Wall clock time and date at job start Mon Mar 30 2020 03:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00313 * 2 1 4 4 C 1.53002 * 109.46896 * 180.02562 * 3 2 1 5 5 O 1.42890 * 113.26179 * 52.04929 * 4 3 2 6 6 C 1.53517 * 114.16684 * 185.00199 * 4 3 2 7 7 N 1.47478 * 87.93298 * 139.85877 * 6 4 3 8 8 C 1.46903 * 110.99994 * 221.29821 * 7 6 4 9 9 C 1.52993 * 109.47102 * 174.96426 * 8 7 6 10 10 C 1.50707 * 115.55199 * 54.90391 * 9 8 7 11 11 H 1.07991 * 119.99939 * 266.33110 * 10 9 8 12 12 C 1.37878 * 119.99927 * 86.33237 * 10 9 8 13 13 N 1.31518 * 119.99747 * 351.75337 * 12 10 9 14 14 Si 1.86790 * 120.00090 * 171.75427 * 12 10 9 15 15 H 1.48505 * 109.47314 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47540 * 119.99719 * 14 12 10 17 17 H 1.48504 * 109.47045 * 239.99924 * 14 12 10 18 18 C 1.53001 * 117.49929 * 269.23619 * 9 8 7 19 19 C 1.53004 * 117.49676 * 200.57530 * 9 8 7 20 20 C 1.47482 * 87.83497 * 332.98800 * 7 6 4 21 21 H 1.09000 * 109.46891 * 59.99891 * 1 2 3 22 22 H 1.08993 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46684 * 300.00319 * 1 2 3 24 24 H 1.08995 * 109.47018 * 60.00297 * 3 2 1 25 25 H 1.09001 * 109.47085 * 299.99977 * 3 2 1 26 26 H 0.96704 * 114.00073 * 312.95077 * 5 4 3 27 27 H 1.09005 * 113.47763 * 25.08990 * 6 4 3 28 28 H 1.08993 * 113.47287 * 254.62669 * 6 4 3 29 29 H 1.08995 * 109.47196 * 54.96002 * 8 7 6 30 30 H 1.09003 * 109.46727 * 294.96171 * 8 7 6 31 31 H 0.97001 * 119.99752 * 180.02562 * 13 12 10 32 32 H 1.09000 * 117.49566 * 359.97438 * 18 9 8 33 33 H 1.08994 * 117.49999 * 145.02492 * 18 9 8 34 34 H 1.09003 * 117.49516 * 214.97476 * 19 9 8 35 35 H 1.08994 * 117.49796 * 359.97290 * 19 9 8 36 36 H 1.09003 * 113.47520 * 141.78230 * 20 7 6 37 37 H 1.09004 * 113.47501 * 272.24483 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1845 -0.0006 5 8 4.0339 0.3353 -1.0362 6 6 4.2724 2.5257 0.1214 7 7 5.2291 1.8572 1.0230 8 6 5.5732 2.7215 2.1599 9 6 6.4655 1.9507 3.1347 10 6 7.7141 1.3525 2.5392 11 1 7.7088 0.3317 2.1870 12 6 8.8630 2.1087 2.4439 13 7 8.8289 3.3942 2.7198 14 14 10.4680 1.3075 1.9231 15 1 10.2408 -0.1384 1.6719 16 1 10.9641 1.9540 0.6816 17 1 11.4752 1.4696 3.0022 18 6 5.7775 1.1744 4.2594 19 6 6.5443 2.4612 4.5749 20 6 4.1497 0.9181 1.3808 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6888 1.8463 0.8900 25 1 1.6887 1.8464 -0.8900 26 1 3.5680 -0.5088 -1.1109 27 1 3.6838 3.3016 0.6110 28 1 4.7196 2.8621 -0.8139 29 1 4.6611 3.0316 2.6697 30 1 6.1051 3.6019 1.7990 31 1 9.6372 3.9263 2.6525 32 1 4.6892 1.2133 4.3051 33 1 6.2281 0.2314 4.5689 34 1 7.4991 2.3640 5.0918 35 1 5.9608 3.3464 4.8277 36 1 4.4930 -0.1080 1.5129 37 1 3.5284 1.2649 2.2065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384028328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:16 Heat of formation + Delta-G solvation = -47.665474 kcal Electronic energy + Delta-G solvation = -18036.742721 eV Core-core repulsion = 15201.735870 eV Total energy + Delta-G solvation = -2835.006850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.53174 -38.80359 -37.96342 -36.18593 -33.90755 -31.27096 -28.66510 -27.43305 -27.02080 -26.45424 -23.57430 -22.86383 -21.04059 -20.71211 -18.16026 -17.85051 -17.46865 -16.96022 -16.62096 -16.39142 -16.00333 -15.72823 -15.05233 -14.85193 -14.47282 -14.03747 -13.95381 -13.35205 -13.18405 -12.98923 -12.86243 -12.79701 -12.33631 -12.30325 -12.20391 -12.02189 -11.51244 -11.32463 -10.82952 -10.72956 -10.58060 -10.34991 -9.88833 -9.47705 -8.04816 -6.09074 1.39404 1.42212 1.53085 2.47622 2.62747 2.91986 3.25073 3.30616 3.48569 3.59312 3.94686 4.14949 4.28483 4.36096 4.41707 4.50055 4.54776 4.57731 4.61845 4.65703 4.67673 4.72045 4.88867 4.89686 4.96733 4.98410 5.11642 5.25860 5.61407 5.69267 5.71051 5.86422 6.14346 6.33387 6.56816 6.86381 6.92842 7.55435 9.04824 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.006240 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.043029 B = 4485.900438 C = 4853.194091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.056 3.944 4 C 0.118 3.882 5 O -0.544 6.544 6 C 0.007 3.993 7 N -0.466 5.466 8 C 0.082 3.918 9 C 0.025 3.975 10 C -0.476 4.476 11 H 0.039 0.961 12 C 0.023 3.977 13 N -0.911 5.911 14 Si 0.942 3.058 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.280 1.280 18 C -0.188 4.188 19 C -0.163 4.163 20 C -0.010 4.010 21 H 0.053 0.947 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.392 0.608 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.256 0.744 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.420 -2.958 -4.121 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.022 4.022 4 C 0.076 3.924 5 O -0.351 6.351 6 C -0.122 4.122 7 N -0.188 5.188 8 C -0.047 4.047 9 C 0.025 3.975 10 C -0.514 4.514 11 H 0.057 0.943 12 C -0.176 4.176 13 N -0.550 5.550 14 Si 0.769 3.231 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.206 1.206 18 C -0.225 4.225 19 C -0.202 4.202 20 C -0.139 4.139 21 H 0.071 0.929 22 H 0.117 0.883 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.242 0.758 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.108 -2.700 -4.427 16.923 hybrid contribution 0.111 -0.029 0.384 0.401 sum -15.998 -2.730 -4.044 16.725 Atomic orbital electron populations 1.22951 0.78924 1.04015 1.01006 1.87777 1.21941 1.27650 1.95649 1.23015 0.91118 0.85622 1.02421 1.22198 0.90495 0.92164 0.87554 1.86472 1.62335 1.32877 1.53430 1.24017 0.93907 0.94992 0.99287 1.68979 1.26362 1.11074 1.12345 1.21954 0.95796 0.95130 0.91771 1.18861 0.94778 0.97498 0.86378 1.20467 0.94462 0.97302 1.39166 0.94262 1.25531 1.01315 0.95161 0.95555 1.70109 1.28340 1.05933 1.50620 0.85754 0.80825 0.78854 0.77673 1.19829 1.21097 1.20554 1.22993 0.97357 0.94929 1.07198 1.22439 0.99442 0.95911 1.02363 1.24392 0.92945 0.99301 0.97255 0.92886 0.88349 0.93126 0.90753 0.90854 0.75801 0.88473 0.90168 0.95208 0.93574 0.93503 0.89241 0.91027 0.92497 0.90628 0.91539 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.67 10.00 -139.68 -1.40 -10.06 16 3 C 0.06 1.16 5.62 71.98 0.40 1.57 16 4 C 0.12 3.44 1.78 -10.45 -0.02 3.42 16 5 O -0.54 -17.37 13.55 -139.68 -1.89 -19.27 16 6 C 0.01 0.22 7.14 83.58 0.60 0.82 16 7 N -0.47 -19.56 6.07 -928.21 -5.64 -25.20 16 8 C 0.08 3.70 4.65 86.30 0.40 4.10 16 9 C 0.03 1.27 1.42 -52.93 -0.08 1.20 16 10 C -0.48 -27.27 8.53 25.60 0.22 -27.05 16 11 H 0.04 2.34 7.83 -2.92 -0.02 2.32 16 12 C 0.02 1.33 5.37 84.65 0.45 1.79 16 13 N -0.91 -53.75 12.93 21.45 0.28 -53.47 16 14 Si 0.94 46.14 29.54 68.60 2.03 48.16 16 15 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 18 C -0.19 -8.09 9.61 30.62 0.29 -7.80 16 19 C -0.16 -7.75 9.45 30.62 0.29 -7.47 16 20 C -0.01 -0.33 6.59 83.57 0.55 0.22 16 21 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 1.35 8.01 -2.39 -0.02 1.33 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.39 9.79 8.38 -74.05 -0.62 9.17 16 27 H 0.10 2.61 7.81 -2.38 -0.02 2.59 16 28 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.03 1.17 7.51 -2.39 -0.02 1.16 16 30 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.08 2.44 7.49 -2.38 -0.02 2.42 16 Total: -1.00 -67.47 309.49 -1.84 -69.31 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.42 Total: 18.11 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.37 Total: -27.58 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -5.36 Total: -78.67 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -3.29 Total: -29.33 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -67.47 -1.84 -69.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384028328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.644 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds