Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.46890 * 111.00688 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47676 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.42918 * 54.29491 * 15 14 13 17 17 C 1.54896 * 110.48699 * 291.76162 * 15 14 13 18 18 C 1.54883 * 102.74899 * 203.37632 * 17 15 14 19 19 C 1.54266 * 104.19593 * 37.93847 * 18 17 15 20 20 H 1.08998 * 110.03334 * 95.67819 * 19 18 17 21 21 O 1.42904 * 110.03202 * 217.05618 * 19 18 17 22 22 C 1.54087 * 106.62311 * 336.28149 * 19 18 17 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 30 30 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 31 31 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 32 32 H 1.00909 * 110.99304 * 303.95833 * 13 12 11 33 33 H 1.09005 * 109.47135 * 300.00288 * 14 13 12 34 34 H 1.09002 * 109.47335 * 59.99960 * 14 13 12 35 35 H 1.09001 * 110.74914 * 321.69237 * 17 15 14 36 36 H 1.08996 * 110.75421 * 85.05431 * 17 15 14 37 37 H 1.08995 * 110.48817 * 156.61835 * 18 17 15 38 38 H 1.09002 * 110.48589 * 279.13290 * 18 17 15 39 39 H 0.96699 * 113.99856 * 298.54735 * 21 19 18 40 40 H 1.09000 * 110.15891 * 240.88109 * 22 19 18 41 41 H 1.08993 * 110.00444 * 119.38409 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 7 1.7402 -7.4222 0.0035 14 6 2.6646 -8.5638 0.0045 15 6 1.8647 -9.8680 0.0064 16 1 1.1573 -9.8816 -0.8228 17 6 1.1231 -10.0473 1.3544 18 6 0.9081 -11.5795 1.4251 19 6 2.2042 -12.1710 0.8335 20 1 2.8991 -12.4234 1.6344 21 8 1.9031 -13.3357 0.0621 22 6 2.8122 -11.0827 -0.0722 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 0.8541 -5.0447 0.8922 29 1 0.8534 -5.0451 -0.8877 30 1 3.1012 -6.0925 -0.8876 31 1 3.1013 -6.0919 0.8923 32 1 1.1040 -7.4717 0.7852 33 1 3.2927 -8.5236 -0.8855 34 1 3.2926 -8.5220 0.8945 35 1 1.7419 -9.7052 2.1840 36 1 0.1675 -9.5232 1.3422 37 1 0.7801 -11.8994 2.4592 38 1 0.0452 -11.8716 0.8267 39 1 1.4975 -14.0507 0.5714 40 1 2.8753 -11.4412 -1.0996 41 1 3.8029 -10.8075 0.2893 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395461555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -115.285082 kcal Electronic energy + Delta-G solvation = -16735.808771 eV Core-core repulsion = 14033.702809 eV Total energy + Delta-G solvation = -2702.105962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99034 -37.93164 -36.50871 -35.37695 -33.86250 -31.02935 -29.66589 -28.51545 -26.21783 -24.34578 -22.89554 -21.78983 -21.49177 -20.65566 -18.54197 -18.41755 -17.13273 -16.56573 -16.41517 -16.06445 -15.61159 -15.10779 -14.67143 -14.64329 -14.31268 -14.16669 -13.70103 -13.53881 -13.11813 -13.03630 -12.83633 -12.42518 -12.30234 -12.19453 -12.09479 -11.93494 -11.59983 -11.58613 -11.50491 -11.35479 -11.29598 -10.94937 -10.77167 -10.55586 -9.35663 -8.19977 -6.31575 1.39437 1.41339 1.52432 2.40869 3.10983 3.12618 3.42344 3.62784 3.72219 3.94515 4.10175 4.20576 4.29949 4.45975 4.50205 4.52121 4.55634 4.64231 4.66140 4.76166 4.84144 4.86176 4.92020 4.97287 5.03923 5.07344 5.24558 5.25540 5.28516 5.33631 5.35739 5.46991 5.55203 5.78025 5.86870 6.10778 6.25780 6.48276 6.86069 6.92396 7.37724 8.91980 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.082870 B = 0.002721 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.796711 B =10288.343763 C =10464.674768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.070 3.930 13 N -0.699 5.699 14 C 0.068 3.932 15 C -0.084 4.084 16 H 0.070 0.930 17 C -0.121 4.121 18 C -0.152 4.152 19 C 0.098 3.902 20 H 0.071 0.929 21 O -0.587 6.587 22 C -0.115 4.115 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.010 1.010 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.344 0.656 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.393 0.607 40 H 0.065 0.935 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -25.260 4.066 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.059 4.059 13 N -0.330 5.330 14 C -0.061 4.061 15 C -0.103 4.103 16 H 0.088 0.912 17 C -0.158 4.158 18 C -0.189 4.189 19 C 0.040 3.960 20 H 0.089 0.911 21 O -0.396 6.396 22 C -0.153 4.153 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.008 0.992 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.242 0.758 40 H 0.084 0.916 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.029 -24.807 2.911 25.479 hybrid contribution 0.057 0.815 1.202 1.454 sum 5.087 -23.992 4.114 24.868 Atomic orbital electron populations 1.70104 1.07869 1.27786 1.51766 1.26039 0.95820 1.03535 0.94749 0.85418 0.78650 0.78266 0.78536 1.19729 1.20649 1.18658 1.21750 0.93575 0.92524 1.50430 0.92175 1.19029 0.94529 0.93324 0.94607 1.21398 0.97973 0.93674 1.00453 1.21466 0.98071 0.93407 1.01443 1.21846 0.95274 0.88239 1.00509 1.60445 1.20494 1.01591 1.50496 1.22005 0.94068 0.89387 1.00634 1.21911 0.97059 0.92799 0.98552 0.91166 1.22520 1.00675 0.95975 0.96680 1.23060 0.98153 0.95877 1.01854 1.22574 0.95504 0.85284 0.92671 0.91145 1.86520 1.84409 1.27368 1.41274 1.22191 0.99034 0.93511 1.00589 0.92760 0.99334 0.99154 0.93137 0.93047 0.92790 0.92772 0.91262 0.94825 0.83804 0.91418 0.94482 0.90878 0.91190 0.89934 0.91107 0.75768 0.91600 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.91 16 11 C -0.11 -3.66 5.47 30.59 0.17 -3.50 16 12 C 0.07 1.94 5.68 86.30 0.49 2.43 16 13 N -0.70 -16.87 6.50 -513.91 -3.34 -20.21 16 14 C 0.07 1.34 5.03 86.30 0.43 1.77 16 15 C -0.08 -1.47 3.10 -9.72 -0.03 -1.50 16 16 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 17 C -0.12 -1.79 5.62 31.89 0.18 -1.61 16 18 C -0.15 -1.90 6.55 31.67 0.21 -1.70 16 19 C 0.10 1.34 4.27 31.39 0.13 1.48 16 20 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 21 O -0.59 -8.95 13.23 -148.98 -1.97 -10.92 16 22 C -0.12 -1.84 6.20 31.39 0.19 -1.64 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.34 7.72 7.92 -89.69 -0.71 7.01 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.04 0.67 8.06 -2.39 -0.02 0.66 16 35 H 0.07 1.01 8.00 -2.39 -0.02 0.99 16 36 H 0.07 1.09 8.02 -2.39 -0.02 1.07 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 39 H 0.39 2.56 9.10 -74.06 -0.67 1.89 16 40 H 0.07 1.22 7.96 -2.39 -0.02 1.20 16 41 H 0.08 1.14 7.84 -2.39 -0.02 1.12 16 Total: -1.00 -67.66 329.20 -0.63 -68.29 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.40 Total: 12.07 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 2.78 Total: -38.27 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.06 Total: -78.19 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -1.97 Total: -10.92 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.66 -0.63 -68.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395461555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.994 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds