C 0.040 3.960 11 C 0.496 3.504 12 O -0.584 6.584 13 N -0.707 5.707 14 C 0.255 3.745 15 C -0.630 4.630 16 H 0.077 0.923 17 C -0.033 4.033 18 N -0.930 5.930 19 Si 1.131 2.869 20 H -0.263 1.263 21 H -0.263 1.263 22 H -0.286 1.286 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.353 0.647 27 H 0.351 0.649 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.409 0.591 35 H -0.019 1.019 36 H -0.019 1.019 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 9.347 -20.730 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.045 4.045 3 H 0.087 0.913 4 C -0.016 4.016 5 H 0.069 0.931 6 N -0.377 5.377 7 C -0.152 4.152 8 C -0.092 4.092 9 N -0.234 5.234 10 C -0.091 4.091 11 C 0.283 3.717 12 O -0.464 6.464 13 N -0.358 5.358 14 C 0.132 3.868 15 C -0.668 4.668 16 H 0.095 0.905 17 C -0.232 4.232 18 N -0.566 5.566 19 Si 0.950 3.050 20 H -0.188 1.188 21 H -0.188 1.188 22 H -0.212 1.212 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.244 0.756 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.367 8.292 -18.548 20.594 hybrid contribution -0.313 -0.111 -2.023 2.050 sum -3.680 8.181 -20.571 22.442 Atomic orbital electron populations 1.21767 0.92752 1.02227 1.02664 1.22779 0.96513 0.96443 0.88802 0.91328 1.21949 0.95274 0.92850 0.91487 0.93085 1.58745 1.40264 1.25571 1.13088 1.22338 0.98991 1.00168 0.93670 1.23044 0.89461 0.99897 0.96762 1.65034 1.19322 1.36889 1.02117 1.22091 1.04900 0.93856 0.88301 1.21366 0.76324 0.88699 0.85292 1.90620 1.51273 1.17859 1.86678 1.46042 1.70862 1.12612 1.06287 1.18634 0.92619 0.91309 0.84278 1.22442 1.54497 0.96758 0.93091 0.90487 1.27695 0.91876 0.98103 1.05510 1.70907 1.46725 1.06151 1.32789 0.82783 0.78353 0.73200 0.70685 1.18755 1.18775 1.21197 0.92465 0.89882 0.92969 0.83321 0.83483 0.91371 0.89389 0.93704 0.92570 0.85689 0.89654 0.75554 1.00125 1.00088 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.34 71.98 0.67 -1.70 16 2 C 0.06 1.28 2.54 45.07 0.11 1.39 16 3 H 0.07 1.34 7.91 -2.38 -0.02 1.32 16 4 C 0.10 1.74 3.74 45.82 0.17 1.91 16 5 H 0.05 0.91 7.84 -2.39 -0.02 0.89 16 6 N -0.84 -11.08 9.14 -164.97 -1.51 -12.59 16 7 C -0.11 -2.46 6.79 31.49 0.21 -2.25 16 8 C 0.04 1.05 5.92 86.45 0.51 1.56 16 9 N -0.51 -14.55 4.66 -861.29 -4.01 -18.56 16 10 C 0.04 1.14 5.27 85.56 0.45 1.59 16 11 C 0.50 20.58 7.68 87.66 0.67 21.25 16 12 O -0.58 -29.90 15.23 -3.01 -0.05 -29.94 16 13 N -0.71 -30.77 5.55 -466.80 -2.59 -33.36 16 14 C 0.26 14.26 4.74 85.63 0.41 14.66 16 15 C -0.63 -35.17 9.28 25.60 0.24 -34.94 16 16 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 17 C -0.03 -1.91 5.46 84.66 0.46 -1.45 16 18 N -0.93 -58.59 13.65 21.45 0.29 -58.30 16 19 Si 1.13 48.30 29.90 68.60 2.05 50.36 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 23 H 0.06 1.01 7.31 -2.38 -0.02 0.99 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 26 H 0.35 3.54 9.08 -89.69 -0.81 2.73 16 27 H 0.35 3.42 9.02 -89.70 -0.81 2.62 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.69 7.95 -2.38 -0.02 1.67 16 30 H 0.04 1.23 7.75 -2.39 -0.02 1.21 16 31 H 0.06 2.01 7.24 -2.39 -0.02 2.00 16 32 H 0.13 2.93 7.18 -2.39 -0.02 2.91 16 33 H 0.09 2.08 7.77 -2.39 -0.02 2.06 16 34 H 0.41 14.74 8.32 -92.71 -0.77 13.97 16 35 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 36 H -0.02 -1.16 8.01 -2.39 -0.02 -1.18 16 37 H 0.25 16.59 7.22 -92.70 -0.67 15.92 16 Total: -1.00 -74.69 302.79 -3.11 -77.80 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -1.21 Total: 22.56 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 3.91 Total: 2.04 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -7.82 Total: -122.81 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.05 Total: 50.36 kcal Total: -74.69 -3.11 -77.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379826039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.549 kcal (2) G-P(sol) polarization free energy of solvation -74.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds