Wall clock time and date at job start Mon Mar 30 2020 04:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99571 * 2 1 4 4 H 1.48500 * 109.46923 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47118 * 300.00189 * 3 2 1 6 6 H 1.48503 * 109.46841 * 60.00230 * 3 2 1 7 7 C 1.37874 * 120.00735 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00458 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99411 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46789 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46968 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46979 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47303 * 180.02562 * 12 11 10 14 14 C 1.46899 * 111.00116 * 180.02562 * 13 12 11 15 15 H 1.08992 * 109.47259 * 325.00252 * 14 13 12 16 16 C 1.53002 * 109.47000 * 85.00180 * 14 13 12 17 17 C 1.52997 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 14 19 19 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 20 20 C 1.52996 * 109.46973 * 204.99731 * 14 13 12 21 21 H 1.09004 * 109.47368 * 60.00191 * 20 14 13 22 22 O 1.42900 * 109.47636 * 300.00321 * 20 14 13 23 23 H 0.96993 * 120.00531 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47505 * 60.00679 * 9 7 2 25 25 H 1.08995 * 109.47285 * 299.99917 * 9 7 2 26 26 H 1.09003 * 109.47186 * 60.00035 * 10 9 7 27 27 H 1.09005 * 109.46902 * 299.99842 * 10 9 7 28 28 H 1.08996 * 109.46893 * 59.99804 * 11 10 9 29 29 H 1.08993 * 109.46943 * 300.00008 * 11 10 9 30 30 H 1.09003 * 109.46991 * 59.99959 * 12 11 10 31 31 H 1.09003 * 109.47574 * 299.99950 * 12 11 10 32 32 H 1.00902 * 111.00123 * 56.04297 * 13 12 11 33 33 H 1.09002 * 109.47097 * 299.99813 * 16 14 13 34 34 H 1.09001 * 109.47142 * 59.99778 * 16 14 13 35 35 H 1.09001 * 109.47375 * 59.99908 * 17 16 14 36 36 H 1.09000 * 109.47140 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.46505 * 299.99708 * 18 17 16 38 38 H 1.08996 * 109.46884 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.47153 * 180.02562 * 19 18 17 40 40 H 1.09001 * 109.46832 * 60.00321 * 19 18 17 41 41 H 0.96698 * 114.00516 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 7 1.7406 -7.4222 -0.0031 14 6 2.6651 -8.5637 -0.0031 15 1 3.5483 -8.3159 -0.5917 16 6 3.0828 -8.8817 1.4340 17 6 4.0463 -10.0702 1.4339 18 6 3.3523 -11.2893 0.8229 19 6 2.9346 -10.9713 -0.6142 20 6 1.9706 -9.7825 -0.6138 21 1 1.6730 -9.5560 -1.6377 22 8 0.8126 -10.1074 0.1579 23 1 -0.4850 0.8399 0.0004 24 1 0.6242 -2.5568 -0.8903 25 1 0.6249 -2.5571 0.8896 26 1 2.8722 -3.6042 0.8895 27 1 2.8722 -3.6042 -0.8906 28 1 0.8543 -5.0445 -0.8914 29 1 0.8537 -5.0451 0.8885 30 1 3.1016 -6.0925 0.8882 31 1 3.1016 -6.0917 -0.8918 32 1 1.1043 -7.4717 -0.7846 33 1 3.5776 -8.0134 1.8692 34 1 2.1995 -9.1295 2.0227 35 1 4.9295 -9.8220 0.8454 36 1 4.3442 -10.2965 2.4577 37 1 2.4692 -11.5375 1.4116 38 1 4.0385 -12.1361 0.8233 39 1 2.4398 -11.8396 -1.0494 40 1 3.8178 -10.7230 -1.2028 41 1 0.3218 -10.8724 -0.1722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385849716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:40 Heat of formation + Delta-G solvation = -112.640048 kcal Electronic energy + Delta-G solvation = -17329.392199 eV Core-core repulsion = 14627.400934 eV Total energy + Delta-G solvation = -2701.991265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38020 -37.49037 -36.03631 -35.48826 -33.92668 -31.08156 -30.71115 -28.55547 -26.01740 -23.78791 -23.04593 -22.27249 -21.75182 -20.58826 -18.44908 -17.71514 -17.11929 -16.60591 -16.48647 -16.04166 -15.61514 -15.17622 -14.85208 -14.58986 -14.16247 -13.80799 -13.74107 -13.59612 -13.11781 -12.88385 -12.85338 -12.70696 -12.36215 -12.23628 -12.13728 -11.99244 -11.83494 -11.44980 -11.37429 -11.30884 -11.09318 -10.84478 -10.60166 -10.56657 -9.30527 -8.20321 -6.32146 1.39128 1.39976 1.53532 2.40602 3.07829 3.12214 3.42025 3.77424 3.91256 4.05727 4.11700 4.18342 4.26946 4.34580 4.45579 4.51997 4.55610 4.60116 4.63920 4.78445 4.87133 4.90162 4.95255 5.05248 5.20005 5.21979 5.27421 5.28832 5.29706 5.35413 5.38266 5.54282 5.58027 5.76865 5.86113 6.15808 6.25191 6.49856 6.85539 7.01136 7.37279 8.91902 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057540 B = 0.003302 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.504011 B = 8476.431277 C = 8729.640701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.104 4.104 12 C 0.072 3.928 13 N -0.689 5.689 14 C 0.092 3.908 15 H 0.055 0.945 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.145 4.145 20 C 0.106 3.894 21 H 0.058 0.942 22 O -0.567 6.567 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.012 1.012 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.342 0.658 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 -24.808 -1.832 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.142 4.142 12 C -0.057 4.057 13 N -0.320 5.320 14 C -0.018 4.018 15 H 0.073 0.927 16 C -0.140 4.140 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.183 4.183 20 C 0.047 3.953 21 H 0.076 0.924 22 O -0.374 6.374 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.006 0.994 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.161 0.839 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.420 -24.198 -0.808 25.323 hybrid contribution 0.077 0.784 -1.135 1.382 sum 7.497 -23.414 -1.944 24.662 Atomic orbital electron populations 1.70112 1.07891 1.27742 1.51793 1.26046 0.95821 1.03561 0.94710 0.85356 0.79054 0.78525 0.77847 1.18493 1.20208 1.20316 1.21774 0.93580 0.92495 1.50401 0.92159 1.19026 0.94505 0.93338 0.94579 1.21402 0.97978 0.93646 1.00436 1.21449 0.98026 0.93437 1.01311 1.21899 0.95225 0.88390 1.00232 1.60352 1.20020 1.01072 1.50605 1.21645 0.93573 0.89341 0.97235 0.92681 1.21407 0.98990 0.97689 0.95954 1.21542 0.97865 0.94779 1.01359 1.21428 1.00454 0.97433 0.95709 1.22220 1.00036 0.98161 0.97925 1.21912 0.86189 0.93882 0.93322 0.92431 1.86626 1.40511 1.53584 1.56662 0.92748 0.99163 0.99397 0.93202 0.92973 0.92830 0.93027 0.91563 0.94852 0.83893 0.93551 0.92499 0.91717 0.91535 0.92069 0.90830 0.89761 0.90558 0.76478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.71 13.29 21.45 0.28 -58.42 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -32.24 9.11 25.60 0.23 -32.00 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.16 5.15 30.60 0.16 -4.00 16 11 C -0.10 -3.78 5.47 30.59 0.17 -3.61 16 12 C 0.07 2.10 5.48 86.30 0.47 2.57 16 13 N -0.69 -18.36 6.17 -491.58 -3.04 -21.39 16 14 C 0.09 1.98 2.28 44.92 0.10 2.08 16 15 H 0.06 1.14 7.80 -2.39 -0.02 1.12 16 16 C -0.10 -2.28 5.28 30.59 0.16 -2.12 16 17 C -0.12 -1.94 5.92 30.60 0.18 -1.75 16 18 C -0.11 -1.53 5.78 30.60 0.18 -1.35 16 19 C -0.15 -1.75 5.64 30.61 0.17 -1.58 16 20 C 0.11 1.77 3.09 30.61 0.09 1.87 16 21 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 22 O -0.57 -10.56 11.84 -148.98 -1.76 -12.33 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 1.98 7.44 -2.39 -0.02 1.96 16 31 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 32 H 0.34 8.70 8.35 -89.69 -0.75 7.95 16 33 H 0.05 1.13 7.45 -2.39 -0.02 1.11 16 34 H 0.06 1.50 7.68 -2.39 -0.02 1.49 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 0.95 7.68 -2.39 -0.02 0.93 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.39 3.86 9.08 -74.06 -0.67 3.18 16 Total: -1.00 -68.77 323.07 -0.39 -69.17 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.44 Total: 13.89 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 2.53 Total: -38.27 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.75 Total: -79.82 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.76 Total: -12.33 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.77 -0.39 -69.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385849716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.473 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds