Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.46890 * 111.00688 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47676 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.42918 * 54.29491 * 15 14 13 17 17 C 1.54896 * 110.48699 * 291.76162 * 15 14 13 18 18 C 1.54883 * 102.74899 * 203.37632 * 17 15 14 19 19 C 1.54266 * 104.19593 * 37.93847 * 18 17 15 20 20 H 1.08998 * 110.03334 * 95.67819 * 19 18 17 21 21 O 1.42904 * 110.03202 * 217.05618 * 19 18 17 22 22 C 1.54087 * 106.62311 * 336.28149 * 19 18 17 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 30 30 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 31 31 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 32 32 H 1.00909 * 110.99304 * 303.95833 * 13 12 11 33 33 H 1.09005 * 109.47135 * 300.00288 * 14 13 12 34 34 H 1.09002 * 109.47335 * 59.99960 * 14 13 12 35 35 H 1.09001 * 110.74914 * 321.69237 * 17 15 14 36 36 H 1.08996 * 110.75421 * 85.05431 * 17 15 14 37 37 H 1.08995 * 110.48817 * 156.61835 * 18 17 15 38 38 H 1.09002 * 110.48589 * 279.13290 * 18 17 15 39 39 H 0.96699 * 113.99856 * 298.54735 * 21 19 18 40 40 H 1.09000 * 110.15891 * 240.88109 * 22 19 18 41 41 H 1.08993 * 110.00444 * 119.38409 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 7 1.7402 -7.4222 0.0035 14 6 2.6646 -8.5638 0.0045 15 6 1.8647 -9.8680 0.0064 16 1 1.1573 -9.8816 -0.8228 17 6 1.1231 -10.0473 1.3544 18 6 0.9081 -11.5795 1.4251 19 6 2.2042 -12.1710 0.8335 20 1 2.8991 -12.4234 1.6344 21 8 1.9031 -13.3357 0.0621 22 6 2.8122 -11.0827 -0.0722 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 0.8541 -5.0447 0.8922 29 1 0.8534 -5.0451 -0.8877 30 1 3.1012 -6.0925 -0.8876 31 1 3.1013 -6.0919 0.8923 32 1 1.1040 -7.4717 0.7852 33 1 3.2927 -8.5236 -0.8855 34 1 3.2926 -8.5220 0.8945 35 1 1.7419 -9.7052 2.1840 36 1 0.1675 -9.5232 1.3422 37 1 0.7801 -11.8994 2.4592 38 1 0.0452 -11.8716 0.8267 39 1 1.4975 -14.0507 0.5714 40 1 2.8753 -11.4412 -1.0996 41 1 3.8029 -10.8075 0.2893 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395461555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -93.333552 kcal Electronic energy + Delta-G solvation = -16734.856881 eV Core-core repulsion = 14033.702809 eV Total energy + Delta-G solvation = -2701.154072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.31869 -36.90855 -35.38103 -33.81886 -32.09355 -29.87811 -28.68797 -27.30702 -24.63684 -23.22879 -21.45020 -20.87594 -20.13190 -19.79387 -17.91591 -16.28882 -16.00084 -15.77622 -14.94038 -14.56896 -14.41833 -14.31020 -13.91562 -13.44238 -13.26712 -12.53669 -12.46960 -12.24963 -11.77164 -11.63665 -11.54373 -11.16985 -11.00057 -10.92686 -10.83964 -10.81316 -10.50396 -10.45041 -10.39404 -10.19431 -9.60074 -9.22898 -8.97641 -8.35935 -8.30343 -5.95781 -3.97933 3.34132 3.40020 3.43528 3.83018 4.15085 4.26770 4.40192 4.49607 4.64466 4.90057 5.11859 5.12731 5.24116 5.30592 5.39472 5.40985 5.45485 5.52191 5.58907 5.63248 5.69371 5.76621 5.86701 5.93847 5.99335 6.16354 6.20233 6.30129 6.54600 6.85789 6.99488 7.07977 7.26350 7.31389 7.45324 7.73513 7.89665 8.05551 8.48386 9.09650 9.65763 11.15602 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.082870 B = 0.002721 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.796711 B =10288.343763 C =10464.674768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.691 5.691 14 C 0.065 3.935 15 C -0.089 4.089 16 H 0.086 0.914 17 C -0.122 4.122 18 C -0.158 4.158 19 C 0.099 3.901 20 H 0.056 0.944 21 O -0.568 6.568 22 C -0.114 4.114 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.338 0.662 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.375 0.625 40 H 0.078 0.922 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -24.699 3.328 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.322 5.322 14 C -0.064 4.064 15 C -0.108 4.108 16 H 0.105 0.895 17 C -0.159 4.159 18 C -0.195 4.195 19 C 0.040 3.960 20 H 0.074 0.926 21 O -0.373 6.373 22 C -0.152 4.152 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.222 0.778 40 H 0.097 0.903 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.689 -24.215 2.167 24.590 hybrid contribution 0.521 0.681 1.445 1.680 sum 4.211 -23.533 3.611 24.178 Atomic orbital electron populations 1.69967 1.06046 1.26506 1.51071 1.25040 0.94851 0.99236 0.95456 0.86607 0.79826 0.83554 0.78083 1.20671 1.21251 1.19934 1.21296 0.93013 0.91228 1.50265 0.92781 1.19095 0.94038 0.91351 0.97152 1.21589 0.99076 0.93982 1.00054 1.21636 0.97889 0.93870 1.01962 1.22075 0.96225 0.88605 1.00067 1.60505 1.19997 1.01737 1.49969 1.21986 0.94250 0.89782 1.00394 1.22009 0.97262 0.93102 0.98397 0.89526 1.22525 1.00962 0.95142 0.97295 1.23102 0.98615 0.96797 1.01019 1.22549 0.95090 0.85614 0.92749 0.92561 1.86564 1.84068 1.26568 1.40129 1.22188 0.98641 0.93457 1.00955 0.93056 0.96601 0.96740 0.93448 0.93714 0.92815 0.91640 0.91298 0.95676 0.84374 0.91058 0.95442 0.91487 0.90783 0.91557 0.90482 0.77776 0.90306 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -2.02 5.47 -26.74 -0.15 -2.17 16 12 C 0.06 0.86 5.68 -3.83 -0.02 0.83 16 13 N -0.69 -8.76 6.50 -113.79 -0.74 -9.50 16 14 C 0.07 0.69 5.03 -3.83 -0.02 0.67 16 15 C -0.09 -0.82 3.10 -88.96 -0.28 -1.10 16 16 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.12 -1.00 5.62 -24.74 -0.14 -1.14 16 18 C -0.16 -1.13 6.55 -25.08 -0.16 -1.30 16 19 C 0.10 0.77 4.27 -25.50 -0.11 0.66 16 20 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 21 O -0.57 -4.74 13.23 -35.23 -0.47 -5.20 16 22 C -0.11 -0.98 6.20 -25.51 -0.16 -1.14 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.34 4.02 7.92 -39.29 -0.31 3.71 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.28 8.06 -51.93 -0.42 -0.14 16 35 H 0.07 0.54 8.00 -51.93 -0.42 0.12 16 36 H 0.07 0.62 8.02 -51.93 -0.42 0.21 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.38 1.54 9.10 45.56 0.41 1.95 16 40 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 41 H 0.07 0.57 7.84 -51.93 -0.41 0.17 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -31.71 329.20 -9.25 -40.96 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.00 Total: -0.82 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.72 Total: -20.61 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.00 Total: -36.29 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.47 Total: -5.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.71 -9.25 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395461555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.375 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds