Wall clock time and date at job start Mon Mar 30 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.88581 * 322.57745 * 13 12 11 15 15 C 1.55153 * 111.00227 * 198.65043 * 13 12 11 16 16 C 1.54323 * 102.94155 * 206.42522 * 15 13 12 17 17 N 1.47026 * 107.26991 * 22.19645 * 16 15 13 18 18 C 1.34776 * 125.64910 * 181.09903 * 17 16 15 19 19 N 1.34774 * 119.99926 * 359.94946 * 18 17 16 20 20 O 1.21592 * 120.00038 * 179.97438 * 18 17 16 21 21 C 1.47421 * 108.70167 * 1.05899 * 17 16 15 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.00902 * 111.00582 * 303.95797 * 12 11 10 30 30 H 1.09003 * 110.72448 * 324.78782 * 15 13 12 31 31 H 1.08997 * 110.71751 * 88.06591 * 15 13 12 32 32 H 1.09001 * 109.88570 * 262.77862 * 16 15 13 33 33 H 1.08997 * 109.88628 * 141.60920 * 16 15 13 34 34 H 0.97000 * 120.00333 * 0.02562 * 19 18 17 35 35 H 0.97001 * 119.99922 * 180.02562 * 19 18 17 36 36 H 1.09007 * 110.36333 * 217.03422 * 21 17 16 37 37 H 1.08993 * 110.37007 * 94.71412 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 1 0.8392 -7.3508 0.6216 15 6 2.6766 -8.5379 0.4644 16 6 2.0722 -9.7821 -0.2199 17 7 1.2832 -9.3094 -1.3669 18 6 0.5783 -10.0893 -2.2103 19 7 0.5597 -11.4256 -2.0359 20 8 -0.0404 -9.5874 -3.1289 21 6 1.3900 -7.8409 -1.4411 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 3.0694 -6.0367 -0.7812 30 1 3.6948 -8.3631 0.1169 31 1 2.6508 -8.6436 1.5489 32 1 1.4272 -10.3136 0.4799 33 1 2.8700 -10.4398 -0.5647 34 1 1.0533 -11.8260 -1.3032 35 1 0.0527 -11.9870 -2.6432 36 1 0.4408 -7.4070 -1.7558 37 1 2.1859 -7.5526 -2.1277 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393296527.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:35 Heat of formation + Delta-G solvation = -70.827433 kcal Electronic energy + Delta-G solvation = -16917.521659 eV Core-core repulsion = 14113.803182 eV Total energy + Delta-G solvation = -2803.718477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27709 -39.12402 -36.97174 -35.36082 -34.59635 -33.07319 -31.23726 -29.35345 -27.45688 -24.88387 -23.86526 -22.26979 -21.49750 -21.10242 -19.25645 -18.51946 -18.00117 -17.22077 -16.65467 -16.49710 -16.03143 -15.79759 -15.29187 -14.85775 -14.42857 -14.19000 -14.02355 -13.80678 -13.51995 -13.36024 -12.82081 -12.67461 -12.48134 -12.43108 -12.13288 -11.71870 -11.54983 -11.51757 -11.36324 -11.06225 -10.77557 -10.54823 -9.70998 -9.40059 -8.19506 -6.30679 1.40665 1.42253 1.53567 1.68746 2.05726 2.41691 3.08617 3.13724 3.36335 3.67368 3.71205 4.01890 4.24293 4.27950 4.34785 4.41087 4.61082 4.71669 4.75339 4.78777 4.98978 5.04395 5.09722 5.21101 5.25439 5.28029 5.53420 5.76215 5.87016 5.91378 5.95114 6.02374 6.27118 6.42153 6.86919 6.89144 7.38736 7.55760 8.92528 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049427 B = 0.003501 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.361608 B = 7995.140981 C = 8354.053831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.092 4.092 11 C 0.069 3.931 12 N -0.667 5.667 13 C 0.078 3.922 14 H 0.088 0.912 15 C -0.109 4.109 16 C 0.098 3.902 17 N -0.634 5.634 18 C 0.712 3.288 19 N -0.841 5.841 20 O -0.652 6.652 21 C 0.094 3.906 22 H 0.263 0.737 23 H -0.013 1.013 24 H -0.008 1.008 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.019 0.981 28 H 0.065 0.935 29 H 0.348 0.652 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.414 0.586 35 H 0.421 0.579 36 H 0.047 0.953 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -24.587 1.722 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.130 4.130 11 C -0.060 4.060 12 N -0.297 5.297 13 C -0.034 4.034 14 H 0.107 0.893 15 C -0.147 4.147 16 C -0.024 4.024 17 N -0.373 5.373 18 C 0.411 3.589 19 N -0.410 5.410 20 O -0.535 6.535 21 C -0.032 4.032 22 H 0.072 0.928 23 H 0.006 0.994 24 H 0.010 0.990 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.167 0.833 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.255 0.745 36 H 0.066 0.934 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.192 -24.059 1.845 24.912 hybrid contribution -0.522 0.751 -1.105 1.434 sum 5.670 -23.309 0.741 24.000 Atomic orbital electron populations 1.70107 1.07880 1.27758 1.51839 1.26025 0.95786 1.03515 0.94773 0.85423 0.78718 0.78303 0.78467 1.19851 1.20764 1.18525 1.21720 0.93622 0.92371 1.50318 0.92035 1.18984 0.94504 0.93287 0.94662 1.21369 0.97975 0.92693 1.00994 1.21894 0.94065 0.90331 0.99696 1.60606 1.18883 1.00406 1.49838 1.22820 0.97723 0.89745 0.93091 0.89345 1.22613 0.99158 0.90819 1.02129 1.22338 0.95314 0.97969 0.86776 1.47475 1.51729 1.07002 1.31064 1.15787 0.79184 0.82711 0.81191 1.42709 1.57180 1.04108 1.37048 1.90950 1.51342 1.74859 1.36319 1.22883 1.00996 0.79848 0.99496 0.92810 0.99430 0.98963 0.92371 0.93038 0.96280 0.91624 0.83285 0.89341 0.87824 0.89316 0.88976 0.75457 0.74526 0.93407 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.25 4.97 29.84 0.15 1.40 16 10 C -0.09 -3.78 5.41 30.59 0.17 -3.61 16 11 C 0.07 2.32 5.55 86.30 0.48 2.80 16 12 N -0.67 -16.93 6.37 -484.42 -3.09 -20.02 16 13 C 0.08 1.62 3.32 46.30 0.15 1.77 16 14 H 0.09 1.97 7.92 -2.39 -0.02 1.95 16 15 C -0.11 -1.40 6.65 31.78 0.21 -1.19 16 16 C 0.10 1.04 6.15 86.73 0.53 1.58 16 17 N -0.63 -12.84 3.33 -829.76 -2.76 -15.60 16 18 C 0.71 17.18 8.76 179.06 1.57 18.75 16 19 N -0.84 -10.67 8.83 -184.75 -1.63 -12.30 16 20 O -0.65 -23.35 17.43 -4.01 -0.07 -23.42 16 21 C 0.09 2.26 6.49 86.86 0.56 2.83 16 22 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 23 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 29 H 0.35 8.20 8.31 -89.69 -0.74 7.46 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.41 2.24 7.82 -92.71 -0.72 1.52 16 35 H 0.42 4.44 8.93 -92.71 -0.83 3.61 16 36 H 0.05 1.44 8.04 -2.38 -0.02 1.42 16 37 H 0.07 1.57 7.80 -2.39 -0.02 1.55 16 Total: -1.00 -76.67 308.22 -1.94 -78.61 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -1.22 Total: 10.27 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 4.52 Total: -6.61 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -7.20 Total: -105.75 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.07 Total: -23.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -76.67 -1.94 -78.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393296527.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.784 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds