Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99865 * 2 1 4 4 O 1.20821 * 120.00419 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99614 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46867 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46912 * 179.97438 * 6 5 3 8 8 N 1.46903 * 109.46823 * 179.97438 * 7 6 5 9 9 C 1.48556 * 111.00051 * 290.12519 * 8 7 6 10 10 C 1.54375 * 104.59344 * 200.95769 * 9 8 7 11 11 C 1.54262 * 105.06151 * 23.85777 * 10 9 8 12 12 H 1.09002 * 110.32521 * 241.10068 * 11 10 9 13 13 C 1.50697 * 110.32461 * 118.99469 * 11 10 9 14 14 H 1.08004 * 120.00044 * 242.83277 * 13 11 10 15 15 C 1.37877 * 120.00208 * 62.82633 * 13 11 10 16 16 N 1.31513 * 119.99995 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00107 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47212 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46771 * 120.00347 * 17 15 13 20 20 H 1.48497 * 109.47491 * 240.00451 * 17 15 13 21 21 C 1.48821 * 110.96694 * 174.70681 * 8 7 6 22 22 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47302 * 300.00658 * 1 2 3 24 24 H 1.09007 * 109.46799 * 60.00301 * 1 2 3 25 25 H 1.09000 * 109.47647 * 59.99375 * 5 3 2 26 26 H 1.09009 * 109.47415 * 299.99298 * 5 3 2 27 27 H 1.08997 * 109.47358 * 60.00143 * 6 5 3 28 28 H 1.08999 * 109.46830 * 299.99378 * 6 5 3 29 29 H 1.09001 * 109.47116 * 60.00284 * 7 6 5 30 30 H 1.08996 * 109.47210 * 300.00080 * 7 6 5 31 31 H 1.09009 * 110.40917 * 82.18820 * 9 8 7 32 32 H 1.08993 * 110.51593 * 319.79256 * 9 8 7 33 33 H 1.08997 * 110.33138 * 264.96030 * 10 9 8 34 34 H 1.09002 * 110.32486 * 142.75497 * 10 9 8 35 35 H 0.97003 * 120.00446 * 179.97438 * 16 15 13 36 36 H 1.09001 * 110.45345 * 40.32853 * 21 8 7 37 37 H 1.09001 * 110.49959 * 277.79615 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5281 2.8221 -0.0011 8 7 5.9446 4.2309 -0.0022 9 6 5.6380 4.8756 -1.3049 10 6 6.5731 6.1027 -1.3612 11 6 7.7454 5.7568 -0.4200 12 1 7.8001 6.4765 0.3968 13 6 9.0430 5.7361 -1.1860 14 1 9.6093 4.8198 -1.2643 15 6 9.5073 6.8869 -1.7870 16 7 8.8179 8.0028 -1.6914 17 14 11.1161 6.8613 -2.7358 18 1 11.6940 5.4940 -2.6937 19 1 10.8645 7.2487 -4.1473 20 1 12.0685 7.8208 -2.1214 21 6 7.4225 4.3493 0.1260 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9557 0.7808 -0.8907 26 1 3.9564 0.7806 0.8893 27 1 3.6108 3.2364 0.8889 28 1 3.6101 3.2359 -0.8911 29 1 5.9178 2.3277 -0.8909 30 1 5.9177 2.3283 0.8891 31 1 4.5950 5.1909 -1.3369 32 1 5.8540 4.1949 -2.1283 33 1 6.0525 6.9921 -1.0064 34 1 6.9361 6.2558 -2.3776 35 1 9.1447 8.8125 -2.1139 36 1 7.9192 3.5860 -0.4729 37 1 7.7227 4.2690 1.1708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397833394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = -96.764965 kcal Electronic energy + Delta-G solvation = -17121.454924 eV Core-core repulsion = 14284.318960 eV Total energy + Delta-G solvation = -2837.135964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59228 -38.13748 -36.74389 -34.45499 -32.61932 -30.24487 -28.17370 -28.10754 -26.02134 -24.00814 -22.12635 -20.67414 -20.01872 -19.19303 -17.69155 -16.84252 -16.71565 -16.16697 -15.28732 -14.88224 -14.56482 -14.18506 -13.68807 -13.46839 -13.12860 -12.54688 -12.40871 -12.25636 -11.86340 -11.68514 -11.31087 -11.04523 -11.02171 -10.81620 -10.67373 -10.62720 -10.48079 -10.28348 -10.18850 -9.71007 -9.23986 -8.69762 -8.36890 -7.78809 -6.00148 -4.04070 2.07554 2.54286 3.29609 3.37828 3.41156 4.41850 4.58221 4.59600 4.85578 4.89030 4.95874 5.13282 5.22386 5.32593 5.42655 5.47029 5.60341 5.84451 5.89999 6.07784 6.19388 6.24749 6.32392 6.39496 6.46831 6.58602 6.90824 7.14743 7.22716 7.57318 7.60550 7.71312 7.76342 7.91519 8.02602 8.48291 8.99426 9.59933 11.09164 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.064881 B = 0.003749 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.456757 B = 7466.007699 C = 7589.832112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.112 4.112 6 C -0.104 4.104 7 C 0.046 3.954 8 N -0.516 5.516 9 C 0.031 3.969 10 C -0.093 4.093 11 C 0.047 3.953 12 H 0.034 0.966 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.886 5.886 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.040 3.960 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.259 0.741 36 H 0.035 0.965 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.227 -14.834 2.493 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.391 6.391 5 C -0.150 4.150 6 C -0.142 4.142 7 C -0.083 4.083 8 N -0.240 5.240 9 C -0.097 4.097 10 C -0.131 4.131 11 C 0.028 3.972 12 H 0.052 0.948 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.525 5.525 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.087 4.087 22 H 0.118 0.882 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.739 -14.094 2.889 19.217 hybrid contribution 1.016 -0.352 -1.270 1.664 sum -11.723 -14.446 1.619 18.674 Atomic orbital electron populations 1.23241 0.76575 1.03503 1.02574 1.86516 1.23335 1.33906 1.84363 1.23986 0.92472 0.81144 0.72175 1.90690 1.67279 1.36304 1.44800 1.21435 0.86800 1.00954 1.05794 1.21405 0.95951 0.92434 1.04393 1.22187 0.94162 0.91544 1.00456 1.65427 1.14923 1.11951 1.31705 1.23206 0.99609 0.97558 0.89296 1.22209 0.95373 0.93849 1.01702 1.19375 0.93363 0.89934 0.94519 0.94800 1.21241 1.05785 0.95562 1.32815 0.92703 1.24978 0.97028 0.95578 0.96434 1.69999 1.38242 1.00043 1.44172 0.86587 0.83962 0.78011 0.79730 1.19843 1.21090 1.21022 1.23332 0.85359 1.00475 0.99519 0.88240 0.91936 0.91938 0.87740 0.87574 0.90298 0.91045 0.94992 0.91247 0.92037 0.95105 0.93618 0.91646 0.93089 0.94684 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.79 10.57 -39.27 -0.41 -4.20 16 3 C 0.46 5.48 7.96 36.01 0.29 5.76 16 4 O -0.50 -7.63 15.73 -18.75 -0.29 -7.93 16 5 C -0.11 -1.12 5.81 -27.88 -0.16 -1.28 16 6 C -0.10 -1.37 4.56 -26.73 -0.12 -1.50 16 7 C 0.05 0.68 4.81 -3.82 -0.02 0.66 16 8 N -0.52 -9.87 5.38 -229.74 -1.24 -11.10 16 9 C 0.03 0.62 5.74 -2.19 -0.01 0.61 16 10 C -0.09 -2.22 5.80 -25.35 -0.15 -2.37 16 11 C 0.05 1.19 2.96 -90.39 -0.27 0.93 16 12 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.52 -14.14 8.35 -34.44 -0.29 -14.42 16 14 H 0.05 1.48 7.57 -52.48 -0.40 1.09 16 15 C 0.06 1.71 5.11 -17.82 -0.09 1.62 16 16 N -0.89 -25.61 12.47 55.43 0.69 -24.92 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.04 0.85 6.03 -2.03 -0.01 0.84 16 22 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 24 H 0.06 0.49 8.13 -51.92 -0.42 0.06 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 28 H 0.07 1.04 7.21 -51.93 -0.37 0.67 16 29 H 0.03 0.47 7.88 -51.93 -0.41 0.06 16 30 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 31 H 0.06 1.15 7.76 -51.92 -0.40 0.75 16 32 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 33 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.70 7.33 -51.93 -0.38 1.32 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.03 0.74 7.56 -51.93 -0.39 0.35 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -30.83 305.49 -7.56 -38.39 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.12 Total: -3.24 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 0.23 Total: -7.81 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.54 Total: -36.02 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.71 Total: -12.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.83 -7.56 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397833394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.373 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds