Wall clock time and date at job start Mon Mar 30 2020 04:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99981 * 2 1 4 4 O 1.21583 * 120.00464 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99860 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00129 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47071 * 179.97438 * 6 5 3 8 8 N 1.46897 * 109.46929 * 184.89138 * 7 6 5 9 9 C 1.46906 * 110.99902 * 184.29502 * 8 7 6 10 10 C 1.53005 * 109.46926 * 185.66428 * 9 8 7 11 11 C 1.50692 * 115.55344 * 304.98892 * 10 9 8 12 12 H 1.08003 * 120.00069 * 274.71819 * 11 10 9 13 13 C 1.37880 * 120.00222 * 94.43684 * 11 10 9 14 14 N 1.31512 * 120.00284 * 180.28659 * 13 11 10 15 15 Si 1.86804 * 119.99855 * 0.29468 * 13 11 10 16 16 H 1.48492 * 109.47330 * 94.25236 * 15 13 11 17 17 H 1.48498 * 109.46896 * 214.25685 * 15 13 11 18 18 H 1.48499 * 109.46636 * 334.25391 * 15 13 11 19 19 C 1.53003 * 117.49374 * 90.65711 * 10 9 8 20 20 C 1.53001 * 117.49591 * 159.31329 * 10 9 8 21 21 H 1.08997 * 109.47276 * 300.00507 * 1 2 3 22 22 H 1.09006 * 109.46897 * 60.00146 * 1 2 3 23 23 H 1.08998 * 109.47191 * 179.97438 * 1 2 3 24 24 H 0.97003 * 120.00027 * 179.97438 * 2 1 3 25 25 H 0.97003 * 120.00147 * 359.97438 * 5 3 2 26 26 H 1.08996 * 109.47199 * 59.99578 * 6 5 3 27 27 H 1.09002 * 109.46854 * 299.99594 * 6 5 3 28 28 H 1.08999 * 109.47269 * 64.89426 * 7 6 5 29 29 H 1.08993 * 109.47190 * 304.89181 * 7 6 5 30 30 H 1.00898 * 111.00623 * 308.24794 * 8 7 6 31 31 H 1.08997 * 109.46775 * 65.67231 * 9 8 7 32 32 H 1.08995 * 109.47132 * 305.66669 * 9 8 7 33 33 H 0.96997 * 120.00051 * 180.02562 * 14 13 11 34 34 H 1.09003 * 117.49937 * 214.99394 * 19 10 9 35 35 H 1.08997 * 117.50095 * 0.02979 * 19 10 9 36 36 H 1.09003 * 117.50056 * 359.97438 * 20 10 9 37 37 H 1.09002 * 117.49340 * 144.97379 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.7234 2.1562 -0.0001 8 7 6.4570 3.4233 0.1186 9 6 7.9062 3.2039 0.0196 10 6 8.6406 4.5191 0.2877 11 6 8.2317 5.6807 -0.5808 12 1 8.6857 5.8153 -1.5515 13 6 7.2738 6.5684 -0.1388 14 7 6.9128 7.5789 -0.8991 15 14 6.4887 6.3359 1.5402 16 1 7.2198 7.1484 2.5454 17 1 5.0702 6.7720 1.4881 18 1 6.5521 4.9021 1.9219 19 6 9.0390 4.8237 1.7332 20 6 10.1088 4.4350 0.7098 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.9500 -0.8401 0.0004 25 1 3.9716 0.3271 -0.0005 26 1 3.9562 3.0068 0.8904 27 1 3.9556 3.0080 -0.8895 28 1 6.0009 1.6615 -0.9309 29 1 5.9732 1.5115 0.8425 30 1 6.1440 4.0885 -0.5725 31 1 8.1522 2.8479 -0.9808 32 1 8.2122 2.4603 0.7554 33 1 6.2392 8.2036 -0.5880 34 1 9.0055 5.8643 2.0559 35 1 8.7783 4.0870 2.4930 36 1 10.5515 3.4427 0.7968 37 1 10.7791 5.2197 0.3587 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397426654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:22 Heat of formation + Delta-G solvation = 2.950349 kcal Electronic energy + Delta-G solvation = -17347.309729 eV Core-core repulsion = 14546.790496 eV Total energy + Delta-G solvation = -2800.519232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.92605 -37.49499 -35.82812 -34.57336 -33.61474 -31.98622 -29.04795 -26.55320 -25.48655 -23.94434 -21.88016 -21.48252 -20.94798 -18.84648 -18.58118 -16.53014 -16.12342 -15.91816 -15.16510 -14.83463 -14.57106 -14.37028 -14.08416 -13.63424 -13.26390 -12.96940 -12.44060 -12.41481 -12.22826 -12.02866 -11.31144 -11.16759 -10.97703 -10.51470 -10.27957 -10.22386 -9.87830 -9.39093 -9.38114 -8.95450 -8.86331 -8.53438 -8.42065 -7.49482 -6.00378 -4.08014 2.64532 3.19788 3.50852 3.64646 3.89709 4.15319 4.66644 4.76145 4.96110 5.11788 5.23160 5.30564 5.34685 5.43917 5.60032 5.68969 5.82539 6.09028 6.11644 6.16609 6.23768 6.28624 6.35906 6.49655 6.51769 6.56157 6.79830 6.81469 7.08188 7.18650 7.73696 7.86369 7.94074 8.10094 8.56613 8.56808 8.98801 9.63199 11.09347 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.005393 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.759098 B = 5191.116124 C = 5673.490223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.755 5.755 3 C 0.700 3.300 4 O -0.587 6.587 5 N -0.742 5.742 6 C 0.134 3.866 7 C 0.049 3.951 8 N -0.674 5.674 9 C 0.105 3.895 10 C 0.009 3.991 11 C -0.499 4.499 12 H 0.072 0.928 13 C 0.082 3.918 14 N -0.901 5.901 15 Si 0.871 3.129 16 H -0.298 1.298 17 H -0.303 1.303 18 H -0.208 1.208 19 C -0.194 4.194 20 C -0.187 4.187 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.396 0.604 25 H 0.394 0.606 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.358 0.642 31 H 0.024 0.976 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 -18.015 2.715 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.411 5.411 3 C 0.399 3.601 4 O -0.464 6.464 5 N -0.398 5.398 6 C 0.010 3.990 7 C -0.081 4.081 8 N -0.308 5.308 9 C -0.025 4.025 10 C 0.008 3.992 11 C -0.536 4.536 12 H 0.090 0.910 13 C -0.121 4.121 14 N -0.538 5.538 15 Si 0.699 3.301 16 H -0.225 1.225 17 H -0.231 1.231 18 H -0.130 1.130 19 C -0.231 4.231 20 C -0.225 4.225 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.229 0.771 25 H 0.227 0.773 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.179 0.821 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.550 -16.858 3.363 18.775 hybrid contribution 0.125 -0.836 -0.088 0.849 sum -7.425 -17.693 3.275 19.466 Atomic orbital electron populations 1.21365 0.78313 1.01701 1.02327 1.44917 1.07694 1.07117 1.81359 1.15971 0.81854 0.84229 0.78031 1.90959 1.67839 1.30271 1.57323 1.45052 1.04554 1.10033 1.80152 1.21234 0.90380 0.84088 1.03287 1.22049 0.92067 0.94159 0.99810 1.60522 1.04656 1.08542 1.57048 1.21462 0.86722 0.96695 0.97585 1.19357 0.91781 0.94880 0.93214 1.20242 1.22822 1.07148 1.03403 0.90985 1.25024 0.95481 0.93999 0.97636 1.69920 1.31396 1.14675 1.37771 0.87009 0.76913 0.82258 0.83874 1.22545 1.23077 1.13021 1.22874 1.05786 1.00565 0.93836 1.22898 0.93610 1.00126 1.05882 0.92432 0.92426 0.90846 0.77142 0.77288 0.90552 0.91433 0.95416 0.91313 0.82065 0.95804 0.93421 0.92677 0.89946 0.90858 0.91297 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 10.70 59.85 0.64 1.52 16 2 N -0.75 -7.12 5.72 -72.07 -0.41 -7.53 16 3 C 0.70 9.84 8.57 -86.92 -0.74 9.09 16 4 O -0.59 -11.24 16.34 5.29 0.09 -11.15 16 5 N -0.74 -9.02 5.56 -65.23 -0.36 -9.38 16 6 C 0.13 2.04 5.89 -4.04 -0.02 2.01 16 7 C 0.05 0.72 5.81 -3.83 -0.02 0.70 16 8 N -0.67 -12.87 3.86 -113.78 -0.44 -13.31 16 9 C 0.10 2.03 5.61 -3.82 -0.02 2.01 16 10 C 0.01 0.20 1.37 -155.66 -0.21 -0.01 16 11 C -0.50 -13.64 8.73 -34.44 -0.30 -13.94 16 12 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 13 C 0.08 2.32 5.13 -17.82 -0.09 2.23 16 14 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 15 Si 0.87 22.05 23.18 -169.99 -3.94 18.11 16 16 H -0.30 -7.68 7.08 56.52 0.40 -7.28 16 17 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 18 H -0.21 -4.90 5.17 56.52 0.29 -4.61 16 19 C -0.19 -4.17 7.06 -26.69 -0.19 -4.35 16 20 C -0.19 -3.79 9.96 -26.69 -0.27 -4.06 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.40 2.32 8.84 -40.82 -0.36 1.95 16 25 H 0.39 3.35 8.49 -40.82 -0.35 3.00 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.36 7.63 7.24 -39.29 -0.28 7.35 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.08 1.92 6.32 -51.93 -0.33 1.59 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -33.95 301.68 -7.04 -40.99 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.06 Total: 9.27 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.23 Total: -4.81 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.44 Total: -56.95 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -3.94 Total: 18.11 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.95 -7.04 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397426654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.936 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds