Wall clock time and date at job start Mon Mar 30 2020 03:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46800 * 2 1 4 4 C 1.47439 * 111.00045 * 290.12836 * 3 2 1 5 5 C 1.54322 * 107.36952 * 236.65966 * 4 3 2 6 6 C 1.55398 * 102.90031 * 337.89642 * 5 4 3 7 7 H 1.08999 * 110.90155 * 277.38192 * 6 5 4 8 8 N 1.46900 * 111.02637 * 153.63057 * 6 5 4 9 9 C 1.46905 * 110.99526 * 92.60604 * 8 6 5 10 10 C 1.50695 * 109.47113 * 179.97438 * 9 8 6 11 11 O 1.21299 * 119.99931 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00513 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00371 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99747 * 0.02562 * 13 12 10 15 15 C 1.38943 * 119.99717 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00424 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99911 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47011 * 60.00019 * 17 15 13 19 19 H 1.48497 * 109.47526 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47195 * 300.00452 * 17 15 13 21 21 C 1.47843 * 110.99640 * 169.28128 * 3 2 1 22 22 H 1.08997 * 109.47444 * 299.99462 * 1 2 3 23 23 H 1.08999 * 109.47770 * 60.00095 * 1 2 3 24 24 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47094 * 240.00397 * 2 1 3 26 26 H 1.08996 * 109.46905 * 120.00167 * 2 1 3 27 27 H 1.09002 * 109.88998 * 356.14887 * 4 3 2 28 28 H 1.09003 * 109.88733 * 117.17548 * 4 3 2 29 29 H 1.09005 * 110.70342 * 96.18020 * 5 4 3 30 30 H 1.08997 * 110.70605 * 219.41644 * 5 4 3 31 31 H 1.00899 * 110.99831 * 216.55485 * 8 6 5 32 32 H 1.08998 * 109.46778 * 299.99867 * 9 8 6 33 33 H 1.09001 * 109.47116 * 59.99892 * 9 8 6 34 34 H 0.96999 * 119.99257 * 359.97438 * 12 10 9 35 35 H 0.97005 * 120.00256 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.37823 * 265.19398 * 21 3 2 37 37 H 1.09001 * 110.37314 * 27.42672 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7491 2.0411 -1.2924 5 6 3.0998 2.5403 -1.8473 6 6 3.9837 2.6378 -0.5729 7 1 3.8062 3.5761 -0.0474 8 7 5.4064 2.4847 -0.9052 9 6 6.0356 3.7912 -1.1402 10 6 7.4912 3.5944 -1.4770 11 8 7.9584 2.4757 -1.5177 12 7 8.2737 4.6612 -1.7340 13 6 9.5981 4.4822 -2.0399 14 1 10.0142 3.4862 -2.0753 15 6 10.4048 5.5821 -2.3043 16 7 9.8983 6.7939 -2.2617 17 14 12.2092 5.3381 -2.7217 18 1 12.3259 4.5051 -3.9456 19 1 12.8454 6.6588 -2.9588 20 1 12.8908 4.6564 -1.5922 21 6 3.4748 1.4325 0.2567 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.3049 1.3264 -1.9853 28 1 1.0739 2.8843 -1.1461 29 1 3.5172 1.8200 -2.5510 30 1 2.9863 3.5176 -2.3162 31 1 5.8931 1.9734 -0.1842 32 1 5.5350 4.2916 -1.9691 33 1 5.9503 4.4024 -0.2418 34 1 7.8998 5.5556 -1.7026 35 1 10.4616 7.5618 -2.4459 36 1 3.6681 1.5932 1.3173 37 1 3.9497 0.5108 -0.0794 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389350933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:42 Heat of formation + Delta-G solvation = -33.606468 kcal Electronic energy + Delta-G solvation = -17088.738435 eV Core-core repulsion = 14286.633980 eV Total energy + Delta-G solvation = -2802.104455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.33657 -38.11237 -35.23771 -33.86084 -32.16862 -31.19250 -29.31003 -28.26347 -25.72722 -23.75529 -23.18023 -20.90129 -20.09400 -19.21488 -17.87864 -16.41849 -16.29978 -15.59841 -15.15021 -14.65043 -14.40350 -13.99925 -13.83052 -13.50889 -13.35714 -13.16648 -12.61494 -12.30436 -11.82762 -11.69204 -11.60949 -11.41037 -11.32561 -11.08952 -11.04349 -10.96849 -10.62271 -10.43771 -10.20757 -9.49509 -8.46960 -8.44643 -8.07549 -7.95394 -6.40988 -3.81946 3.20644 3.26206 3.30646 3.71603 3.92026 4.15308 4.41798 4.58828 4.66961 4.91547 5.08635 5.11774 5.21932 5.24172 5.28096 5.32008 5.52169 5.53164 5.65350 5.73822 5.77912 5.81065 5.90334 5.98835 6.00336 6.08149 6.19821 6.32145 6.80412 6.93751 7.26257 7.55591 7.66106 8.06792 8.62040 9.18360 9.54978 10.06540 10.76716 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.076597 B = 0.003686 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.461113 B = 7595.165319 C = 7774.172283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.529 5.529 4 C 0.042 3.958 5 C -0.132 4.132 6 C 0.076 3.924 7 H 0.060 0.940 8 N -0.660 5.660 9 C 0.052 3.948 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.563 5.563 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.040 3.960 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.350 0.650 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.079 0.921 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 -6.633 3.837 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.254 5.254 4 C -0.086 4.086 5 C -0.171 4.171 6 C -0.035 4.035 7 H 0.078 0.922 8 N -0.292 5.292 9 C -0.081 4.081 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.088 4.088 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.224 -7.064 3.509 18.040 hybrid contribution 1.148 0.503 0.019 1.253 sum -15.076 -6.562 3.528 16.817 Atomic orbital electron populations 1.21772 0.94902 1.01309 1.02439 1.22254 0.96107 0.89167 1.00831 1.63600 1.14204 1.16214 1.31388 1.22840 0.97544 0.98858 0.89380 1.22869 0.94144 1.02170 0.97957 1.22704 0.88846 0.97223 0.94708 0.92218 1.60096 1.00563 1.18093 1.50497 1.21717 0.94881 0.90755 1.00735 1.19813 0.87217 0.85695 0.84662 1.90521 1.75090 1.23940 1.57282 1.41856 1.09633 1.07592 1.60916 1.19657 0.84403 0.95042 1.43876 0.87980 1.25261 1.00577 0.94614 0.97468 1.69606 1.37246 0.98018 1.49489 0.85915 0.81810 0.77266 0.79206 1.19876 1.20968 1.19912 1.23152 0.87384 0.98217 1.00081 0.91960 0.92762 0.92474 0.94598 0.90960 0.92677 0.90720 0.90351 0.90987 0.82952 0.89644 0.93750 0.77444 0.91810 0.90315 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.94 37.16 0.37 -0.81 16 2 C 0.04 0.43 5.26 -3.82 -0.02 0.41 16 3 N -0.53 -5.90 5.16 -231.24 -1.19 -7.10 16 4 C 0.04 0.44 6.20 -2.84 -0.02 0.43 16 5 C -0.13 -1.62 6.67 -24.77 -0.17 -1.79 16 6 C 0.08 1.01 3.38 -65.43 -0.22 0.79 16 7 H 0.06 0.78 7.83 -51.93 -0.41 0.38 16 8 N -0.66 -10.91 6.04 -105.58 -0.64 -11.55 16 9 C 0.05 0.93 6.03 -4.98 -0.03 0.90 16 10 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 11 O -0.58 -16.07 15.78 5.54 0.09 -15.98 16 12 N -0.56 -14.46 5.29 -10.97 -0.06 -14.52 16 13 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 14 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 17 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.04 0.47 6.09 -2.29 -0.01 0.46 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.43 7.14 -51.93 -0.37 0.06 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.35 7.96 -51.93 -0.41 -0.06 16 26 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.05 0.54 6.91 -51.93 -0.36 0.19 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.35 5.93 8.14 -39.29 -0.32 5.61 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.72 7.81 -51.93 -0.41 0.32 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -30.64 305.05 -7.83 -38.47 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.91 Total: 11.15 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.42 Total: 2.77 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -1.16 Total: -57.17 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.09 Total: -15.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.64 -7.83 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389350933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.865 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds