Wall clock time and date at job start Mon Mar 30 2020 04:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47123 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00157 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47160 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.43531 * 305.69399 * 15 14 13 17 17 C 1.54889 * 110.48997 * 68.24121 * 15 14 13 18 18 C 1.55022 * 102.68486 * 156.51708 * 17 15 14 19 19 C 1.54268 * 104.28135 * 322.23410 * 18 17 15 20 20 C 1.53877 * 106.59894 * 23.51626 * 19 18 17 21 21 H 1.08993 * 110.02869 * 240.71750 * 20 19 18 22 22 O 1.42896 * 110.03046 * 119.28698 * 20 19 18 23 23 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 25 25 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 26 26 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 27 27 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 28 28 H 1.09002 * 109.46838 * 299.99316 * 11 10 9 29 29 H 1.09001 * 109.47142 * 59.99766 * 11 10 9 30 30 H 1.09002 * 109.47045 * 299.99833 * 12 11 10 31 31 H 1.09001 * 109.47375 * 59.99908 * 12 11 10 32 32 H 1.00898 * 111.00042 * 56.04389 * 13 12 11 33 33 H 1.09005 * 109.46967 * 299.99915 * 14 13 12 34 34 H 1.09002 * 109.47090 * 59.99341 * 14 13 12 35 35 H 1.08999 * 110.75200 * 274.93775 * 17 15 14 36 36 H 1.08996 * 110.75613 * 38.30324 * 17 15 14 37 37 H 1.08998 * 110.52744 * 203.48630 * 18 17 15 38 38 H 1.08998 * 110.36780 * 80.90110 * 18 17 15 39 39 H 1.09006 * 110.02880 * 264.23408 * 19 18 17 40 40 H 1.08997 * 110.07342 * 142.82584 * 19 18 17 41 41 H 0.96704 * 114.00035 * 62.83598 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0031 13 7 1.7401 -7.4221 0.0031 14 6 2.6646 -8.5638 0.0056 15 6 1.8646 -9.8679 0.0061 16 1 1.1566 -9.8797 0.8349 17 6 1.1242 -10.0504 -1.3421 18 6 0.9123 -11.5846 -1.4091 19 6 2.2066 -12.1740 -0.8115 20 6 2.8121 -11.0825 0.0884 21 1 3.8031 -10.8081 -0.2730 22 8 2.8939 -11.5492 1.4365 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8896 26 1 2.8727 -3.6047 -0.8877 27 1 2.8713 -3.6038 0.8923 28 1 0.8528 -5.0447 0.8906 29 1 0.8546 -5.0450 -0.8895 30 1 3.1026 -6.0925 -0.8860 31 1 3.0999 -6.0919 0.8940 32 1 1.1046 -7.4728 -0.7789 33 1 3.2940 -8.5236 -0.8835 34 1 3.2913 -8.5219 0.8964 35 1 0.1685 -9.5263 -1.3319 36 1 1.7436 -9.7104 -2.1720 37 1 0.7872 -11.9083 -2.4424 38 1 0.0490 -11.8748 -0.8103 39 1 2.9038 -12.4293 -1.6096 40 1 1.9759 -13.0600 -0.2200 41 1 3.4755 -12.3128 1.5537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385851940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:10 Heat of formation + Delta-G solvation = -119.462295 kcal Electronic energy + Delta-G solvation = -16891.149192 eV Core-core repulsion = 14188.862092 eV Total energy + Delta-G solvation = -2702.287100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11282 -37.92134 -36.46823 -35.68629 -34.08134 -31.28878 -28.98855 -28.59910 -26.09629 -24.39082 -23.12239 -22.00155 -21.63291 -20.79875 -18.88630 -18.15215 -17.19944 -16.47939 -16.44589 -15.84456 -15.69127 -15.59754 -14.86839 -14.60123 -14.36024 -14.14379 -13.80433 -13.57915 -13.31542 -12.98314 -12.67473 -12.50347 -12.32451 -12.14669 -12.06105 -11.95218 -11.66490 -11.61320 -11.51286 -11.44283 -11.30486 -10.85679 -10.62720 -10.55496 -9.43603 -8.70793 -6.41172 1.51477 1.60676 1.80197 2.56505 3.00193 3.14334 3.38634 3.60522 3.67134 3.97436 3.99592 4.09219 4.28687 4.34579 4.41696 4.42935 4.48616 4.52144 4.59908 4.68549 4.73059 4.78579 4.82886 4.95667 5.00560 5.05107 5.08725 5.14660 5.18364 5.20198 5.29866 5.42116 5.46326 5.55316 5.99453 6.02017 6.17577 6.41227 6.56479 6.91992 7.41789 8.70075 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063207 B = 0.002902 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.883772 B = 9645.865718 C = 9863.116305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.120 2.880 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.282 1.282 7 C -0.623 4.623 8 H 0.051 0.949 9 C 0.007 3.993 10 C -0.091 4.091 11 C -0.106 4.106 12 C 0.071 3.929 13 N -0.698 5.698 14 C 0.071 3.929 15 C -0.084 4.084 16 H 0.070 0.930 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.152 4.152 20 C 0.102 3.898 21 H 0.066 0.934 22 O -0.586 6.586 23 H 0.255 0.745 24 H -0.015 1.015 25 H -0.012 1.012 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.345 0.655 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -26.228 -3.385 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.940 3.060 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.661 4.661 8 H 0.070 0.930 9 C -0.030 4.030 10 C -0.129 4.129 11 C -0.144 4.144 12 C -0.058 4.058 13 N -0.330 5.330 14 C -0.058 4.058 15 C -0.103 4.103 16 H 0.089 0.911 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.190 4.190 20 C 0.043 3.957 21 H 0.084 0.916 22 O -0.394 6.394 23 H 0.064 0.936 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.217 -24.137 -2.603 25.061 hybrid contribution 0.508 -1.964 -0.822 2.189 sum 6.725 -26.101 -3.426 27.170 Atomic orbital electron populations 1.70916 1.08000 1.29823 1.48889 1.27556 0.96648 1.07104 0.92655 0.82918 0.74117 0.70830 0.78124 1.19208 1.19324 1.20768 1.22565 0.94778 0.93635 1.55075 0.93047 1.19197 0.95206 0.94727 0.93911 1.21293 0.97759 0.93345 1.00524 1.21477 0.98096 0.93284 1.01529 1.21832 0.95248 0.88191 1.00541 1.60411 1.20533 1.01497 1.50532 1.21964 0.94029 0.89423 1.00402 1.21939 0.97115 0.92272 0.98931 0.91126 1.22593 1.00519 0.97017 0.95760 1.22313 0.97528 0.94554 1.01477 1.22867 0.97985 0.98375 0.99766 1.22518 0.98093 0.93184 0.81885 0.91624 1.86539 1.71722 1.53089 1.28065 0.93609 0.99636 0.99397 0.92995 0.93203 0.92735 0.92562 0.94655 0.91418 0.83671 0.94283 0.91951 0.91015 0.90737 0.90274 0.91906 0.89956 0.90462 0.75743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.35 13.65 21.45 0.29 -60.05 16 2 C -0.04 -2.57 5.46 84.66 0.46 -2.11 16 3 Si 1.12 51.45 29.90 68.60 2.05 53.50 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.62 -37.13 9.11 25.60 0.23 -36.89 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 9 C 0.01 0.36 4.28 29.85 0.13 0.49 16 10 C -0.09 -3.89 5.15 30.60 0.16 -3.74 16 11 C -0.11 -3.71 5.47 30.59 0.17 -3.54 16 12 C 0.07 2.02 5.68 86.30 0.49 2.51 16 13 N -0.70 -17.61 6.50 -513.89 -3.34 -20.95 16 14 C 0.07 1.51 5.03 86.30 0.43 1.94 16 15 C -0.08 -1.59 2.83 -9.72 -0.03 -1.61 16 16 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 17 C -0.12 -1.86 5.63 31.93 0.18 -1.68 16 18 C -0.12 -1.56 6.83 31.72 0.22 -1.34 16 19 C -0.15 -1.77 6.61 31.32 0.21 -1.56 16 20 C 0.10 1.57 3.83 31.32 0.12 1.69 16 21 H 0.07 0.89 7.84 -2.39 -0.02 0.88 16 22 O -0.59 -10.12 13.22 -148.98 -1.97 -12.09 16 23 H 0.25 16.59 7.22 -92.70 -0.67 15.92 16 24 H -0.01 -0.86 8.01 -2.39 -0.02 -0.87 16 25 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.34 7.96 7.92 -89.70 -0.71 7.25 16 33 H 0.04 0.75 8.06 -2.38 -0.02 0.73 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.15 8.02 -2.39 -0.02 1.14 16 36 H 0.07 1.05 8.00 -2.39 -0.02 1.03 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.08 0.84 7.95 -2.39 -0.02 0.82 16 41 H 0.39 3.14 9.11 -74.05 -0.67 2.46 16 Total: -1.00 -70.37 327.90 -0.50 -70.87 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.30 Total: 14.57 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 2.77 Total: -45.84 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.05 Total: -81.01 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.97 Total: -12.09 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -70.37 -0.50 -70.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385851940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.591 kcal (2) G-P(sol) polarization free energy of solvation -70.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds