Wall clock time and date at job start Mon Mar 30 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47408 * 179.97438 * 12 11 10 14 14 C 1.46890 * 111.00452 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47579 * 179.97438 * 14 13 12 16 16 H 1.08991 * 110.43859 * 307.54124 * 15 14 13 17 17 C 1.54893 * 110.48646 * 70.22786 * 15 14 13 18 18 C 1.54883 * 102.74992 * 156.62118 * 17 15 14 19 19 C 1.54266 * 104.19885 * 322.05674 * 18 17 15 20 20 C 1.53874 * 106.59586 * 23.60663 * 19 18 17 21 21 H 1.09004 * 110.02876 * 119.28449 * 20 19 18 22 22 O 1.42897 * 110.03809 * 240.71664 * 20 19 18 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 29 29 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 30 30 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 31 31 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 32 32 H 1.00906 * 110.99832 * 303.95491 * 13 12 11 33 33 H 1.09001 * 109.47212 * 300.00126 * 14 13 12 34 34 H 1.09007 * 109.47329 * 60.00038 * 14 13 12 35 35 H 1.09006 * 110.75377 * 274.94074 * 17 15 14 36 36 H 1.08999 * 110.75374 * 38.30205 * 17 15 14 37 37 H 1.09007 * 110.48427 * 203.37760 * 18 17 15 38 38 H 1.08999 * 110.48500 * 80.73573 * 18 17 15 39 39 H 1.09004 * 110.02955 * 264.33189 * 19 18 17 40 40 H 1.08995 * 110.07605 * 142.92141 * 19 18 17 41 41 H 0.96707 * 113.99696 * 297.17437 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 2.6643 -8.5639 -0.0031 15 6 1.8643 -9.8680 -0.0024 16 1 1.1357 -9.8671 0.8082 17 6 1.1609 -10.0732 -1.3670 18 6 0.9475 -11.6065 -1.4145 19 6 2.2262 -12.1864 -0.7755 20 6 2.8092 -11.0810 0.1222 21 1 2.8456 -11.4211 1.1572 22 8 4.1201 -10.7283 -0.3241 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8533 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 3.1010 -6.0919 -0.8918 31 1 3.1012 -6.0927 0.8881 32 1 1.1038 -7.4725 0.7798 33 1 3.2916 -8.5225 -0.8935 34 1 3.2931 -8.5233 0.8865 35 1 0.2054 -9.5491 -1.3918 36 1 1.8028 -9.7469 -2.1853 37 1 0.8484 -11.9461 -2.4455 38 1 0.0693 -11.8875 -0.8332 39 1 2.9433 -12.4538 -1.5518 40 1 1.9806 -13.0633 -0.1765 41 1 4.7613 -11.4502 -0.2703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385851947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:16 Heat of formation + Delta-G solvation = -112.139003 kcal Electronic energy + Delta-G solvation = -16941.421108 eV Core-core repulsion = 14239.451570 eV Total energy + Delta-G solvation = -2701.969538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07663 -37.76817 -36.11229 -35.51100 -34.04385 -31.33917 -29.17832 -28.56134 -26.32390 -24.25116 -22.87460 -21.80002 -21.53142 -20.69413 -18.45310 -18.20602 -17.08220 -16.55222 -16.41243 -15.81354 -15.62232 -15.37401 -14.92451 -14.67770 -14.35278 -14.03388 -13.60838 -13.39243 -13.15186 -12.87034 -12.82408 -12.39810 -12.25399 -12.12097 -12.06062 -11.95618 -11.71289 -11.51410 -11.37855 -11.31690 -11.29489 -10.93510 -10.77565 -10.55077 -9.33691 -8.19904 -6.31638 1.39167 1.42964 1.50925 2.40994 3.12497 3.14826 3.38410 3.69571 3.78929 3.97934 4.12356 4.20760 4.35753 4.45498 4.49824 4.54399 4.59006 4.65628 4.69437 4.82220 4.88267 4.89741 4.95980 5.00102 5.07611 5.19202 5.24574 5.26884 5.31135 5.35043 5.40695 5.51144 5.54566 5.77641 5.86479 6.10130 6.25850 6.49872 6.85584 6.97565 7.37527 8.91912 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063058 B = 0.002961 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.932143 B = 9454.070886 C = 9735.416699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.281 1.281 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.098 4.098 11 C -0.104 4.104 12 C 0.072 3.928 13 N -0.695 5.695 14 C 0.086 3.914 15 C -0.086 4.086 16 H 0.091 0.909 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.151 4.151 20 C 0.103 3.897 21 H 0.068 0.932 22 O -0.581 6.581 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.011 1.011 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.343 0.657 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.265 -26.505 0.557 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.057 4.057 13 N -0.327 5.327 14 C -0.043 4.043 15 C -0.104 4.104 16 H 0.109 0.891 17 C -0.145 4.145 18 C -0.162 4.162 19 C -0.189 4.189 20 C 0.044 3.956 21 H 0.086 0.914 22 O -0.389 6.389 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.007 0.993 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.161 0.839 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.759 -25.845 -0.228 26.281 hybrid contribution 0.674 0.620 0.929 1.304 sum 5.432 -25.226 0.701 25.813 Atomic orbital electron populations 1.70101 1.07862 1.27873 1.51640 1.26036 0.95825 1.03507 0.94674 0.85473 0.78269 0.77912 0.79230 1.20669 1.19069 1.19152 1.21727 0.93569 0.92581 1.50662 0.92239 1.19011 0.94468 0.93215 0.94633 1.21407 0.98023 0.93788 1.00363 1.21454 0.97968 0.93219 1.01535 1.21809 0.95280 0.88481 1.00131 1.60462 1.20437 1.01545 1.50222 1.21605 0.93527 0.89185 1.00022 1.22100 0.96422 0.92773 0.99147 0.89126 1.22390 1.00041 0.96026 0.96005 1.22353 0.97886 0.94777 1.01168 1.22888 0.98109 0.98309 0.99590 1.22493 0.82616 0.93649 0.96835 0.91442 1.86545 1.20675 1.43020 1.88653 0.92723 0.99129 0.99262 0.93256 0.93153 0.92638 0.92639 0.91723 0.95257 0.83926 0.92052 0.95949 0.91698 0.92977 0.91350 0.90753 0.90788 0.89879 0.75952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.62 13.29 21.45 0.28 -58.34 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.55 -32.48 9.11 25.60 0.23 -32.25 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -4.23 5.15 30.59 0.16 -4.07 16 11 C -0.10 -3.73 5.47 30.59 0.17 -3.56 16 12 C 0.07 2.16 5.69 86.30 0.49 2.65 16 13 N -0.70 -18.16 6.39 -513.93 -3.28 -21.45 16 14 C 0.09 2.00 4.27 86.30 0.37 2.37 16 15 C -0.09 -1.57 3.00 -9.72 -0.03 -1.60 16 16 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 17 C -0.11 -2.03 6.22 31.88 0.20 -1.83 16 18 C -0.12 -1.72 6.83 31.67 0.22 -1.51 16 19 C -0.15 -1.77 6.61 31.32 0.21 -1.56 16 20 C 0.10 1.50 4.12 31.32 0.13 1.63 16 21 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 22 O -0.58 -9.52 11.74 -148.98 -1.75 -11.27 16 23 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 24 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.34 8.15 8.73 -89.69 -0.78 7.37 16 33 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 34 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.05 1.16 7.97 -2.39 -0.02 1.15 16 37 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.86 7.96 -2.38 -0.02 0.84 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.39 3.00 9.11 -74.05 -0.67 2.32 16 Total: -1.00 -68.17 328.71 -0.45 -68.62 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.48 Total: 12.99 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 2.75 Total: -37.96 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.00 Total: -79.79 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.75 Total: -11.27 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -68.17 -0.45 -68.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385851947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.517 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds