Wall clock time and date at job start Mon Mar 30 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99611 * 2 1 4 4 H 1.48504 * 109.47203 * 240.00411 * 3 2 1 5 5 H 1.48502 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47219 * 120.00200 * 3 2 1 7 7 C 1.37869 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47288 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47219 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00046 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47098 * 179.97438 * 12 11 10 14 14 H 1.08992 * 109.47514 * 305.00509 * 13 12 11 15 15 C 1.53002 * 109.46637 * 65.00379 * 13 12 11 16 16 C 1.52997 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47452 * 300.00239 * 16 15 13 18 18 C 1.52999 * 109.47159 * 59.99536 * 17 16 15 19 19 H 1.08996 * 109.46929 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46623 * 60.00365 * 18 17 16 21 21 O 1.42899 * 109.46855 * 64.99982 * 20 18 17 22 22 C 1.52997 * 109.47317 * 300.00546 * 18 17 16 23 23 H 0.96997 * 120.00564 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47141 * 60.00209 * 9 7 2 25 25 H 1.09001 * 109.47629 * 300.00199 * 9 7 2 26 26 H 1.08991 * 109.46919 * 60.00089 * 10 9 7 27 27 H 1.09001 * 109.47006 * 299.99773 * 10 9 7 28 28 H 1.00904 * 110.99916 * 56.04717 * 11 10 9 29 29 H 1.09008 * 109.46954 * 60.00087 * 12 11 10 30 30 H 1.09000 * 109.47139 * 300.00330 * 12 11 10 31 31 H 1.08993 * 109.47662 * 299.99908 * 15 13 12 32 32 H 1.09002 * 109.47075 * 60.00414 * 15 13 12 33 33 H 1.09002 * 109.47153 * 60.00231 * 16 15 13 34 34 H 1.09001 * 109.47289 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.47360 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.46935 * 300.00125 * 17 16 15 37 37 H 1.08996 * 109.46945 * 184.99514 * 20 18 17 38 38 H 1.09000 * 109.47314 * 304.99636 * 20 18 17 39 39 H 0.96703 * 113.99727 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.47153 * 299.99641 * 22 18 17 41 41 H 1.09001 * 109.46832 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9343 -0.0012 12 6 2.4355 -6.0758 -0.0018 13 6 1.6355 -7.3800 -0.0018 14 1 0.9433 -7.3817 0.8402 15 6 0.8488 -7.4956 -1.3089 16 6 0.0492 -8.8000 -1.3092 17 6 1.0079 -9.9859 -1.1843 18 6 1.7947 -9.8702 0.1227 19 1 2.4772 -10.7153 0.2119 20 6 0.8230 -9.8732 1.3047 21 8 0.1600 -11.1372 1.3731 22 6 2.5942 -8.5658 0.1230 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8721 -3.6043 -0.8906 28 1 0.8749 -4.9841 -0.7828 29 1 3.0635 -6.0352 0.8883 30 1 3.0635 -6.0343 -0.8917 31 1 0.1661 -6.6506 -1.3982 32 1 1.5409 -7.4940 -2.1510 33 1 -0.6430 -8.8021 -0.4672 34 1 -0.5109 -8.8826 -2.2406 35 1 0.4383 -10.9153 -1.1850 36 1 1.7000 -9.9838 -2.0264 37 1 1.3748 -9.7019 2.2290 38 1 0.0849 -9.0825 1.1703 39 1 -0.4723 -11.2108 2.1010 40 1 3.2864 -8.5637 -0.7190 41 1 3.1543 -8.4833 1.0545 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380012685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:42 Heat of formation + Delta-G solvation = -89.970554 kcal Electronic energy + Delta-G solvation = -17537.129217 eV Core-core repulsion = 14836.120976 eV Total energy + Delta-G solvation = -2701.008242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65716 -36.74655 -35.48229 -33.12638 -31.46195 -31.29039 -28.73999 -25.96961 -25.12940 -23.26174 -22.41085 -20.77519 -20.39474 -18.76487 -17.50580 -16.28497 -15.94403 -15.46269 -14.93209 -14.57734 -14.45295 -13.92026 -13.71930 -13.52576 -12.95965 -12.72083 -12.33885 -12.27407 -12.09629 -11.79001 -11.46670 -11.24332 -11.07932 -10.93676 -10.87660 -10.59081 -10.42515 -10.13310 -10.02640 -9.94362 -9.80816 -9.31114 -9.13942 -8.34055 -7.77576 -5.98672 -4.01370 3.33997 3.38211 3.40667 4.04658 4.42307 4.52146 4.63413 4.80869 4.86884 4.99977 5.16120 5.30257 5.33761 5.37013 5.39897 5.47328 5.52750 5.57809 5.61402 5.77666 5.88073 5.92090 6.02261 6.04569 6.17491 6.21710 6.27239 6.37198 6.37734 6.43841 6.53747 7.00114 7.44273 7.51599 7.74769 7.84938 7.99344 8.10332 8.45068 9.05765 9.62295 11.12751 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051860 B = 0.003576 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.789169 B = 7828.804500 C = 7885.867836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.692 5.692 12 C 0.062 3.938 13 C -0.088 4.088 14 H 0.079 0.921 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.084 4.084 19 H 0.072 0.928 20 C 0.074 3.926 21 O -0.576 6.576 22 C -0.108 4.108 23 H 0.261 0.739 24 H 0.013 0.987 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.014 0.986 28 H 0.335 0.665 29 H 0.066 0.934 30 H 0.021 0.979 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.377 0.623 40 H 0.067 0.933 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -20.474 -0.035 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.067 4.067 13 C -0.106 4.106 14 H 0.098 0.902 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.147 4.147 18 C -0.102 4.102 19 H 0.091 0.909 20 C -0.003 4.003 21 O -0.381 6.381 22 C -0.146 4.146 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.153 0.847 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.223 0.777 40 H 0.085 0.915 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.913 -20.460 0.120 20.549 hybrid contribution 0.500 1.182 -0.403 1.345 sum 2.413 -19.278 -0.283 19.430 Atomic orbital electron populations 1.69961 1.06030 1.26695 1.50605 1.25001 0.94847 0.99200 0.95299 0.86646 0.79563 0.83108 0.78591 1.20300 1.21260 1.20216 1.21150 0.92954 0.91075 1.50960 0.92830 1.19064 0.94028 0.90461 0.97656 1.22150 0.96964 0.88639 0.98531 1.60632 1.19885 1.02141 1.49715 1.21964 0.94488 0.90395 0.99891 1.21230 0.97264 0.93519 0.98610 0.90248 1.21624 0.98994 0.97576 0.97334 1.21562 0.97954 0.94516 1.01674 1.21486 0.98202 0.98567 0.96487 1.21073 0.96511 0.98102 0.94548 0.90912 1.22416 0.95145 0.85201 0.97585 1.86444 1.60223 1.35889 1.55571 1.21559 0.97594 0.93229 1.02180 0.92938 0.96872 0.95685 0.92450 0.96802 0.84692 0.91594 0.96037 0.91368 0.92334 0.91811 0.92232 0.91616 0.92274 0.93910 0.92543 0.77690 0.91451 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 11 N -0.69 -12.48 6.50 -113.78 -0.74 -13.22 16 12 C 0.06 0.90 5.14 -3.83 -0.02 0.88 16 13 C -0.09 -1.03 2.12 -90.62 -0.19 -1.22 16 14 H 0.08 1.00 6.55 -51.93 -0.34 0.66 16 15 C -0.12 -1.34 4.97 -26.73 -0.13 -1.48 16 16 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 17 C -0.11 -1.09 5.35 -26.73 -0.14 -1.23 16 18 C -0.08 -0.82 2.90 -90.62 -0.26 -1.08 16 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 20 C 0.07 0.70 5.72 37.16 0.21 0.92 16 21 O -0.58 -5.50 13.20 -35.23 -0.46 -5.96 16 22 C -0.11 -1.08 4.73 -26.73 -0.13 -1.21 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.33 5.85 6.98 -39.29 -0.27 5.58 16 29 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.85 6.68 -51.93 -0.35 0.50 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.55 4.83 -51.93 -0.25 0.30 16 39 H 0.38 2.02 9.12 45.56 0.42 2.43 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -31.14 316.05 -8.69 -39.83 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.57 Total: 1.88 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.39 Total: -17.67 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.00 Total: -39.65 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.46 Total: -5.96 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.14 -8.69 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380012685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.143 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds