Wall clock time and date at job start Mon Mar 30 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47184 * 2 1 4 4 H 1.08994 * 109.47225 * 305.64976 * 3 2 1 5 5 C 1.50696 * 109.47210 * 185.64714 * 3 2 1 6 6 H 1.07997 * 120.00462 * 240.00216 * 5 3 2 7 7 C 1.37880 * 119.99784 * 60.00013 * 5 3 2 8 8 N 1.31509 * 120.00011 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99799 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47436 * 60.00218 * 9 7 5 11 11 H 1.48497 * 109.47302 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47263 * 300.00203 * 9 7 5 13 13 N 1.46903 * 109.47021 * 65.64688 * 3 2 1 14 14 C 1.46906 * 111.00034 * 205.77804 * 13 3 2 15 15 H 1.08999 * 110.91511 * 322.05139 * 14 13 3 16 16 C 1.55440 * 111.11525 * 198.05113 * 14 13 3 17 17 C 1.54325 * 102.96482 * 206.46458 * 16 14 13 18 18 N 1.47019 * 107.27459 * 22.19622 * 17 16 14 19 19 C 1.34773 * 125.65083 * 181.04033 * 18 17 16 20 20 N 1.34774 * 120.00442 * 0.02562 * 19 18 17 21 21 O 1.21586 * 120.00153 * 180.02562 * 19 18 17 22 22 C 1.47425 * 108.70167 * 1.05540 * 18 17 16 23 23 H 1.08998 * 109.47003 * 174.46042 * 1 2 3 24 24 H 1.09004 * 109.47271 * 294.46532 * 1 2 3 25 25 H 1.09001 * 109.46524 * 54.46204 * 1 2 3 26 26 H 1.08997 * 109.46802 * 239.99993 * 2 1 3 27 27 H 1.09002 * 109.46914 * 119.99857 * 2 1 3 28 28 H 0.97003 * 119.99815 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00463 * 329.73398 * 13 3 2 30 30 H 1.09001 * 110.70999 * 88.09665 * 16 14 13 31 31 H 1.08997 * 110.86313 * 324.90853 * 16 14 13 32 32 H 1.09005 * 109.88288 * 262.77576 * 17 16 14 33 33 H 1.09003 * 110.01381 * 141.68419 * 17 16 14 34 34 H 0.97008 * 119.99686 * 0.02562 * 20 19 18 35 35 H 0.96998 * 120.00995 * 180.02562 * 20 19 18 36 36 H 1.09002 * 110.36572 * 94.71307 * 22 18 17 37 37 H 1.08993 * 110.37140 * 216.92515 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8350 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8864 0.6315 7 6 4.1300 0.8830 -1.2525 8 7 3.3829 0.3448 -2.1914 9 14 5.9900 0.8852 -1.4254 10 1 6.5939 0.1461 -0.2878 11 1 6.3694 0.2257 -2.7006 12 1 6.4855 2.2851 -1.4250 13 7 1.6648 2.0945 1.2618 14 6 1.5662 3.5505 1.0930 15 1 2.3442 3.9182 0.4240 16 6 1.6212 4.2783 2.4654 17 6 0.8509 5.5877 2.1940 18 7 -0.0161 5.3510 1.0305 19 6 -0.8364 6.2584 0.4646 20 7 -0.9086 7.5071 0.9665 21 8 -1.5112 5.9505 -0.4988 22 6 0.1601 3.9566 0.5855 23 1 -0.3633 -1.0229 -0.0992 24 1 -0.3634 0.4256 0.9354 25 1 -0.3632 0.5973 -0.8363 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7978 -0.0507 -2.9740 29 1 0.8036 1.7133 1.6237 30 1 2.6524 4.4892 2.7488 31 1 1.1233 3.6907 3.2366 32 1 1.5530 6.3924 1.9756 33 1 0.2444 5.8502 3.0609 34 1 -0.3699 7.7529 1.7349 35 1 -1.4992 8.1601 0.5594 36 1 -0.6029 3.3174 1.0299 37 1 0.1175 3.8971 -0.5019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393310573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:00 Heat of formation + Delta-G solvation = -58.569655 kcal Electronic energy + Delta-G solvation = -17974.107840 eV Core-core repulsion = 15170.920901 eV Total energy + Delta-G solvation = -2803.186940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23255 -39.13920 -37.23083 -34.87931 -34.09936 -32.84680 -30.97689 -29.25889 -27.72464 -24.95302 -24.13675 -21.75992 -21.46645 -21.04133 -19.22202 -18.27032 -17.98589 -17.24832 -16.65451 -16.12081 -15.98515 -15.57435 -15.07391 -14.73213 -14.30267 -13.99879 -13.88035 -13.74914 -13.27641 -13.12110 -12.83988 -12.60764 -12.54268 -12.42513 -11.96043 -11.69054 -11.52809 -11.51283 -11.26059 -11.04620 -10.75279 -10.41487 -9.64299 -9.02691 -8.04585 -6.16811 1.43820 1.45067 1.52611 1.72947 2.08529 2.45675 3.20851 3.29231 3.55888 3.79115 3.88106 4.17623 4.30958 4.44015 4.51157 4.57344 4.63749 4.71145 4.80920 4.92138 5.07274 5.13187 5.20876 5.30009 5.30527 5.38171 5.63002 5.77014 5.91505 5.96914 5.97610 6.36891 6.49456 6.93331 6.95278 6.98833 7.52188 7.58503 8.98678 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.006281 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.760121 B = 4456.500031 C = 4769.105422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.224 3.776 4 H -0.033 1.033 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.664 5.664 14 C 0.086 3.914 15 H 0.065 0.935 16 C -0.109 4.109 17 C 0.101 3.899 18 N -0.633 5.633 19 C 0.711 3.289 20 N -0.839 5.839 21 O -0.652 6.652 22 C 0.103 3.897 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.259 0.741 29 H 0.332 0.668 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.414 0.586 35 H 0.422 0.578 36 H 0.066 0.934 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 11.184 11.937 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.115 3.885 4 H -0.015 1.015 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.294 5.294 14 C -0.026 4.026 15 H 0.083 0.917 16 C -0.147 4.147 17 C -0.021 4.021 18 N -0.371 5.371 19 C 0.411 3.589 20 N -0.409 5.409 21 O -0.535 6.535 22 C -0.024 4.024 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.151 0.849 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.245 0.755 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.727 10.813 11.387 16.399 hybrid contribution 0.081 0.153 -1.171 1.184 sum -4.647 10.967 10.216 15.691 Atomic orbital electron populations 1.21766 0.96530 1.01076 1.00389 1.21608 0.93961 0.99090 1.01416 1.18953 0.94142 0.90613 0.84751 1.01543 1.21462 0.92701 1.36508 1.04174 0.92608 1.25718 1.02299 0.95443 0.95664 1.70012 1.36368 1.39967 1.09916 0.85641 0.80781 0.78203 0.77151 1.19507 1.21386 1.19970 1.60701 1.36938 1.01713 1.30093 1.22684 0.92957 0.89440 0.97516 0.91708 1.22641 1.01878 0.94257 0.95928 1.22306 0.93103 0.99020 0.87648 1.47500 1.44304 1.11348 1.33938 1.15781 0.79684 0.81734 0.81679 1.42663 1.50480 1.10221 1.37537 1.90929 1.50364 1.80570 1.31644 1.22802 0.98963 0.81941 0.98653 0.92429 0.92108 0.95099 0.91579 0.93931 0.93199 0.84892 0.88740 0.89134 0.89730 0.88320 0.75455 0.74483 0.91604 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.65 71.98 0.69 -4.63 16 2 C -0.12 -5.72 5.36 30.59 0.16 -5.56 16 3 C 0.22 11.04 1.91 44.17 0.08 11.12 16 4 H -0.03 -1.86 7.73 -2.39 -0.02 -1.88 16 5 C -0.51 -27.89 8.58 25.60 0.22 -27.67 16 6 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.37 5.29 84.66 0.45 0.82 16 8 N -0.92 -53.78 11.29 21.45 0.24 -53.54 16 9 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.66 -26.07 6.18 -465.70 -2.88 -28.95 16 14 C 0.09 2.99 3.11 46.41 0.14 3.13 16 15 H 0.06 2.68 7.80 -2.39 -0.02 2.66 16 16 C -0.11 -2.52 6.66 31.88 0.21 -2.30 16 17 C 0.10 1.88 6.15 86.73 0.53 2.42 16 18 N -0.63 -17.90 3.33 -829.76 -2.76 -20.66 16 19 C 0.71 21.61 8.76 179.06 1.57 23.18 16 20 N -0.84 -14.83 8.83 -184.75 -1.63 -16.46 16 21 O -0.65 -27.15 17.43 -3.99 -0.07 -27.22 16 22 C 0.10 3.57 6.35 86.86 0.55 4.12 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.06 1.97 6.65 -2.38 -0.02 1.96 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 3.57 5.94 -2.39 -0.01 3.56 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.33 11.62 6.17 -89.70 -0.55 11.07 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.41 4.28 7.82 -92.70 -0.72 3.56 16 35 H 0.42 6.22 8.93 -92.71 -0.83 5.39 16 36 H 0.07 2.18 7.81 -2.39 -0.02 2.16 16 37 H 0.03 1.48 8.03 -2.39 -0.02 1.46 16 Total: -1.00 -71.97 299.72 -1.47 -73.44 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -1.02 Total: 22.70 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 4.62 Total: 4.63 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -7.03 Total: -119.61 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.07 Total: -27.22 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.97 -1.47 -73.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393310573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.867 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds