Wall clock time and date at job start Mon Mar 30 2020 03:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46800 * 2 1 4 4 C 1.47439 * 111.00045 * 290.12836 * 3 2 1 5 5 C 1.54322 * 107.36952 * 236.65966 * 4 3 2 6 6 C 1.55398 * 102.90031 * 337.89642 * 5 4 3 7 7 H 1.08999 * 110.90155 * 277.38192 * 6 5 4 8 8 N 1.46900 * 111.02637 * 153.63057 * 6 5 4 9 9 C 1.46905 * 110.99526 * 92.60604 * 8 6 5 10 10 C 1.50695 * 109.47113 * 179.97438 * 9 8 6 11 11 O 1.21299 * 119.99931 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00513 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00371 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99747 * 0.02562 * 13 12 10 15 15 C 1.38943 * 119.99717 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00424 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99911 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47011 * 60.00019 * 17 15 13 19 19 H 1.48497 * 109.47526 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47195 * 300.00452 * 17 15 13 21 21 C 1.47843 * 110.99640 * 169.28128 * 3 2 1 22 22 H 1.08997 * 109.47444 * 299.99462 * 1 2 3 23 23 H 1.08999 * 109.47770 * 60.00095 * 1 2 3 24 24 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47094 * 240.00397 * 2 1 3 26 26 H 1.08996 * 109.46905 * 120.00167 * 2 1 3 27 27 H 1.09002 * 109.88998 * 356.14887 * 4 3 2 28 28 H 1.09003 * 109.88733 * 117.17548 * 4 3 2 29 29 H 1.09005 * 110.70342 * 96.18020 * 5 4 3 30 30 H 1.08997 * 110.70605 * 219.41644 * 5 4 3 31 31 H 1.00899 * 110.99831 * 216.55485 * 8 6 5 32 32 H 1.08998 * 109.46778 * 299.99867 * 9 8 6 33 33 H 1.09001 * 109.47116 * 59.99892 * 9 8 6 34 34 H 0.96999 * 119.99257 * 359.97438 * 12 10 9 35 35 H 0.97005 * 120.00256 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.37823 * 265.19398 * 21 3 2 37 37 H 1.09001 * 110.37314 * 27.42672 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7491 2.0411 -1.2924 5 6 3.0998 2.5403 -1.8473 6 6 3.9837 2.6378 -0.5729 7 1 3.8062 3.5761 -0.0474 8 7 5.4064 2.4847 -0.9052 9 6 6.0356 3.7912 -1.1402 10 6 7.4912 3.5944 -1.4770 11 8 7.9584 2.4757 -1.5177 12 7 8.2737 4.6612 -1.7340 13 6 9.5981 4.4822 -2.0399 14 1 10.0142 3.4862 -2.0753 15 6 10.4048 5.5821 -2.3043 16 7 9.8983 6.7939 -2.2617 17 14 12.2092 5.3381 -2.7217 18 1 12.3259 4.5051 -3.9456 19 1 12.8454 6.6588 -2.9588 20 1 12.8908 4.6564 -1.5922 21 6 3.4748 1.4325 0.2567 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.3049 1.3264 -1.9853 28 1 1.0739 2.8843 -1.1461 29 1 3.5172 1.8200 -2.5510 30 1 2.9863 3.5176 -2.3162 31 1 5.8931 1.9734 -0.1842 32 1 5.5350 4.2916 -1.9691 33 1 5.9503 4.4024 -0.2418 34 1 7.8998 5.5556 -1.7026 35 1 10.4616 7.5618 -2.4459 36 1 3.6681 1.5932 1.3173 37 1 3.9497 0.5108 -0.0794 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389350933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:42 Heat of formation + Delta-G solvation = -57.502152 kcal Electronic energy + Delta-G solvation = -17089.774629 eV Core-core repulsion = 14286.633980 eV Total energy + Delta-G solvation = -2803.140650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46942 -39.83128 -36.53694 -35.80228 -33.36622 -33.05031 -30.20934 -29.45865 -27.35816 -25.42594 -23.97422 -21.88798 -21.16424 -20.94524 -19.91816 -17.88990 -17.33079 -16.89475 -16.65383 -16.33758 -15.90389 -15.28268 -15.22351 -14.66333 -14.40842 -14.35439 -14.09926 -13.50350 -13.42331 -13.13484 -12.84779 -12.53425 -12.50034 -12.43439 -12.21784 -12.12760 -11.99735 -11.88286 -11.57556 -11.51351 -10.36597 -10.03350 -9.42583 -9.30459 -8.47616 -5.96821 1.39378 1.41355 1.52469 2.03170 2.28000 2.70181 3.14792 3.19448 3.55111 3.62233 3.74953 4.14855 4.23056 4.26734 4.34065 4.38732 4.42816 4.52149 4.62290 4.65088 4.66905 4.88334 4.90694 4.97641 5.08558 5.12078 5.26077 5.36441 5.39673 5.85290 5.95541 6.08657 6.12461 6.35907 6.58551 7.10922 7.54250 8.09432 8.69594 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.076597 B = 0.003686 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.461113 B = 7595.165319 C = 7774.172283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 N -0.534 5.534 4 C 0.046 3.954 5 C -0.131 4.131 6 C 0.076 3.924 7 H 0.068 0.932 8 N -0.672 5.672 9 C 0.067 3.933 10 C 0.437 3.563 11 O -0.624 6.624 12 N -0.572 5.572 13 C -0.336 4.336 14 H 0.079 0.921 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.272 1.272 19 H -0.270 1.270 20 H -0.271 1.271 21 C 0.045 3.955 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.346 0.654 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.278 0.722 36 H 0.085 0.915 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 -6.281 4.028 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 N -0.259 5.259 4 C -0.082 4.082 5 C -0.170 4.170 6 C -0.034 4.034 7 H 0.086 0.914 8 N -0.305 5.305 9 C -0.065 4.065 10 C 0.225 3.775 11 O -0.511 6.511 12 N -0.209 5.209 13 C -0.466 4.466 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.817 3.183 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.196 1.196 21 C -0.084 4.084 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.165 0.835 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.185 -6.695 3.704 18.811 hybrid contribution 1.382 0.362 -0.031 1.429 sum -15.803 -6.334 3.673 17.416 Atomic orbital electron populations 1.21732 0.93536 1.02250 1.02347 1.22339 0.97208 0.88307 1.00804 1.63668 1.13366 1.17219 1.31634 1.22840 0.96684 0.99366 0.89266 1.22849 0.94740 1.02174 0.97232 1.22772 0.86830 0.98177 0.95632 0.91415 1.60095 1.02169 1.17288 1.50949 1.21566 0.90628 0.92061 1.02253 1.20846 0.89354 0.84592 0.82722 1.90489 1.76562 1.25443 1.58567 1.41923 1.09260 1.08254 1.61461 1.19644 0.86071 0.94579 1.46303 0.90306 1.26052 1.04483 0.94094 0.96580 1.69667 1.38729 0.98514 1.49184 0.84984 0.76725 0.77759 0.78841 1.19729 1.19397 1.19622 1.23088 0.87936 0.97161 1.00174 0.92146 0.92681 0.91083 0.95047 0.90631 0.91888 0.89663 0.92070 0.90273 0.83468 0.88020 0.91418 0.76939 0.91222 0.89653 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.94 71.98 0.72 -1.26 16 2 C 0.04 0.73 5.26 86.30 0.45 1.18 16 3 N -0.53 -10.96 5.16 -885.52 -4.57 -15.53 16 4 C 0.05 0.89 6.20 86.65 0.54 1.43 16 5 C -0.13 -3.01 6.67 31.87 0.21 -2.80 16 6 C 0.08 1.90 3.38 46.39 0.16 2.06 16 7 H 0.07 1.62 7.83 -2.39 -0.02 1.60 16 8 N -0.67 -21.75 6.04 -487.96 -2.95 -24.70 16 9 C 0.07 2.35 6.03 85.55 0.52 2.87 16 10 C 0.44 21.12 7.82 87.66 0.69 21.81 16 11 O -0.62 -35.09 15.78 -3.09 -0.05 -35.14 16 12 N -0.57 -29.70 5.29 -306.99 -1.62 -31.32 16 13 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 14 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 16 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 17 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 C 0.04 1.01 6.09 86.78 0.53 1.54 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 23 H 0.05 0.76 7.14 -2.39 -0.02 0.74 16 24 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.03 0.58 7.96 -2.39 -0.02 0.56 16 26 H 0.08 1.27 8.07 -2.39 -0.02 1.25 16 27 H 0.06 1.12 6.91 -2.39 -0.02 1.10 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.35 11.66 8.14 -89.69 -0.73 10.93 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 34 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 35 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.19 7.81 -2.39 -0.02 1.17 16 Total: -1.00 -65.25 305.05 -2.19 -67.44 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.40 Total: 35.61 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.09 Total: 8.15 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -8.85 Total: -121.18 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.05 Total: -35.14 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.25 -2.19 -67.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389350933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.934 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds