Wall clock time and date at job start Mon Mar 30 2020 04:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99937 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47161 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46867 * 304.99893 * 13 12 11 15 15 C 1.52997 * 109.47116 * 64.99634 * 13 12 11 16 16 C 1.53007 * 109.46908 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.46970 * 299.99806 * 16 15 13 18 18 C 1.52997 * 109.47147 * 60.00340 * 17 16 15 19 19 H 1.09003 * 109.47565 * 59.99643 * 18 17 16 20 20 C 1.53004 * 109.47024 * 179.97438 * 18 17 16 21 21 O 1.42897 * 109.46989 * 294.99626 * 20 18 17 22 22 C 1.52999 * 109.47001 * 299.99485 * 18 17 16 23 23 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 25 25 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 26 26 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 27 27 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 28 28 H 1.00896 * 111.00299 * 56.03874 * 11 10 9 29 29 H 1.09005 * 109.46819 * 299.99361 * 12 11 10 30 30 H 1.08993 * 109.47574 * 59.99851 * 12 11 10 31 31 H 1.09001 * 109.47142 * 300.00077 * 15 13 12 32 32 H 1.08993 * 109.47521 * 60.00387 * 15 13 12 33 33 H 1.08994 * 109.47216 * 60.00226 * 16 15 13 34 34 H 1.09005 * 109.46848 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.47008 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.47448 * 300.00224 * 17 16 15 37 37 H 1.08994 * 109.46834 * 55.00218 * 20 18 17 38 38 H 1.09002 * 109.46558 * 174.99903 * 20 18 17 39 39 H 0.96701 * 113.99771 * 180.02562 * 21 20 18 40 40 H 1.08993 * 109.47803 * 300.00178 * 22 18 17 41 41 H 1.09005 * 109.47384 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0030 13 6 1.6353 -7.3800 0.0030 14 1 0.9419 -7.3809 0.8440 15 6 0.8505 -7.4968 -1.3051 16 6 0.0499 -8.8007 -1.3049 17 6 1.0076 -9.9870 -1.1771 18 6 1.7925 -9.8702 0.1310 19 1 1.0991 -9.8707 0.9721 20 6 2.7497 -11.0569 0.2591 21 8 1.9967 -12.2657 0.3767 22 6 2.5930 -8.5664 0.1308 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8896 26 1 2.8727 -3.6047 -0.8877 27 1 2.8713 -3.6038 0.8923 28 1 0.8752 -4.9845 -0.7807 29 1 3.0646 -6.0351 -0.8861 30 1 3.0620 -6.0345 0.8938 31 1 0.1679 -6.6518 -1.3960 32 1 1.5437 -7.4959 -2.1462 33 1 -0.6434 -8.8012 -0.4639 34 1 -0.5089 -8.8841 -2.2371 35 1 0.4373 -10.9160 -1.1774 36 1 1.7010 -9.9865 -2.0181 37 1 3.3844 -11.1088 -0.6254 38 1 3.3712 -10.9283 1.1453 39 1 2.5403 -13.0609 0.4622 40 1 3.2863 -8.5658 -0.7102 41 1 3.1519 -8.4829 1.0629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380012684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:40 Heat of formation + Delta-G solvation = -98.289153 kcal Electronic energy + Delta-G solvation = -17324.101593 eV Core-core repulsion = 14622.732630 eV Total energy + Delta-G solvation = -2701.368963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.38391 -37.03186 -35.65850 -33.41398 -31.68436 -31.39397 -28.55874 -25.79707 -24.90230 -23.05180 -22.20421 -20.82275 -20.30754 -19.84460 -17.57429 -16.68890 -15.66089 -15.44356 -15.34616 -14.37081 -14.20504 -13.98920 -13.73664 -13.62309 -13.28148 -12.82094 -12.59877 -12.27549 -11.98531 -11.86043 -11.30122 -11.25852 -11.11592 -11.05627 -10.81357 -10.50379 -10.32087 -10.27748 -10.10840 -10.08681 -9.96899 -9.64004 -8.55440 -8.30076 -7.86774 -6.33662 -4.02338 3.45185 3.47578 3.66327 3.87811 4.49128 4.53625 4.62464 4.67258 4.83156 4.93225 5.06823 5.20069 5.29495 5.32456 5.41321 5.44178 5.44594 5.52299 5.57992 5.67819 5.80247 5.86405 5.98088 6.05962 6.14580 6.15643 6.23029 6.25896 6.28755 6.36084 6.49579 6.85364 7.29624 7.31510 7.52960 7.72242 7.90339 8.27489 8.49148 8.91580 9.70215 11.07567 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063536 B = 0.003362 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.591452 B = 8326.882353 C = 8601.128530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.072 3.928 11 N -0.694 5.694 12 C 0.063 3.937 13 C -0.083 4.083 14 H 0.079 0.921 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.086 4.086 19 H 0.077 0.923 20 C 0.079 3.921 21 O -0.573 6.573 22 C -0.106 4.106 23 H 0.270 0.730 24 H 0.016 0.984 25 H 0.004 0.996 26 H 0.016 0.984 27 H 0.059 0.941 28 H 0.334 0.666 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.376 0.624 40 H 0.062 0.938 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 -22.622 -1.585 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.642 4.642 8 H 0.066 0.934 9 C -0.025 4.025 10 C -0.056 4.056 11 N -0.325 5.325 12 C -0.066 4.066 13 C -0.102 4.102 14 H 0.098 0.902 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.146 4.146 18 C -0.105 4.105 19 H 0.096 0.904 20 C 0.001 3.999 21 O -0.379 6.379 22 C -0.144 4.144 23 H 0.080 0.920 24 H 0.034 0.966 25 H 0.022 0.978 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.399 -20.542 -0.949 21.029 hybrid contribution 1.164 -2.033 -0.878 2.502 sum 5.563 -22.575 -1.827 23.322 Atomic orbital electron populations 1.70767 1.06868 1.30706 1.46537 1.25850 0.96570 1.02689 0.93804 0.83538 0.74871 0.75337 0.76465 1.21521 1.21432 1.20733 1.22004 0.94227 0.92059 1.55944 0.93440 1.19194 0.94682 0.92267 0.96367 1.21999 0.96642 0.88162 0.98771 1.60614 1.20041 1.02174 1.49673 1.21950 0.94437 0.90302 0.99939 1.21141 0.97167 0.93207 0.98647 0.90213 1.21623 0.98970 0.97635 0.97292 1.21527 0.97872 0.94467 1.01733 1.21511 0.98193 0.98413 0.96488 1.21139 0.97283 0.92663 0.99367 0.90428 1.22270 0.93476 0.84749 0.99361 1.86488 1.37829 1.16679 1.96858 1.21524 0.97768 0.93193 1.01949 0.91990 0.96552 0.97798 0.96622 0.92258 0.84735 0.96003 0.91513 0.91441 0.92385 0.91889 0.92146 0.91579 0.92449 0.93783 0.93721 0.77715 0.91953 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.65 13.65 55.43 0.76 -27.89 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.60 -17.73 9.11 -34.44 -0.31 -18.04 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.33 4.54 -27.88 -0.13 0.20 16 10 C 0.07 1.59 5.62 -3.82 -0.02 1.57 16 11 N -0.69 -12.67 6.50 -113.78 -0.74 -13.41 16 12 C 0.06 0.93 5.15 -3.83 -0.02 0.91 16 13 C -0.08 -1.00 2.40 -90.62 -0.22 -1.22 16 14 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 15 C -0.12 -1.36 4.98 -26.73 -0.13 -1.49 16 16 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 17 C -0.11 -1.07 5.10 -26.74 -0.14 -1.20 16 18 C -0.09 -0.83 2.43 -90.62 -0.22 -1.05 16 19 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 20 C 0.08 0.65 6.43 37.16 0.24 0.89 16 21 O -0.57 -4.99 13.19 -35.23 -0.46 -5.45 16 22 C -0.11 -1.06 4.49 -26.73 -0.12 -1.18 16 23 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 24 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 25 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.33 5.89 6.99 -39.29 -0.27 5.62 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.85 6.68 -51.93 -0.35 0.50 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.38 1.54 9.12 45.56 0.42 1.96 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -32.34 321.76 -8.87 -41.21 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.86 Total: 1.69 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.32 Total: -21.67 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.02 Total: -41.30 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.46 Total: -5.45 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.34 -8.87 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380012684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.083 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds