Wall clock time and date at job start Mon Mar 30 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99611 * 2 1 4 4 H 1.48504 * 109.47203 * 240.00411 * 3 2 1 5 5 H 1.48502 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47219 * 120.00200 * 3 2 1 7 7 C 1.37869 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47288 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47219 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00046 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47098 * 179.97438 * 12 11 10 14 14 H 1.08992 * 109.47514 * 305.00509 * 13 12 11 15 15 C 1.53002 * 109.46637 * 65.00379 * 13 12 11 16 16 C 1.52997 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47452 * 300.00239 * 16 15 13 18 18 C 1.52999 * 109.47159 * 59.99536 * 17 16 15 19 19 H 1.08996 * 109.46929 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46623 * 60.00365 * 18 17 16 21 21 O 1.42899 * 109.46855 * 64.99982 * 20 18 17 22 22 C 1.52997 * 109.47317 * 300.00546 * 18 17 16 23 23 H 0.96997 * 120.00564 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47141 * 60.00209 * 9 7 2 25 25 H 1.09001 * 109.47629 * 300.00199 * 9 7 2 26 26 H 1.08991 * 109.46919 * 60.00089 * 10 9 7 27 27 H 1.09001 * 109.47006 * 299.99773 * 10 9 7 28 28 H 1.00904 * 110.99916 * 56.04717 * 11 10 9 29 29 H 1.09008 * 109.46954 * 60.00087 * 12 11 10 30 30 H 1.09000 * 109.47139 * 300.00330 * 12 11 10 31 31 H 1.08993 * 109.47662 * 299.99908 * 15 13 12 32 32 H 1.09002 * 109.47075 * 60.00414 * 15 13 12 33 33 H 1.09002 * 109.47153 * 60.00231 * 16 15 13 34 34 H 1.09001 * 109.47289 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.47360 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.46935 * 300.00125 * 17 16 15 37 37 H 1.08996 * 109.46945 * 184.99514 * 20 18 17 38 38 H 1.09000 * 109.47314 * 304.99636 * 20 18 17 39 39 H 0.96703 * 113.99727 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.47153 * 299.99641 * 22 18 17 41 41 H 1.09001 * 109.46832 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9343 -0.0012 12 6 2.4355 -6.0758 -0.0018 13 6 1.6355 -7.3800 -0.0018 14 1 0.9433 -7.3817 0.8402 15 6 0.8488 -7.4956 -1.3089 16 6 0.0492 -8.8000 -1.3092 17 6 1.0079 -9.9859 -1.1843 18 6 1.7947 -9.8702 0.1227 19 1 2.4772 -10.7153 0.2119 20 6 0.8230 -9.8732 1.3047 21 8 0.1600 -11.1372 1.3731 22 6 2.5942 -8.5658 0.1230 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8721 -3.6043 -0.8906 28 1 0.8749 -4.9841 -0.7828 29 1 3.0635 -6.0352 0.8883 30 1 3.0635 -6.0343 -0.8917 31 1 0.1661 -6.6506 -1.3982 32 1 1.5409 -7.4940 -2.1510 33 1 -0.6430 -8.8021 -0.4672 34 1 -0.5109 -8.8826 -2.2406 35 1 0.4383 -10.9153 -1.1850 36 1 1.7000 -9.9838 -2.0264 37 1 1.3748 -9.7019 2.2290 38 1 0.0849 -9.0825 1.1703 39 1 -0.4723 -11.2108 2.1010 40 1 3.2864 -8.5637 -0.7190 41 1 3.1543 -8.4833 1.0545 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380012685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:42 Heat of formation + Delta-G solvation = -111.747186 kcal Electronic energy + Delta-G solvation = -17538.073523 eV Core-core repulsion = 14836.120976 eV Total energy + Delta-G solvation = -2701.952547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53026 -37.81523 -36.70459 -35.06818 -32.90184 -32.11840 -30.43817 -26.85405 -26.65946 -24.80847 -23.33030 -22.33946 -21.70051 -19.58998 -18.51042 -18.21786 -16.95716 -16.74370 -16.44308 -15.80550 -15.50290 -15.22500 -14.97116 -14.67362 -14.21014 -14.10460 -13.81481 -13.30320 -13.15885 -13.01323 -12.90520 -12.78629 -12.42953 -12.33679 -12.09344 -12.04631 -11.74880 -11.50366 -11.34499 -11.19332 -10.90617 -10.80239 -10.59997 -10.56281 -9.26432 -8.20589 -6.32563 1.40218 1.43647 1.51636 2.40453 3.12573 3.33559 3.39653 3.78307 3.80000 3.97038 4.13758 4.28866 4.36986 4.48585 4.52387 4.56741 4.58407 4.62892 4.65531 4.76400 4.76992 4.82366 4.92472 5.05668 5.06691 5.12405 5.19713 5.31021 5.35994 5.42829 5.45327 5.50440 5.59368 5.66953 5.78609 6.14587 6.29636 6.55802 6.84565 6.92458 7.36819 8.91401 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051860 B = 0.003576 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.789169 B = 7828.804500 C = 7885.867836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.698 5.698 12 C 0.063 3.937 13 C -0.079 4.079 14 H 0.072 0.928 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.083 4.083 19 H 0.076 0.924 20 C 0.074 3.926 21 O -0.590 6.590 22 C -0.101 4.101 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.006 1.006 26 H 0.057 0.943 27 H 0.017 0.983 28 H 0.337 0.663 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.393 0.607 40 H 0.073 0.927 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -20.959 -0.073 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.330 5.330 12 C -0.066 4.066 13 C -0.098 4.098 14 H 0.091 0.909 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.144 4.144 18 C -0.102 4.102 19 H 0.094 0.906 20 C -0.003 4.003 21 O -0.398 6.398 22 C -0.139 4.139 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.012 0.988 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.243 0.757 40 H 0.091 0.909 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.189 -20.973 0.091 21.214 hybrid contribution 0.047 1.277 -0.379 1.333 sum 3.236 -19.696 -0.288 19.962 Atomic orbital electron populations 1.70100 1.07844 1.27913 1.51297 1.25989 0.95787 1.03417 0.94547 0.85463 0.78241 0.77881 0.79219 1.19123 1.20742 1.19107 1.21597 0.93556 0.92305 1.51144 0.92144 1.18922 0.94318 0.92359 0.94992 1.21775 0.95585 0.88625 0.98608 1.60553 1.20471 1.01862 1.50071 1.22052 0.94272 0.90058 1.00175 1.21140 0.97230 0.92861 0.98541 0.90948 1.21596 0.98864 0.97705 0.97220 1.21519 0.97896 0.94055 1.01826 1.21451 0.98115 0.97982 0.96833 1.21067 0.96584 0.97897 0.94615 0.90560 1.22382 0.95054 0.85109 0.97754 1.86399 1.60860 1.35787 1.56774 1.21502 0.97206 0.92353 1.02840 0.92699 0.99137 0.98754 0.92432 0.96520 0.84431 0.91407 0.95495 0.92798 0.92035 0.92169 0.91730 0.91977 0.91702 0.93307 0.93098 0.75735 0.90863 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.44 0.28 -57.17 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.72 5.23 29.85 0.16 1.87 16 10 C 0.08 3.58 5.62 86.30 0.49 4.06 16 11 N -0.70 -25.05 6.50 -513.88 -3.34 -28.39 16 12 C 0.06 1.76 5.14 86.30 0.44 2.20 16 13 C -0.08 -1.76 2.12 -10.79 -0.02 -1.79 16 14 H 0.07 1.75 6.55 -2.39 -0.02 1.73 16 15 C -0.12 -2.54 4.97 30.59 0.15 -2.39 16 16 C -0.12 -2.24 5.65 30.60 0.17 -2.07 16 17 C -0.11 -1.92 5.35 30.60 0.16 -1.76 16 18 C -0.08 -1.47 2.90 -10.79 -0.03 -1.50 16 19 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 20 C 0.07 1.30 5.72 71.98 0.41 1.71 16 21 O -0.59 -10.34 13.20 -148.98 -1.97 -12.30 16 22 C -0.10 -1.83 4.73 30.59 0.14 -1.68 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.34 11.87 6.98 -89.69 -0.63 11.25 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 1.33 6.68 -2.39 -0.02 1.31 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.21 6.32 -2.39 -0.02 1.20 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.18 7.82 -2.39 -0.02 1.17 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.94 4.83 -2.39 -0.01 0.93 16 39 H 0.39 3.63 9.12 -74.05 -0.68 2.95 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.00 316.05 -0.53 -66.53 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.30 Total: 17.14 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 2.77 Total: -32.36 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -3.06 Total: -85.56 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.97 Total: -12.30 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.00 -0.53 -66.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380012685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.219 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds