Wall clock time and date at job start Mon Mar 30 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47408 * 179.97438 * 12 11 10 14 14 C 1.46890 * 111.00452 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47579 * 179.97438 * 14 13 12 16 16 H 1.08991 * 110.43859 * 307.54124 * 15 14 13 17 17 C 1.54893 * 110.48646 * 70.22786 * 15 14 13 18 18 C 1.54883 * 102.74992 * 156.62118 * 17 15 14 19 19 C 1.54266 * 104.19885 * 322.05674 * 18 17 15 20 20 C 1.53874 * 106.59586 * 23.60663 * 19 18 17 21 21 H 1.09004 * 110.02876 * 119.28449 * 20 19 18 22 22 O 1.42897 * 110.03809 * 240.71664 * 20 19 18 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 29 29 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 30 30 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 31 31 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 32 32 H 1.00906 * 110.99832 * 303.95491 * 13 12 11 33 33 H 1.09001 * 109.47212 * 300.00126 * 14 13 12 34 34 H 1.09007 * 109.47329 * 60.00038 * 14 13 12 35 35 H 1.09006 * 110.75377 * 274.94074 * 17 15 14 36 36 H 1.08999 * 110.75374 * 38.30205 * 17 15 14 37 37 H 1.09007 * 110.48427 * 203.37760 * 18 17 15 38 38 H 1.08999 * 110.48500 * 80.73573 * 18 17 15 39 39 H 1.09004 * 110.02955 * 264.33189 * 19 18 17 40 40 H 1.08995 * 110.07605 * 142.92141 * 19 18 17 41 41 H 0.96707 * 113.99696 * 297.17437 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 2.6643 -8.5639 -0.0031 15 6 1.8643 -9.8680 -0.0024 16 1 1.1357 -9.8671 0.8082 17 6 1.1609 -10.0732 -1.3670 18 6 0.9475 -11.6065 -1.4145 19 6 2.2262 -12.1864 -0.7755 20 6 2.8092 -11.0810 0.1222 21 1 2.8456 -11.4211 1.1572 22 8 4.1201 -10.7283 -0.3241 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8533 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 3.1010 -6.0919 -0.8918 31 1 3.1012 -6.0927 0.8881 32 1 1.1038 -7.4725 0.7798 33 1 3.2916 -8.5225 -0.8935 34 1 3.2931 -8.5233 0.8865 35 1 0.2054 -9.5491 -1.3918 36 1 1.8028 -9.7469 -2.1853 37 1 0.8484 -11.9461 -2.4455 38 1 0.0693 -11.8875 -0.8332 39 1 2.9433 -12.4538 -1.5518 40 1 1.9806 -13.0633 -0.1765 41 1 4.7613 -11.4502 -0.2703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385851947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:16 Heat of formation + Delta-G solvation = -90.185656 kcal Electronic energy + Delta-G solvation = -16940.469139 eV Core-core repulsion = 14239.451570 eV Total energy + Delta-G solvation = -2701.017569 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37119 -36.52407 -35.11815 -33.99428 -32.19498 -30.05681 -27.92539 -27.62505 -24.64144 -23.01687 -21.37921 -20.91004 -20.12115 -19.76449 -17.57407 -16.22209 -15.97991 -15.47606 -14.97899 -14.75078 -14.43686 -14.08861 -13.94114 -13.69879 -12.81428 -12.58914 -12.29279 -12.11800 -11.65029 -11.52732 -11.31759 -11.26194 -10.98620 -10.83340 -10.78281 -10.69863 -10.42890 -10.41283 -10.35518 -10.16918 -9.56050 -9.19436 -8.95514 -8.28503 -8.23202 -5.93497 -3.95539 3.37266 3.41118 3.44004 3.95827 4.10883 4.34570 4.49488 4.53588 4.73856 5.00990 5.07812 5.23967 5.35136 5.39502 5.41760 5.47468 5.52529 5.59639 5.64292 5.73628 5.79943 5.91684 6.00696 6.07446 6.11284 6.24064 6.28688 6.36673 6.59584 6.90578 7.04316 7.14938 7.31850 7.39106 7.56082 7.75949 7.92781 8.08129 8.51114 9.11896 9.67939 11.17897 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063058 B = 0.002961 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.932143 B = 9454.070886 C = 9735.416699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.693 5.693 14 C 0.078 3.922 15 C -0.083 4.083 16 H 0.081 0.919 17 C -0.106 4.106 18 C -0.127 4.127 19 C -0.157 4.157 20 C 0.103 3.897 21 H 0.054 0.946 22 O -0.560 6.560 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.335 0.665 33 H 0.078 0.922 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -25.549 0.094 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.323 5.323 14 C -0.051 4.051 15 C -0.102 4.102 16 H 0.099 0.901 17 C -0.143 4.143 18 C -0.164 4.164 19 C -0.195 4.195 20 C 0.043 3.957 21 H 0.072 0.928 22 O -0.365 6.365 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.152 0.848 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.701 -24.858 -0.693 25.142 hybrid contribution 1.027 0.338 1.084 1.531 sum 4.728 -24.520 0.391 24.975 Atomic orbital electron populations 1.69963 1.06043 1.26590 1.51037 1.25038 0.94849 0.99207 0.95458 0.86668 0.79582 0.83216 0.78580 1.21312 1.20298 1.20261 1.21271 0.92994 0.91265 1.50330 0.92829 1.19087 0.94029 0.91329 0.97118 1.21591 0.99076 0.94020 1.00051 1.21633 0.97886 0.93892 1.01881 1.22039 0.96131 0.88579 1.00034 1.60520 1.20183 1.01936 1.49681 1.21684 0.93692 0.88643 1.01094 1.22057 0.95978 0.93271 0.98917 0.90059 1.22439 1.00962 0.94367 0.96550 1.22355 0.96956 0.96530 1.00582 1.22923 0.98732 0.98229 0.99592 1.22476 0.83075 0.94322 0.95784 0.92815 1.86592 1.19953 1.41466 1.88481 0.93018 0.96773 0.96613 0.93464 0.93725 0.92849 0.91707 0.91375 0.95776 0.84771 0.90341 0.95673 0.90791 0.91123 0.91655 0.91696 0.90935 0.91675 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -15.30 9.11 -34.44 -0.31 -15.61 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.36 5.15 -26.73 -0.14 -2.49 16 11 C -0.11 -2.07 5.47 -26.73 -0.15 -2.22 16 12 C 0.06 0.94 5.69 -3.83 -0.02 0.91 16 13 N -0.69 -9.30 6.39 -113.79 -0.73 -10.03 16 14 C 0.08 0.94 4.27 -3.83 -0.02 0.93 16 15 C -0.08 -0.82 3.00 -88.96 -0.27 -1.09 16 16 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.11 -1.03 6.22 -24.74 -0.15 -1.19 16 18 C -0.13 -0.99 6.83 -25.08 -0.17 -1.16 16 19 C -0.16 -1.10 6.61 -25.61 -0.17 -1.27 16 20 C 0.10 0.85 4.12 -25.61 -0.11 0.75 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 O -0.56 -5.00 11.74 -35.23 -0.41 -5.41 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.01 0.40 8.14 -51.92 -0.42 -0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.34 4.17 8.73 -39.29 -0.34 3.82 16 33 H 0.08 1.07 7.58 -51.93 -0.39 0.67 16 34 H 0.03 0.32 8.14 -51.92 -0.42 -0.11 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.79 7.97 -51.93 -0.41 0.37 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.50 7.96 -51.93 -0.41 0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.37 1.76 9.11 45.56 0.42 2.17 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -31.83 328.71 -9.24 -41.07 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.03 Total: -0.31 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -1.74 Total: -20.46 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.01 Total: -37.02 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.41 Total: -5.41 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.83 -9.24 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385851947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.118 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds