Wall clock time and date at job start Mon Mar 30 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99981 * 2 1 4 4 O 1.21583 * 120.00464 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99860 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00129 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47071 * 179.97438 * 6 5 3 8 8 N 1.46897 * 109.46929 * 184.89138 * 7 6 5 9 9 C 1.46906 * 110.99902 * 184.29502 * 8 7 6 10 10 C 1.53005 * 109.46926 * 185.66428 * 9 8 7 11 11 C 1.50692 * 115.55344 * 304.98892 * 10 9 8 12 12 H 1.08003 * 120.00069 * 274.71819 * 11 10 9 13 13 C 1.37880 * 120.00222 * 94.43684 * 11 10 9 14 14 N 1.31512 * 120.00284 * 180.28659 * 13 11 10 15 15 Si 1.86804 * 119.99855 * 0.29468 * 13 11 10 16 16 H 1.48492 * 109.47330 * 94.25236 * 15 13 11 17 17 H 1.48498 * 109.46896 * 214.25685 * 15 13 11 18 18 H 1.48499 * 109.46636 * 334.25391 * 15 13 11 19 19 C 1.53003 * 117.49374 * 90.65711 * 10 9 8 20 20 C 1.53001 * 117.49591 * 159.31329 * 10 9 8 21 21 H 1.08997 * 109.47276 * 300.00507 * 1 2 3 22 22 H 1.09006 * 109.46897 * 60.00146 * 1 2 3 23 23 H 1.08998 * 109.47191 * 179.97438 * 1 2 3 24 24 H 0.97003 * 120.00027 * 179.97438 * 2 1 3 25 25 H 0.97003 * 120.00147 * 359.97438 * 5 3 2 26 26 H 1.08996 * 109.47199 * 59.99578 * 6 5 3 27 27 H 1.09002 * 109.46854 * 299.99594 * 6 5 3 28 28 H 1.08999 * 109.47269 * 64.89426 * 7 6 5 29 29 H 1.08993 * 109.47190 * 304.89181 * 7 6 5 30 30 H 1.00898 * 111.00623 * 308.24794 * 8 7 6 31 31 H 1.08997 * 109.46775 * 65.67231 * 9 8 7 32 32 H 1.08995 * 109.47132 * 305.66669 * 9 8 7 33 33 H 0.96997 * 120.00051 * 180.02562 * 14 13 11 34 34 H 1.09003 * 117.49937 * 214.99394 * 19 10 9 35 35 H 1.08997 * 117.50095 * 0.02979 * 19 10 9 36 36 H 1.09003 * 117.50056 * 359.97438 * 20 10 9 37 37 H 1.09002 * 117.49340 * 144.97379 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.7234 2.1562 -0.0001 8 7 6.4570 3.4233 0.1186 9 6 7.9062 3.2039 0.0196 10 6 8.6406 4.5191 0.2877 11 6 8.2317 5.6807 -0.5808 12 1 8.6857 5.8153 -1.5515 13 6 7.2738 6.5684 -0.1388 14 7 6.9128 7.5789 -0.8991 15 14 6.4887 6.3359 1.5402 16 1 7.2198 7.1484 2.5454 17 1 5.0702 6.7720 1.4881 18 1 6.5521 4.9021 1.9219 19 6 9.0390 4.8237 1.7332 20 6 10.1088 4.4350 0.7098 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.9500 -0.8401 0.0004 25 1 3.9716 0.3271 -0.0005 26 1 3.9562 3.0068 0.8904 27 1 3.9556 3.0080 -0.8895 28 1 6.0009 1.6615 -0.9309 29 1 5.9732 1.5115 0.8425 30 1 6.1440 4.0885 -0.5725 31 1 8.1522 2.8479 -0.9808 32 1 8.2122 2.4603 0.7554 33 1 6.2392 8.2036 -0.5880 34 1 9.0055 5.8643 2.0559 35 1 8.7783 4.0870 2.4930 36 1 10.5515 3.4427 0.7968 37 1 10.7791 5.2197 0.3587 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397426654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:21 Heat of formation + Delta-G solvation = -25.376499 kcal Electronic energy + Delta-G solvation = -17348.538073 eV Core-core repulsion = 14546.790496 eV Total energy + Delta-G solvation = -2801.747577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00520 -39.11323 -37.10340 -35.58244 -34.89861 -34.16186 -30.26077 -27.87206 -27.14713 -25.35263 -23.29385 -22.92307 -22.00078 -20.67877 -19.60800 -18.26460 -17.44485 -17.07687 -16.67961 -16.36753 -15.79645 -15.64842 -15.36993 -14.97412 -14.76823 -14.48583 -14.02675 -13.71565 -13.58835 -13.03380 -12.99181 -12.65448 -12.41725 -12.37278 -11.96668 -11.70131 -11.50813 -11.31476 -10.87439 -10.55822 -10.45892 -10.19995 -9.80766 -8.98509 -8.23073 -6.31701 1.44735 1.56926 1.69689 1.85798 2.10650 2.54232 3.10910 3.17013 3.39576 3.76727 3.95435 4.15317 4.25816 4.45576 4.46558 4.53807 4.61097 4.65647 4.82356 4.85753 4.93027 4.95395 4.99021 5.03166 5.16767 5.38516 5.44603 5.48438 5.55734 5.81195 5.99586 6.31786 6.38304 6.51081 6.80470 7.10819 7.42457 7.56438 8.90449 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.005393 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.759098 B = 5191.116124 C = 5673.490223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.735 5.735 3 C 0.691 3.309 4 O -0.645 6.645 5 N -0.726 5.726 6 C 0.143 3.857 7 C 0.060 3.940 8 N -0.694 5.694 9 C 0.114 3.886 10 C -0.019 4.019 11 C -0.489 4.489 12 H 0.027 0.973 13 C 0.034 3.966 14 N -0.953 5.953 15 Si 0.929 3.071 16 H -0.304 1.304 17 H -0.323 1.323 18 H -0.173 1.173 19 C -0.193 4.193 20 C -0.168 4.168 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.118 0.882 24 H 0.417 0.583 25 H 0.416 0.584 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.340 0.660 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.261 0.739 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 -21.990 4.288 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.392 5.392 3 C 0.390 3.610 4 O -0.527 6.527 5 N -0.383 5.383 6 C 0.017 3.983 7 C -0.070 4.070 8 N -0.326 5.326 9 C -0.015 4.015 10 C -0.021 4.021 11 C -0.526 4.526 12 H 0.046 0.954 13 C -0.164 4.164 14 N -0.593 5.593 15 Si 0.756 3.244 16 H -0.233 1.233 17 H -0.253 1.253 18 H -0.093 1.093 19 C -0.230 4.230 20 C -0.206 4.206 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.136 0.864 24 H 0.254 0.746 25 H 0.253 0.747 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.158 0.842 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.995 -20.957 4.947 22.640 hybrid contribution 0.011 0.365 -0.670 0.763 sum -6.985 -20.591 4.277 22.161 Atomic orbital electron populations 1.21543 0.77360 1.04203 1.01029 1.44786 1.08257 1.06581 1.79538 1.16298 0.82247 0.84626 0.77802 1.90924 1.69063 1.32753 1.59934 1.44728 1.04036 1.10020 1.79499 1.20948 0.91396 0.84991 1.00976 1.22036 0.90528 0.92519 1.01887 1.60490 1.05031 1.10431 1.56622 1.21358 0.86353 0.95083 0.98746 1.19394 0.94400 0.94841 0.93424 1.20458 1.21359 1.08562 1.02271 0.95429 1.25721 0.96262 0.93761 1.00641 1.70059 1.32965 1.16417 1.39885 0.86180 0.74455 0.83750 0.79968 1.23270 1.25289 1.09346 1.22893 1.06167 1.00175 0.93719 1.22941 0.92118 1.01817 1.03744 0.93755 0.93824 0.86372 0.74632 0.74722 0.93055 0.93869 0.93479 0.88599 0.84187 0.95654 0.90011 0.93083 0.92278 0.87857 0.87200 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.48 10.70 127.77 1.37 2.85 16 2 N -0.73 -12.06 5.72 -500.20 -2.86 -14.92 16 3 C 0.69 18.60 8.57 179.06 1.53 20.13 16 4 O -0.64 -25.06 16.34 -3.98 -0.07 -25.13 16 5 N -0.73 -16.05 5.56 -478.54 -2.66 -18.71 16 6 C 0.14 4.15 5.89 86.38 0.51 4.66 16 7 C 0.06 1.54 5.81 86.30 0.50 2.04 16 8 N -0.69 -24.82 3.86 -513.89 -1.99 -26.81 16 9 C 0.11 3.99 5.61 86.30 0.48 4.47 16 10 C -0.02 -0.84 1.37 -52.93 -0.07 -0.91 16 11 C -0.49 -27.20 8.73 25.60 0.22 -26.98 16 12 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 13 C 0.03 1.97 5.13 84.66 0.43 2.40 16 14 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 15 Si 0.93 46.43 23.18 68.60 1.59 48.02 16 16 H -0.30 -15.40 7.08 99.48 0.70 -14.70 16 17 H -0.32 -17.17 7.11 99.48 0.71 -16.46 16 18 H -0.17 -7.60 5.17 99.48 0.51 -7.09 16 19 C -0.19 -7.65 7.06 30.62 0.22 -7.44 16 20 C -0.17 -6.27 9.96 30.62 0.30 -5.96 16 21 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.04 0.76 8.14 -2.38 -0.02 0.75 16 23 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.42 3.32 8.84 -92.71 -0.82 2.50 16 25 H 0.42 5.49 8.49 -92.71 -0.79 4.71 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.34 14.35 7.24 -89.70 -0.65 13.71 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 33 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 34 H 0.06 2.63 6.32 -2.39 -0.02 2.62 16 35 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -78.05 301.68 -1.55 -79.60 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -1.37 Total: 23.24 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.50 Total: -4.73 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -7.21 Total: -121.00 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.07 Total: -25.13 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.59 Total: 48.02 kcal Total: -78.05 -1.55 -79.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397426654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.222 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds