Wall clock time and date at job start Mon Mar 30 2020 04:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99937 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47161 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46867 * 304.99893 * 13 12 11 15 15 C 1.52997 * 109.47116 * 64.99634 * 13 12 11 16 16 C 1.53007 * 109.46908 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.46970 * 299.99806 * 16 15 13 18 18 C 1.52997 * 109.47147 * 60.00340 * 17 16 15 19 19 H 1.09003 * 109.47565 * 59.99643 * 18 17 16 20 20 C 1.53004 * 109.47024 * 179.97438 * 18 17 16 21 21 O 1.42897 * 109.46989 * 294.99626 * 20 18 17 22 22 C 1.52999 * 109.47001 * 299.99485 * 18 17 16 23 23 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 25 25 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 26 26 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 27 27 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 28 28 H 1.00896 * 111.00299 * 56.03874 * 11 10 9 29 29 H 1.09005 * 109.46819 * 299.99361 * 12 11 10 30 30 H 1.08993 * 109.47574 * 59.99851 * 12 11 10 31 31 H 1.09001 * 109.47142 * 300.00077 * 15 13 12 32 32 H 1.08993 * 109.47521 * 60.00387 * 15 13 12 33 33 H 1.08994 * 109.47216 * 60.00226 * 16 15 13 34 34 H 1.09005 * 109.46848 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.47008 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.47448 * 300.00224 * 17 16 15 37 37 H 1.08994 * 109.46834 * 55.00218 * 20 18 17 38 38 H 1.09002 * 109.46558 * 174.99903 * 20 18 17 39 39 H 0.96701 * 113.99771 * 180.02562 * 21 20 18 40 40 H 1.08993 * 109.47803 * 300.00178 * 22 18 17 41 41 H 1.09005 * 109.47384 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0030 13 6 1.6353 -7.3800 0.0030 14 1 0.9419 -7.3809 0.8440 15 6 0.8505 -7.4968 -1.3051 16 6 0.0499 -8.8007 -1.3049 17 6 1.0076 -9.9870 -1.1771 18 6 1.7925 -9.8702 0.1310 19 1 1.0991 -9.8707 0.9721 20 6 2.7497 -11.0569 0.2591 21 8 1.9967 -12.2657 0.3767 22 6 2.5930 -8.5664 0.1308 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8896 26 1 2.8727 -3.6047 -0.8877 27 1 2.8713 -3.6038 0.8923 28 1 0.8752 -4.9845 -0.7807 29 1 3.0646 -6.0351 -0.8861 30 1 3.0620 -6.0345 0.8938 31 1 0.1679 -6.6518 -1.3960 32 1 1.5437 -7.4959 -2.1462 33 1 -0.6434 -8.8012 -0.4639 34 1 -0.5089 -8.8841 -2.2371 35 1 0.4373 -10.9160 -1.1774 36 1 1.7010 -9.9865 -2.0181 37 1 3.3844 -11.1088 -0.6254 38 1 3.3712 -10.9283 1.1453 39 1 2.5403 -13.0609 0.4622 40 1 3.2863 -8.5658 -0.7102 41 1 3.1519 -8.4829 1.0629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380012684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:40 Heat of formation + Delta-G solvation = -121.025027 kcal Electronic energy + Delta-G solvation = -17325.087495 eV Core-core repulsion = 14622.732630 eV Total energy + Delta-G solvation = -2702.354865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26938 -37.98874 -36.96894 -35.35947 -32.94199 -32.34550 -30.28565 -26.62426 -26.45703 -24.78066 -23.17433 -22.61213 -21.23639 -20.74146 -18.91319 -18.19693 -17.02840 -16.44913 -16.11505 -15.69710 -15.64167 -15.25966 -15.14764 -14.97534 -14.37545 -14.15776 -13.89177 -13.56031 -13.49086 -12.89121 -12.71604 -12.68303 -12.30543 -12.15489 -11.99223 -11.95325 -11.82658 -11.78217 -11.36583 -11.07035 -10.99711 -10.75258 -10.70250 -10.56403 -9.37862 -8.71796 -6.42373 1.52141 1.61202 1.80729 2.55909 3.12400 3.14195 3.47684 3.69755 3.77471 3.91721 4.06117 4.26120 4.33266 4.37487 4.41081 4.45665 4.52748 4.56126 4.64479 4.69202 4.72050 4.79526 4.82833 4.86284 4.93088 5.08114 5.19715 5.23019 5.26132 5.29581 5.39883 5.40593 5.42228 5.57017 5.89475 6.13366 6.17552 6.41295 6.57191 6.92973 7.40721 8.69507 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063536 B = 0.003362 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.591452 B = 8326.882353 C = 8601.128530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.040 4.040 3 Si 1.121 2.879 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.623 4.623 8 H 0.052 0.948 9 C 0.016 3.984 10 C 0.090 3.910 11 N -0.699 5.699 12 C 0.065 3.935 13 C -0.076 4.076 14 H 0.066 0.934 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.104 4.104 18 C -0.086 4.086 19 H 0.063 0.937 20 C 0.081 3.919 21 O -0.593 6.593 22 C -0.099 4.099 23 H 0.255 0.745 24 H -0.010 1.010 25 H -0.013 1.013 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.338 0.662 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.396 0.604 40 H 0.072 0.928 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -23.431 -1.904 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.237 4.237 3 Si 0.941 3.059 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.661 4.661 8 H 0.070 0.930 9 C -0.022 4.022 10 C -0.039 4.039 11 N -0.331 5.331 12 C -0.064 4.064 13 C -0.095 4.095 14 H 0.084 0.916 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.105 4.105 19 H 0.081 0.919 20 C 0.003 3.997 21 O -0.402 6.402 22 C -0.137 4.137 23 H 0.065 0.935 24 H 0.009 0.991 25 H 0.006 0.994 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.245 0.755 40 H 0.091 0.909 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.170 -21.409 -1.267 22.316 hybrid contribution 0.579 -1.862 -0.772 2.097 sum 6.748 -23.270 -2.040 24.315 Atomic orbital electron populations 1.70909 1.08001 1.29896 1.48554 1.27536 0.96605 1.07009 0.92540 0.82905 0.74097 0.70779 0.78119 1.19239 1.19285 1.20787 1.22449 0.94768 0.93366 1.55535 0.92955 1.19095 0.95012 0.93819 0.94244 1.21640 0.95299 0.88280 0.98731 1.60532 1.20641 1.01858 1.50088 1.22039 0.94206 0.89867 1.00307 1.21057 0.97155 0.92850 0.98413 0.91590 1.21596 0.98866 0.97739 0.97160 1.21499 0.97853 0.94157 1.01827 1.21464 0.98085 0.97689 0.96887 1.21106 0.97352 0.93341 0.98664 0.91883 1.22228 0.92973 0.84059 1.00407 1.86434 1.39107 1.17696 1.96932 1.21451 0.97309 0.92188 1.02759 0.93544 0.99128 0.99438 0.96405 0.92428 0.84388 0.95215 0.91371 0.92926 0.91815 0.92622 0.91446 0.91977 0.91703 0.92571 0.92752 0.75486 0.90939 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.65 21.45 0.29 -59.45 16 2 C -0.04 -2.36 5.46 84.66 0.46 -1.89 16 3 Si 1.12 50.96 29.90 68.60 2.05 53.01 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.62 -36.76 9.11 25.60 0.23 -36.53 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.02 0.86 4.54 29.85 0.14 0.99 16 10 C 0.09 3.92 5.62 86.31 0.49 4.40 16 11 N -0.70 -25.45 6.50 -513.89 -3.34 -28.79 16 12 C 0.06 1.82 5.15 86.31 0.44 2.27 16 13 C -0.08 -1.76 2.40 -10.79 -0.03 -1.78 16 14 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 15 C -0.12 -2.58 4.98 30.60 0.15 -2.43 16 16 C -0.12 -2.29 5.92 30.60 0.18 -2.11 16 17 C -0.10 -1.87 5.10 30.59 0.16 -1.71 16 18 C -0.09 -1.52 2.43 -10.79 -0.03 -1.55 16 19 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 20 C 0.08 1.14 6.43 71.98 0.46 1.61 16 21 O -0.59 -9.15 13.19 -148.98 -1.97 -11.11 16 22 C -0.10 -1.78 4.49 30.60 0.14 -1.65 16 23 H 0.26 16.55 7.22 -92.70 -0.67 15.88 16 24 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 25 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 28 H 0.34 11.97 6.99 -89.70 -0.63 11.34 16 29 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.32 6.68 -2.39 -0.02 1.30 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 35 H 0.06 1.19 7.82 -2.38 -0.02 1.17 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.40 2.40 9.12 -74.06 -0.68 1.72 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -69.09 321.76 -0.38 -69.47 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.22 Total: 17.25 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 2.80 Total: -40.39 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -3.05 Total: -88.23 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.97 Total: -11.11 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -69.09 -0.38 -69.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380012684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.554 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds