Wall clock time and date at job start Mon Mar 30 2020 03:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47184 * 2 1 4 4 H 1.08994 * 109.47225 * 305.64976 * 3 2 1 5 5 C 1.50696 * 109.47210 * 185.64714 * 3 2 1 6 6 H 1.07997 * 120.00462 * 240.00216 * 5 3 2 7 7 C 1.37880 * 119.99784 * 60.00013 * 5 3 2 8 8 N 1.31509 * 120.00011 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99799 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47436 * 60.00218 * 9 7 5 11 11 H 1.48497 * 109.47302 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47263 * 300.00203 * 9 7 5 13 13 N 1.46903 * 109.47021 * 65.64688 * 3 2 1 14 14 C 1.46906 * 111.00034 * 205.77804 * 13 3 2 15 15 H 1.08999 * 110.91511 * 322.05139 * 14 13 3 16 16 C 1.55440 * 111.11525 * 198.05113 * 14 13 3 17 17 C 1.54325 * 102.96482 * 206.46458 * 16 14 13 18 18 N 1.47019 * 107.27459 * 22.19622 * 17 16 14 19 19 C 1.34773 * 125.65083 * 181.04033 * 18 17 16 20 20 N 1.34774 * 120.00442 * 0.02562 * 19 18 17 21 21 O 1.21586 * 120.00153 * 180.02562 * 19 18 17 22 22 C 1.47425 * 108.70167 * 1.05540 * 18 17 16 23 23 H 1.08998 * 109.47003 * 174.46042 * 1 2 3 24 24 H 1.09004 * 109.47271 * 294.46532 * 1 2 3 25 25 H 1.09001 * 109.46524 * 54.46204 * 1 2 3 26 26 H 1.08997 * 109.46802 * 239.99993 * 2 1 3 27 27 H 1.09002 * 109.46914 * 119.99857 * 2 1 3 28 28 H 0.97003 * 119.99815 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00463 * 329.73398 * 13 3 2 30 30 H 1.09001 * 110.70999 * 88.09665 * 16 14 13 31 31 H 1.08997 * 110.86313 * 324.90853 * 16 14 13 32 32 H 1.09005 * 109.88288 * 262.77576 * 17 16 14 33 33 H 1.09003 * 110.01381 * 141.68419 * 17 16 14 34 34 H 0.97008 * 119.99686 * 0.02562 * 20 19 18 35 35 H 0.96998 * 120.00995 * 180.02562 * 20 19 18 36 36 H 1.09002 * 110.36572 * 94.71307 * 22 18 17 37 37 H 1.08993 * 110.37140 * 216.92515 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8350 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8864 0.6315 7 6 4.1300 0.8830 -1.2525 8 7 3.3829 0.3448 -2.1914 9 14 5.9900 0.8852 -1.4254 10 1 6.5939 0.1461 -0.2878 11 1 6.3694 0.2257 -2.7006 12 1 6.4855 2.2851 -1.4250 13 7 1.6648 2.0945 1.2618 14 6 1.5662 3.5505 1.0930 15 1 2.3442 3.9182 0.4240 16 6 1.6212 4.2783 2.4654 17 6 0.8509 5.5877 2.1940 18 7 -0.0161 5.3510 1.0305 19 6 -0.8364 6.2584 0.4646 20 7 -0.9086 7.5071 0.9665 21 8 -1.5112 5.9505 -0.4988 22 6 0.1601 3.9566 0.5855 23 1 -0.3633 -1.0229 -0.0992 24 1 -0.3634 0.4256 0.9354 25 1 -0.3632 0.5973 -0.8363 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7978 -0.0507 -2.9740 29 1 0.8036 1.7133 1.6237 30 1 2.6524 4.4892 2.7488 31 1 1.1233 3.6907 3.2366 32 1 1.5530 6.3924 1.9756 33 1 0.2444 5.8502 3.0609 34 1 -0.3699 7.7529 1.7349 35 1 -1.4992 8.1601 0.5594 36 1 -0.6029 3.3174 1.0299 37 1 0.1175 3.8971 -0.5019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393310573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:01 Heat of formation + Delta-G solvation = -33.723806 kcal Electronic energy + Delta-G solvation = -17973.030444 eV Core-core repulsion = 15170.920901 eV Total energy + Delta-G solvation = -2802.109543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00891 -37.73320 -35.60094 -33.64073 -32.32018 -31.25726 -29.72907 -27.71015 -25.93786 -23.47034 -22.59871 -20.39588 -19.94231 -19.58431 -18.11698 -16.85426 -16.24530 -15.93371 -14.94041 -14.82792 -14.35713 -14.19307 -13.62359 -13.12761 -12.80605 -12.63992 -12.50792 -12.16222 -11.81591 -11.50415 -11.20692 -11.06924 -10.78430 -10.65906 -10.40922 -10.15819 -9.96739 -9.69105 -9.68134 -9.57823 -9.13542 -8.47325 -8.34656 -7.32465 -5.96700 -4.01440 2.87331 3.29928 3.34023 3.38842 3.41320 4.26827 4.44236 4.78027 4.96145 5.13007 5.28651 5.38294 5.51367 5.70159 5.75352 6.08025 6.10486 6.16521 6.18337 6.27895 6.34308 6.43531 6.61477 6.84453 6.85751 6.99534 7.08097 7.15603 7.47882 7.76763 7.89790 7.98180 8.23598 8.37189 8.68664 8.70173 9.05639 9.63498 11.08646 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.006281 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.760121 B = 4456.500031 C = 4769.105422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.217 3.783 4 H 0.006 0.994 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.669 5.669 14 C 0.090 3.910 15 H 0.098 0.902 16 C -0.122 4.122 17 C 0.100 3.900 18 N -0.630 5.630 19 C 0.720 3.280 20 N -0.868 5.868 21 O -0.596 6.596 22 C 0.094 3.906 23 H 0.038 0.962 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.320 0.680 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.395 0.605 35 H 0.412 0.588 36 H 0.060 0.940 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.185 9.897 9.419 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.110 3.890 4 H 0.024 0.976 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.299 5.299 14 C -0.023 4.023 15 H 0.116 0.884 16 C -0.160 4.160 17 C -0.023 4.023 18 N -0.369 5.369 19 C 0.420 3.580 20 N -0.437 5.437 21 O -0.474 6.474 22 C -0.031 4.031 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.223 0.777 35 H 0.243 0.757 36 H 0.078 0.922 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.934 9.467 8.796 13.833 hybrid contribution 0.150 0.506 -0.409 0.668 sum -4.784 9.973 8.387 13.881 Atomic orbital electron populations 1.21897 0.99523 0.99844 0.99596 1.21781 0.91264 1.00284 1.03160 1.19222 0.95577 0.90077 0.84153 0.97609 1.21151 0.91149 1.36883 1.04302 0.92070 1.24960 0.98076 0.95611 0.95848 1.69859 1.34800 1.39213 1.09551 0.86606 0.85780 0.78098 0.77140 1.20317 1.21481 1.20474 1.60787 1.36163 1.00391 1.32593 1.22750 0.93977 0.90633 0.94945 0.88353 1.22685 1.00509 0.93954 0.98861 1.22057 0.92891 0.99487 0.87912 1.47526 1.43914 1.12476 1.33026 1.15516 0.79996 0.80425 0.82091 1.42969 1.50841 1.12258 1.37604 1.90966 1.48077 1.79309 1.29043 1.23116 0.98938 0.79891 1.01172 0.94333 0.94684 0.93731 0.88166 0.94009 0.92968 0.86129 0.89825 0.90571 0.91887 0.92102 0.77733 0.75682 0.92221 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.65 37.16 0.36 -2.54 16 2 C -0.13 -2.91 5.36 -26.73 -0.14 -3.05 16 3 C 0.22 5.18 1.91 -68.87 -0.13 5.05 16 4 H 0.01 0.17 7.73 -51.93 -0.40 -0.24 16 5 C -0.50 -13.27 8.58 -34.44 -0.30 -13.56 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.89 -25.25 11.29 55.43 0.63 -24.62 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -13.18 6.18 -98.55 -0.61 -13.79 16 14 C 0.09 1.55 3.11 -65.41 -0.20 1.35 16 15 H 0.10 1.96 7.80 -51.93 -0.41 1.56 16 16 C -0.12 -1.58 6.66 -24.74 -0.16 -1.75 16 17 C 0.10 1.12 6.15 -3.07 -0.02 1.10 16 18 N -0.63 -9.39 3.33 -176.24 -0.59 -9.97 16 19 C 0.72 11.35 8.76 -86.92 -0.76 10.58 16 20 N -0.87 -8.86 8.83 27.63 0.24 -8.62 16 21 O -0.60 -12.21 17.43 5.29 0.09 -12.12 16 22 C 0.09 1.61 6.35 -2.53 -0.02 1.60 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.03 0.59 6.65 -51.93 -0.35 0.25 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.32 5.79 6.17 -39.30 -0.24 5.55 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.39 2.86 7.82 -40.82 -0.32 2.54 16 35 H 0.41 3.54 8.93 -40.82 -0.36 3.18 16 36 H 0.06 1.00 7.81 -51.93 -0.41 0.59 16 37 H 0.08 1.53 8.03 -51.93 -0.42 1.12 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -31.46 299.72 -7.92 -39.38 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.71 Total: 8.81 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.47 Total: 0.21 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.33 Total: -57.01 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.46 -7.92 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393310573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.654 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds