Wall clock time and date at job start Mon Mar 30 2020 03:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 108.91614 * 2 1 4 4 C 1.54253 * 108.99650 * 241.18904 * 2 1 3 5 5 N 1.44257 * 108.78794 * 160.70092 * 4 2 1 6 6 C 1.48356 * 114.18238 * 93.19871 * 5 4 2 7 7 C 1.53935 * 112.88523 * 318.39231 * 6 5 4 8 8 N 1.44265 * 112.54608 * 318.28690 * 7 6 5 9 9 C 1.46896 * 110.99899 * 217.13641 * 8 7 6 10 10 C 1.50696 * 109.47501 * 301.38084 * 9 8 7 11 11 O 1.21293 * 119.99988 * 4.77659 * 10 9 8 12 12 N 1.34775 * 120.00501 * 184.78177 * 10 9 8 13 13 C 1.37093 * 120.00355 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00289 * 0.02562 * 13 12 10 15 15 C 1.38953 * 119.99991 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99855 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00010 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47128 * 90.00026 * 17 15 13 19 19 H 1.48504 * 109.47005 * 209.99549 * 17 15 13 20 20 H 1.48492 * 109.47065 * 329.99693 * 17 15 13 21 21 C 1.46144 * 108.99312 * 118.80114 * 2 1 3 22 22 H 1.09000 * 109.46679 * 178.81043 * 1 2 3 23 23 H 1.09003 * 109.47203 * 298.80933 * 1 2 3 24 24 H 1.08992 * 109.47211 * 58.81284 * 1 2 3 25 25 H 1.09009 * 109.60751 * 280.52646 * 4 2 1 26 26 H 1.08995 * 109.61187 * 40.86551 * 4 2 1 27 27 H 1.00903 * 110.99759 * 219.93332 * 5 4 2 28 28 H 1.08990 * 108.84002 * 197.45868 * 6 5 4 29 29 H 1.09003 * 108.60910 * 79.15854 * 6 5 4 30 30 H 1.09006 * 108.86565 * 197.49663 * 7 6 5 31 31 H 1.08994 * 108.86992 * 79.07730 * 7 6 5 32 32 H 1.09007 * 109.46969 * 61.38085 * 9 8 7 33 33 H 1.09007 * 109.47327 * 181.37461 * 9 8 7 34 34 H 0.97003 * 119.99530 * 359.97438 * 12 10 9 35 35 H 0.97001 * 120.00006 * 179.97438 * 16 15 13 36 36 H 1.08998 * 108.93771 * 302.18712 * 21 2 1 37 37 H 1.09005 * 108.93401 * 60.78869 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8834 1.0311 0.0000 4 6 2.0321 -0.7029 -1.2780 5 7 3.4021 -0.3169 -1.5128 6 6 4.4031 -1.2449 -0.9316 7 6 4.0213 -1.7309 0.4782 8 7 3.4839 -0.6745 1.3007 9 6 3.9258 -0.8160 2.6945 10 6 3.4836 -2.1540 3.2284 11 8 2.9380 -2.9500 2.4935 12 7 3.6942 -2.4664 4.5224 13 6 3.2914 -3.6834 5.0082 14 1 2.8057 -4.3922 4.3539 15 6 3.5091 -4.0056 6.3422 16 7 3.1235 -5.1724 6.8078 17 14 4.3499 -2.7800 7.4739 18 1 3.3273 -1.9101 8.1086 19 1 5.0995 -3.5117 8.5265 20 1 5.2911 -1.9441 6.6863 21 6 2.0056 -0.6657 1.2109 22 1 -0.3633 -1.0275 -0.0213 23 1 -0.3634 0.4952 0.9005 24 1 -0.3633 0.5321 -0.8791 25 1 1.9738 -1.7836 -1.1480 26 1 1.4170 -0.4028 -2.1263 27 1 3.5715 -0.1649 -2.4958 28 1 5.3658 -0.7366 -0.8796 29 1 4.4977 -2.1100 -1.5880 30 1 4.9086 -2.1383 0.9629 31 1 3.2765 -2.5215 0.3889 32 1 5.0128 -0.7480 2.7397 33 1 3.4867 -0.0210 3.2974 34 1 4.1308 -1.8299 5.1100 35 1 3.2757 -5.3974 7.7389 36 1 1.6015 -0.1484 2.0810 37 1 1.6450 -1.6944 1.2139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385236067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:24 Heat of formation + Delta-G solvation = -21.009275 kcal Electronic energy + Delta-G solvation = -18215.089450 eV Core-core repulsion = 15413.531250 eV Total energy + Delta-G solvation = -2801.558200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67846 -37.81186 -34.82909 -33.89312 -33.67444 -31.73167 -28.87558 -27.32394 -25.37590 -24.84231 -23.13486 -20.25425 -19.76006 -19.36514 -18.20759 -16.41068 -16.06367 -15.73642 -15.14815 -14.59781 -14.31642 -14.06263 -13.58534 -13.41428 -13.17374 -12.94310 -12.52567 -12.32087 -12.08657 -11.79347 -11.48069 -11.23654 -11.01630 -10.68520 -10.64251 -10.60722 -10.42319 -10.16245 -10.03180 -9.57177 -9.17329 -8.21709 -8.11472 -7.53990 -6.35649 -3.86778 3.00829 3.05064 3.13199 3.68242 4.06972 4.12701 4.45041 4.68047 5.11728 5.14038 5.17789 5.37863 5.41831 5.45718 5.64495 5.72380 5.78986 5.80770 5.86295 5.94053 6.00136 6.09101 6.11762 6.23958 6.30368 6.43888 6.57786 6.72257 7.25818 7.42741 7.52171 7.55442 7.63556 8.10456 8.54385 8.90342 9.38458 9.77382 10.77345 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.005821 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.366039 B = 4809.086513 C = 4979.548047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.079 0.921 4 C 0.077 3.923 5 N -0.694 5.694 6 C 0.075 3.925 7 C 0.057 3.943 8 N -0.495 5.495 9 C 0.039 3.961 10 C 0.415 3.585 11 O -0.579 6.579 12 N -0.586 5.586 13 C -0.307 4.307 14 H 0.118 0.882 15 C 0.042 3.958 16 N -0.880 5.880 17 Si 0.880 3.120 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.268 1.268 21 C 0.056 3.944 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.336 0.664 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.371 0.629 35 H 0.274 0.726 36 H 0.059 0.941 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 11.417 -11.559 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.053 4.053 5 N -0.326 5.326 6 C -0.055 4.055 7 C -0.073 4.073 8 N -0.217 5.217 9 C -0.093 4.093 10 C 0.201 3.799 11 O -0.463 6.463 12 N -0.224 5.224 13 C -0.436 4.436 14 H 0.136 0.864 15 C -0.161 4.161 16 N -0.520 5.520 17 Si 0.706 3.294 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.194 1.194 21 C -0.072 4.072 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.204 0.796 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.466 11.542 -11.501 16.301 hybrid contribution 0.351 -0.748 0.916 1.234 sum 0.817 10.794 -10.585 15.140 Atomic orbital electron populations 1.21836 0.95491 1.01704 1.01425 1.20142 0.94012 1.01321 0.94734 0.90231 1.21595 0.88760 0.97759 0.97223 1.58596 1.02752 1.51973 1.19250 1.22371 0.95052 0.93123 0.94911 1.21873 1.00593 0.92746 0.92065 1.61869 1.09028 1.45044 1.05740 1.22289 1.01445 0.95430 0.90138 1.21115 0.85494 0.90348 0.82990 1.90517 1.47092 1.51902 1.56819 1.42382 1.53770 1.16882 1.09371 1.19443 1.36435 0.92397 0.95329 0.86447 1.25071 0.97648 0.96527 0.96889 1.69627 1.46007 1.20501 1.15843 0.86661 0.80035 0.81280 0.81399 1.19556 1.20136 1.19372 1.21146 0.87566 1.01080 0.97365 0.92860 0.92653 0.92851 0.94603 0.92250 0.84610 0.91405 0.95673 0.91645 0.92121 0.89173 0.89375 0.79602 0.91573 0.92275 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.00 37.16 0.33 -1.38 16 2 C -0.08 -1.12 2.60 -93.22 -0.24 -1.36 16 3 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 4 C 0.08 0.98 5.51 -4.58 -0.03 0.96 16 5 N -0.69 -8.75 6.34 -113.33 -0.72 -9.46 16 6 C 0.07 1.01 6.79 -2.53 -0.02 0.99 16 7 C 0.06 0.95 3.78 -4.75 -0.02 0.94 16 8 N -0.50 -8.29 4.62 -240.67 -1.11 -9.41 16 9 C 0.04 0.67 5.56 -4.98 -0.03 0.64 16 10 C 0.41 9.25 7.07 -10.99 -0.08 9.18 16 11 O -0.58 -14.83 11.91 5.55 0.07 -14.76 16 12 N -0.59 -13.89 5.09 -10.97 -0.06 -13.94 16 13 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 14 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 15 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 17 Si 0.88 19.37 27.74 -169.99 -4.71 14.66 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 21 C 0.06 0.92 3.48 -6.42 -0.02 0.90 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 25 H 0.04 0.52 6.97 -51.92 -0.36 0.16 16 26 H 0.06 0.64 7.99 -51.93 -0.42 0.22 16 27 H 0.34 3.42 8.90 -39.29 -0.35 3.07 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 1.14 7.40 -51.93 -0.38 0.76 16 31 H 0.06 1.19 5.36 -51.93 -0.28 0.91 16 32 H 0.09 1.38 8.07 -51.92 -0.42 0.96 16 33 H 0.09 1.35 7.96 -51.93 -0.41 0.93 16 34 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 36 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 37 H 0.06 1.15 5.95 -51.93 -0.31 0.84 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -31.11 286.43 -7.44 -38.55 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.66 Total: 11.86 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.34 Total: 3.11 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -1.11 Total: -57.74 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.07 Total: -14.76 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.11 -7.44 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385236067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.544 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds