Wall clock time and date at job start Mon Mar 30 2020 03:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00313 * 2 1 4 4 C 1.53002 * 109.46896 * 180.02562 * 3 2 1 5 5 O 1.42890 * 113.26179 * 52.04929 * 4 3 2 6 6 C 1.53517 * 114.16684 * 185.00199 * 4 3 2 7 7 N 1.47478 * 87.93298 * 139.85877 * 6 4 3 8 8 C 1.46903 * 110.99994 * 221.29821 * 7 6 4 9 9 C 1.52993 * 109.47102 * 174.96426 * 8 7 6 10 10 C 1.50707 * 115.55199 * 54.90391 * 9 8 7 11 11 H 1.07991 * 119.99939 * 266.33110 * 10 9 8 12 12 C 1.37878 * 119.99927 * 86.33237 * 10 9 8 13 13 N 1.31518 * 119.99747 * 351.75337 * 12 10 9 14 14 Si 1.86790 * 120.00090 * 171.75427 * 12 10 9 15 15 H 1.48505 * 109.47314 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47540 * 119.99719 * 14 12 10 17 17 H 1.48504 * 109.47045 * 239.99924 * 14 12 10 18 18 C 1.53001 * 117.49929 * 269.23619 * 9 8 7 19 19 C 1.53004 * 117.49676 * 200.57530 * 9 8 7 20 20 C 1.47482 * 87.83497 * 332.98800 * 7 6 4 21 21 H 1.09000 * 109.46891 * 59.99891 * 1 2 3 22 22 H 1.08993 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46684 * 300.00319 * 1 2 3 24 24 H 1.08995 * 109.47018 * 60.00297 * 3 2 1 25 25 H 1.09001 * 109.47085 * 299.99977 * 3 2 1 26 26 H 0.96704 * 114.00073 * 312.95077 * 5 4 3 27 27 H 1.09005 * 113.47763 * 25.08990 * 6 4 3 28 28 H 1.08993 * 113.47287 * 254.62669 * 6 4 3 29 29 H 1.08995 * 109.47196 * 54.96002 * 8 7 6 30 30 H 1.09003 * 109.46727 * 294.96171 * 8 7 6 31 31 H 0.97001 * 119.99752 * 180.02562 * 13 12 10 32 32 H 1.09000 * 117.49566 * 359.97438 * 18 9 8 33 33 H 1.08994 * 117.49999 * 145.02492 * 18 9 8 34 34 H 1.09003 * 117.49516 * 214.97476 * 19 9 8 35 35 H 1.08994 * 117.49796 * 359.97290 * 19 9 8 36 36 H 1.09003 * 113.47520 * 141.78230 * 20 7 6 37 37 H 1.09004 * 113.47501 * 272.24483 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1845 -0.0006 5 8 4.0339 0.3353 -1.0362 6 6 4.2724 2.5257 0.1214 7 7 5.2291 1.8572 1.0230 8 6 5.5732 2.7215 2.1599 9 6 6.4655 1.9507 3.1347 10 6 7.7141 1.3525 2.5392 11 1 7.7088 0.3317 2.1870 12 6 8.8630 2.1087 2.4439 13 7 8.8289 3.3942 2.7198 14 14 10.4680 1.3075 1.9231 15 1 10.2408 -0.1384 1.6719 16 1 10.9641 1.9540 0.6816 17 1 11.4752 1.4696 3.0022 18 6 5.7775 1.1744 4.2594 19 6 6.5443 2.4612 4.5749 20 6 4.1497 0.9181 1.3808 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6888 1.8463 0.8900 25 1 1.6887 1.8464 -0.8900 26 1 3.5680 -0.5088 -1.1109 27 1 3.6838 3.3016 0.6110 28 1 4.7196 2.8621 -0.8139 29 1 4.6611 3.0316 2.6697 30 1 6.1051 3.6019 1.7990 31 1 9.6372 3.9263 2.6525 32 1 4.6892 1.2133 4.3051 33 1 6.2281 0.2314 4.5689 34 1 7.4991 2.3640 5.0918 35 1 5.9608 3.3464 4.8277 36 1 4.4930 -0.1080 1.5129 37 1 3.5284 1.2649 2.2065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384028328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:16 Heat of formation + Delta-G solvation = -23.205043 kcal Electronic energy + Delta-G solvation = -18035.682037 eV Core-core repulsion = 15201.735870 eV Total energy + Delta-G solvation = -2833.946166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18010 -37.72816 -36.36050 -34.80116 -31.76339 -29.98853 -27.50271 -25.89244 -25.51459 -25.08535 -22.13603 -21.01277 -19.60627 -18.92047 -16.89643 -16.59835 -16.06276 -15.92387 -15.12940 -14.70774 -14.41366 -14.06100 -13.81678 -13.33238 -13.09040 -12.76370 -12.39287 -12.04900 -11.72760 -11.56508 -11.25405 -10.96836 -10.87959 -10.56614 -10.36128 -10.29908 -10.01961 -9.90609 -9.50418 -9.30491 -8.73396 -8.29571 -8.04034 -7.89650 -5.88879 -3.88544 3.39751 3.47569 3.49983 3.53392 4.14627 4.55049 4.63151 4.70939 4.97956 5.09788 5.19942 5.26433 5.35210 5.39576 5.44070 5.45491 5.69102 5.80070 6.00250 6.04096 6.15932 6.25239 6.41123 6.49229 6.51519 6.77382 6.85888 6.92520 7.12514 7.30660 7.52054 7.53135 7.92120 8.00000 8.05898 8.61997 9.10280 9.74206 11.21618 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.006240 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.043029 B = 4485.900438 C = 4853.194091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.045 3.955 4 C 0.105 3.895 5 O -0.523 6.523 6 C 0.007 3.993 7 N -0.422 5.422 8 C 0.067 3.933 9 C 0.056 3.944 10 C -0.464 4.464 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.287 1.287 18 C -0.215 4.215 19 C -0.159 4.159 20 C -0.011 4.011 21 H 0.040 0.960 22 H 0.086 0.914 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.379 0.621 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.006 0.994 30 H 0.080 0.920 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.423 -2.691 -3.967 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.032 4.032 4 C 0.063 3.937 5 O -0.327 6.327 6 C -0.122 4.122 7 N -0.143 5.143 8 C -0.062 4.062 9 C 0.055 3.945 10 C -0.502 4.502 11 H 0.078 0.922 12 C -0.134 4.134 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.213 1.213 18 C -0.252 4.252 19 C -0.198 4.198 20 C -0.141 4.141 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.227 0.773 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.024 0.976 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.096 -2.414 -4.273 14.926 hybrid contribution -0.472 -0.053 0.356 0.594 sum -14.568 -2.467 -3.917 15.286 Atomic orbital electron populations 1.22739 0.80899 1.02764 0.99941 1.87812 1.19860 1.27803 1.95428 1.23193 0.94008 0.85111 1.00890 1.22336 0.88172 0.93737 0.89465 1.86515 1.61230 1.31814 1.53177 1.23954 0.94302 0.93530 1.00401 1.69073 1.23491 1.09699 1.12076 1.22270 0.95794 0.96498 0.91607 1.18733 0.94551 0.95745 0.85476 1.20303 0.92604 0.98110 1.39223 0.92246 1.24917 0.98666 0.94653 0.95150 1.70025 1.27793 1.05138 1.49549 0.86599 0.83965 0.79858 0.77949 1.19766 1.21209 1.21343 1.23031 0.95914 0.96077 1.10176 1.22518 0.99848 0.94231 1.03152 1.24387 0.93538 1.01140 0.95019 0.94121 0.89558 0.94064 0.92260 0.92481 0.77318 0.91177 0.89183 0.97554 0.90123 0.93458 0.92297 0.90544 0.90038 0.92213 0.89532 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.69 10.00 -44.96 -0.45 -5.14 16 3 C 0.05 0.55 5.62 37.16 0.21 0.76 16 4 C 0.11 1.63 1.78 -90.09 -0.16 1.47 16 5 O -0.52 -8.62 13.55 -44.96 -0.61 -9.23 16 6 C 0.01 0.13 7.14 -7.55 -0.05 0.07 16 7 N -0.42 -8.96 6.07 -244.62 -1.49 -10.45 16 8 C 0.07 1.52 4.65 -3.83 -0.02 1.50 16 9 C 0.06 1.39 1.42 -155.66 -0.22 1.17 16 10 C -0.46 -13.09 8.53 -34.44 -0.29 -13.38 16 11 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 12 C 0.07 1.92 5.37 -17.82 -0.10 1.82 16 13 N -0.89 -25.76 12.93 55.43 0.72 -25.04 16 14 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 C -0.21 -4.78 9.61 -26.69 -0.26 -5.04 16 19 C -0.16 -3.82 9.45 -26.69 -0.25 -4.07 16 20 C -0.01 -0.20 6.59 -7.55 -0.05 -0.25 16 21 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.66 8.01 -51.93 -0.42 0.25 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.38 4.95 8.38 45.56 0.38 5.33 16 27 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 29 H 0.01 0.13 7.51 -51.93 -0.39 -0.26 16 30 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.06 1.07 7.49 -51.93 -0.39 0.68 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -31.25 309.49 -7.68 -38.93 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.41 Total: 3.70 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.08 Total: -14.55 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.77 Total: -35.49 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.06 Total: -14.37 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.25 -7.68 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384028328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.728 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds