Wall clock time and date at job start Mon Mar 30 2020 04:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47123 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00157 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47160 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.43531 * 305.69399 * 15 14 13 17 17 C 1.54889 * 110.48997 * 68.24121 * 15 14 13 18 18 C 1.55022 * 102.68486 * 156.51708 * 17 15 14 19 19 C 1.54268 * 104.28135 * 322.23410 * 18 17 15 20 20 C 1.53877 * 106.59894 * 23.51626 * 19 18 17 21 21 H 1.08993 * 110.02869 * 240.71750 * 20 19 18 22 22 O 1.42896 * 110.03046 * 119.28698 * 20 19 18 23 23 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 25 25 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 26 26 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 27 27 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 28 28 H 1.09002 * 109.46838 * 299.99316 * 11 10 9 29 29 H 1.09001 * 109.47142 * 59.99766 * 11 10 9 30 30 H 1.09002 * 109.47045 * 299.99833 * 12 11 10 31 31 H 1.09001 * 109.47375 * 59.99908 * 12 11 10 32 32 H 1.00898 * 111.00042 * 56.04389 * 13 12 11 33 33 H 1.09005 * 109.46967 * 299.99915 * 14 13 12 34 34 H 1.09002 * 109.47090 * 59.99341 * 14 13 12 35 35 H 1.08999 * 110.75200 * 274.93775 * 17 15 14 36 36 H 1.08996 * 110.75613 * 38.30324 * 17 15 14 37 37 H 1.08998 * 110.52744 * 203.48630 * 18 17 15 38 38 H 1.08998 * 110.36780 * 80.90110 * 18 17 15 39 39 H 1.09006 * 110.02880 * 264.23408 * 19 18 17 40 40 H 1.08997 * 110.07342 * 142.82584 * 19 18 17 41 41 H 0.96704 * 114.00035 * 62.83598 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0031 13 7 1.7401 -7.4221 0.0031 14 6 2.6646 -8.5638 0.0056 15 6 1.8646 -9.8679 0.0061 16 1 1.1566 -9.8797 0.8349 17 6 1.1242 -10.0504 -1.3421 18 6 0.9123 -11.5846 -1.4091 19 6 2.2066 -12.1740 -0.8115 20 6 2.8121 -11.0825 0.0884 21 1 3.8031 -10.8081 -0.2730 22 8 2.8939 -11.5492 1.4365 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8896 26 1 2.8727 -3.6047 -0.8877 27 1 2.8713 -3.6038 0.8923 28 1 0.8528 -5.0447 0.8906 29 1 0.8546 -5.0450 -0.8895 30 1 3.1026 -6.0925 -0.8860 31 1 3.0999 -6.0919 0.8940 32 1 1.1046 -7.4728 -0.7789 33 1 3.2940 -8.5236 -0.8835 34 1 3.2913 -8.5219 0.8964 35 1 0.1685 -9.5263 -1.3319 36 1 1.7436 -9.7104 -2.1720 37 1 0.7872 -11.9083 -2.4424 38 1 0.0490 -11.8748 -0.8103 39 1 2.9038 -12.4293 -1.6096 40 1 1.9759 -13.0600 -0.2200 41 1 3.4755 -12.3128 1.5537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385851940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:11 Heat of formation + Delta-G solvation = -96.422999 kcal Electronic energy + Delta-G solvation = -16890.150133 eV Core-core repulsion = 14188.862092 eV Total energy + Delta-G solvation = -2701.288041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.41560 -36.73157 -35.34136 -34.22332 -32.33470 -30.06517 -27.98284 -27.46218 -24.41286 -23.12363 -21.60769 -20.98531 -20.38382 -19.95376 -17.47443 -16.65747 -16.15635 -15.73287 -15.59087 -14.52135 -14.44515 -13.68851 -13.63695 -13.41932 -13.18796 -12.89149 -12.68960 -12.51166 -12.02963 -11.71447 -11.48865 -11.02251 -10.98468 -10.91784 -10.84153 -10.74249 -10.55443 -10.50127 -10.23560 -10.08359 -9.72719 -9.56892 -8.45693 -8.39654 -8.26790 -6.30544 -3.98836 3.46646 3.49118 3.67808 3.80561 4.08180 4.24728 4.44498 4.59464 4.61120 4.95201 5.01757 5.06954 5.19653 5.27811 5.33376 5.38906 5.46823 5.48434 5.52687 5.55088 5.72965 5.73657 5.85827 5.86886 5.90804 6.08197 6.13415 6.22061 6.44172 6.73946 6.86463 6.97816 7.15422 7.36358 7.41185 7.49837 7.63395 8.29682 8.52887 8.95152 9.73634 11.10262 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063207 B = 0.002902 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.883772 B = 9645.865718 C = 9863.116305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.117 4.117 12 C 0.060 3.940 13 N -0.690 5.690 14 C 0.067 3.933 15 C -0.083 4.083 16 H 0.095 0.905 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.158 4.158 20 C 0.103 3.897 21 H 0.057 0.943 22 O -0.563 6.563 23 H 0.269 0.731 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.338 0.662 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -25.341 -2.644 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.029 4.029 10 C -0.140 4.140 11 C -0.155 4.155 12 C -0.069 4.069 13 N -0.321 5.321 14 C -0.062 4.062 15 C -0.102 4.102 16 H 0.114 0.886 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.195 4.195 20 C 0.044 3.956 21 H 0.075 0.925 22 O -0.369 6.369 23 H 0.079 0.921 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.661 -23.198 -1.863 23.735 hybrid contribution 1.016 -2.192 -1.078 2.645 sum 5.677 -25.390 -2.940 26.182 Atomic orbital electron populations 1.70774 1.06881 1.30596 1.46898 1.25865 0.96597 1.02745 0.93902 0.83551 0.74878 0.75385 0.76461 1.21514 1.21463 1.20775 1.22098 0.94256 0.92228 1.55437 0.93445 1.19219 0.94675 0.93167 0.95853 1.21460 0.98806 0.93443 1.00308 1.21653 0.97956 0.93945 1.01899 1.22055 0.96154 0.88521 1.00159 1.60476 1.20031 1.01657 1.49920 1.21970 0.94202 0.89645 1.00415 1.21985 0.97224 0.92087 0.98909 0.88642 1.22608 1.00860 0.96094 0.96549 1.22297 0.97422 0.95433 1.00710 1.22901 0.98094 0.98886 0.99668 1.22503 0.98017 0.93337 0.81779 0.92465 1.86587 1.70881 1.51887 1.27522 0.92102 0.97501 0.97659 0.93534 0.93248 0.91664 0.92831 0.95611 0.91226 0.84384 0.95525 0.90879 0.90536 0.91451 0.91581 0.91321 0.91482 0.90930 0.77850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.96 13.65 55.43 0.76 -28.20 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 26.00 29.90 -169.99 -5.08 20.91 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.60 -17.87 9.11 -34.44 -0.31 -18.18 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 10 C -0.10 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.12 -2.07 5.47 -26.73 -0.15 -2.21 16 12 C 0.06 0.89 5.68 -3.83 -0.02 0.87 16 13 N -0.69 -9.06 6.50 -113.78 -0.74 -9.80 16 14 C 0.07 0.76 5.03 -3.82 -0.02 0.74 16 15 C -0.08 -0.83 2.83 -88.96 -0.25 -1.08 16 16 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 17 C -0.12 -1.04 5.63 -24.67 -0.14 -1.17 16 18 C -0.12 -0.89 6.83 -25.00 -0.17 -1.06 16 19 C -0.16 -1.09 6.61 -25.61 -0.17 -1.26 16 20 C 0.10 0.87 3.83 -25.61 -0.10 0.78 16 21 H 0.06 0.45 7.84 -51.93 -0.41 0.05 16 22 O -0.56 -5.20 13.22 -35.23 -0.47 -5.66 16 23 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 24 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 25 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.34 4.10 7.92 -39.29 -0.31 3.79 16 33 H 0.03 0.28 8.06 -51.93 -0.42 -0.14 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.65 8.02 -51.93 -0.42 0.23 16 36 H 0.07 0.55 8.00 -51.93 -0.42 0.13 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 41 H 0.37 1.78 9.11 45.56 0.42 2.19 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -32.85 327.90 -9.22 -42.07 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.94 Total: 0.30 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -1.68 Total: -24.56 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.02 Total: -38.00 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.47 Total: -5.66 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.85 -9.22 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385851940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.355 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds