Wall clock time and date at job start Mon Mar 30 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46788 * 299.99742 * 3 2 1 6 6 H 1.48500 * 109.47255 * 59.99474 * 3 2 1 7 7 C 1.37877 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00573 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99461 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46851 * 179.97438 * 11 10 9 13 13 N 1.46509 * 109.46908 * 180.02562 * 12 11 10 14 14 C 1.46382 * 119.32375 * 270.23883 * 13 12 11 15 15 C 1.53241 * 109.25163 * 151.16757 * 14 13 12 16 16 C 1.53249 * 108.56083 * 55.28369 * 15 14 13 17 17 N 1.46378 * 109.15134 * 304.51360 * 16 15 14 18 18 N 1.36600 * 119.32974 * 209.08498 * 17 16 15 19 19 C 1.34133 * 119.33152 * 90.00248 * 13 12 11 20 20 O 1.21593 * 118.69649 * 0.54753 * 19 13 12 21 21 H 0.97000 * 119.99906 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47000 * 60.00007 * 9 7 2 23 23 H 1.09001 * 109.46698 * 299.99815 * 9 7 2 24 24 H 1.09005 * 109.46830 * 60.00046 * 10 9 7 25 25 H 1.08999 * 109.47329 * 300.00090 * 10 9 7 26 26 H 1.09005 * 109.46960 * 60.00623 * 11 10 9 27 27 H 1.08999 * 109.47634 * 300.00401 * 11 10 9 28 28 H 1.08998 * 109.47116 * 60.00777 * 12 11 10 29 29 H 1.09001 * 109.47451 * 300.00053 * 12 11 10 30 30 H 1.08998 * 109.63360 * 31.13905 * 14 13 12 31 31 H 1.08997 * 109.31029 * 271.00127 * 14 13 12 32 32 H 1.08991 * 109.62655 * 295.55559 * 15 14 13 33 33 H 1.09000 * 109.61865 * 175.00119 * 15 14 13 34 34 H 1.09005 * 109.52122 * 184.61604 * 16 15 14 35 35 H 1.08998 * 109.52707 * 64.41958 * 16 15 14 36 36 H 1.00893 * 111.00263 * 179.97438 * 18 17 16 37 37 H 1.00901 * 110.99526 * 303.93593 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0005 13 7 1.7420 -7.4187 0.0005 14 6 1.3795 -8.0372 1.2768 15 6 0.0996 -8.8599 1.0940 16 6 0.3238 -9.8651 -0.0408 17 7 0.7389 -9.1446 -1.2455 18 7 0.4331 -9.6608 -2.4727 19 6 1.4131 -7.9875 -1.1688 20 8 1.7435 -7.4349 -2.2003 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8903 24 1 2.8720 -3.6042 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 0.8534 -5.0450 -0.8887 27 1 0.8539 -5.0445 0.8913 28 1 3.1018 -6.0922 0.8901 29 1 3.1007 -6.0923 -0.8899 30 1 1.2107 -7.2622 2.0244 31 1 2.1887 -8.6901 1.6037 32 1 -0.7277 -8.1980 0.8386 33 1 -0.1269 -9.3942 2.0167 34 1 -0.6033 -10.4030 -0.2394 35 1 1.1018 -10.5721 0.2471 36 1 0.7767 -9.0654 -3.2112 37 1 0.7902 -10.5996 -2.5692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395499034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:04 Heat of formation + Delta-G solvation = -13.981194 kcal Electronic energy + Delta-G solvation = -17443.747593 eV Core-core repulsion = 14642.494153 eV Total energy + Delta-G solvation = -2801.253439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93250 -36.91731 -36.56974 -34.55795 -32.73762 -31.54648 -29.29640 -28.60313 -26.00063 -24.36199 -23.25836 -21.64222 -20.01905 -19.09326 -18.00247 -17.39239 -16.26885 -15.96763 -15.66517 -14.97772 -14.42777 -14.35469 -14.28755 -13.98235 -13.86738 -12.66512 -12.52312 -12.08238 -11.88612 -11.71193 -11.63380 -11.51058 -10.94646 -10.88692 -10.49326 -10.45571 -10.44174 -10.08143 -9.58349 -9.36433 -9.03060 -8.62786 -8.28862 -7.98786 -5.93638 -3.95679 2.30433 3.09434 3.34954 3.39098 3.42125 3.46703 4.37769 4.47884 4.51253 4.75820 4.90097 5.02800 5.18744 5.26247 5.38364 5.42110 5.44558 5.61786 5.79034 5.86368 5.96560 6.14964 6.27406 6.55752 6.64489 6.86202 7.00933 7.01553 7.24230 7.42564 7.75952 7.76002 7.91972 8.07713 8.50435 8.61481 9.12094 9.68038 11.17840 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045340 B = 0.004086 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.412641 B = 6850.412887 C = 7002.383494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.131 4.131 12 C 0.130 3.870 13 N -0.617 5.617 14 C 0.109 3.891 15 C -0.151 4.151 16 C 0.130 3.870 17 N -0.479 5.479 18 N -0.592 5.592 19 C 0.694 3.306 20 O -0.596 6.596 21 H 0.259 0.741 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.372 0.628 37 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -22.621 3.427 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.169 4.169 12 C 0.008 3.992 13 N -0.354 5.354 14 C -0.014 4.014 15 C -0.190 4.190 16 C 0.007 3.993 17 N -0.306 5.306 18 N -0.220 5.220 19 C 0.395 3.605 20 O -0.474 6.474 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.191 0.809 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.867 -22.107 3.109 22.341 hybrid contribution 1.305 0.785 -0.153 1.530 sum 2.172 -21.323 2.956 21.636 Atomic orbital electron populations 1.69981 1.06069 1.26366 1.51205 1.25036 0.94832 0.99237 0.95459 0.86555 0.80139 0.83896 0.77524 1.19740 1.21040 1.21066 1.21332 0.93074 0.91169 1.50088 0.92654 1.19093 0.94040 0.91364 0.97120 1.21557 0.99093 0.93622 1.00225 1.21999 0.98455 0.94661 1.01829 1.21616 0.94190 0.80539 1.02874 1.46958 1.59779 1.24850 1.03805 1.21602 0.96049 0.97373 0.86395 1.22213 0.98860 0.98835 0.99114 1.21505 1.00882 0.94241 0.82632 1.45665 1.58952 1.23101 1.02932 1.60535 1.61333 1.05808 0.94285 1.15624 0.78820 0.81389 0.84633 1.90922 1.60325 1.63510 1.32658 0.93138 0.96663 0.96765 0.93458 0.93227 0.92065 0.92672 0.90689 0.89786 0.89367 0.91861 0.89837 0.88130 0.89232 0.92103 0.80945 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.13 -2.40 5.54 -26.73 -0.15 -2.55 16 12 C 0.13 1.98 5.32 -4.04 -0.02 1.95 16 13 N -0.62 -8.45 2.82 -179.77 -0.51 -8.95 16 14 C 0.11 1.01 6.49 -3.98 -0.03 0.98 16 15 C -0.15 -1.13 6.20 -26.48 -0.16 -1.29 16 16 C 0.13 1.03 6.76 -3.98 -0.03 1.01 16 17 N -0.48 -5.84 3.72 -65.52 -0.24 -6.08 16 18 N -0.59 -6.55 10.26 60.35 0.62 -5.93 16 19 C 0.69 10.88 8.04 -88.07 -0.71 10.17 16 20 O -0.60 -11.64 14.92 5.28 0.08 -11.56 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.01 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 29 H 0.08 1.42 7.29 -51.93 -0.38 1.04 16 30 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.37 4.69 7.46 -181.37 -1.35 3.34 16 37 H 0.33 2.61 9.17 -181.36 -1.66 0.94 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -35.34 304.56 -9.95 -45.29 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.42 Total: -1.72 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.78 Total: -5.74 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.61 Total: -48.05 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.34 -9.95 -45.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395499034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.308 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds