Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99865 * 2 1 4 4 O 1.20821 * 120.00419 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99614 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46867 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46912 * 179.97438 * 6 5 3 8 8 N 1.46903 * 109.46823 * 179.97438 * 7 6 5 9 9 C 1.48556 * 111.00051 * 290.12519 * 8 7 6 10 10 C 1.54375 * 104.59344 * 200.95769 * 9 8 7 11 11 C 1.54262 * 105.06151 * 23.85777 * 10 9 8 12 12 H 1.09002 * 110.32521 * 241.10068 * 11 10 9 13 13 C 1.50697 * 110.32461 * 118.99469 * 11 10 9 14 14 H 1.08004 * 120.00044 * 242.83277 * 13 11 10 15 15 C 1.37877 * 120.00208 * 62.82633 * 13 11 10 16 16 N 1.31513 * 119.99995 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00107 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47212 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46771 * 120.00347 * 17 15 13 20 20 H 1.48497 * 109.47491 * 240.00451 * 17 15 13 21 21 C 1.48821 * 110.96694 * 174.70681 * 8 7 6 22 22 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47302 * 300.00658 * 1 2 3 24 24 H 1.09007 * 109.46799 * 60.00301 * 1 2 3 25 25 H 1.09000 * 109.47647 * 59.99375 * 5 3 2 26 26 H 1.09009 * 109.47415 * 299.99298 * 5 3 2 27 27 H 1.08997 * 109.47358 * 60.00143 * 6 5 3 28 28 H 1.08999 * 109.46830 * 299.99378 * 6 5 3 29 29 H 1.09001 * 109.47116 * 60.00284 * 7 6 5 30 30 H 1.08996 * 109.47210 * 300.00080 * 7 6 5 31 31 H 1.09009 * 110.40917 * 82.18820 * 9 8 7 32 32 H 1.08993 * 110.51593 * 319.79256 * 9 8 7 33 33 H 1.08997 * 110.33138 * 264.96030 * 10 9 8 34 34 H 1.09002 * 110.32486 * 142.75497 * 10 9 8 35 35 H 0.97003 * 120.00446 * 179.97438 * 16 15 13 36 36 H 1.09001 * 110.45345 * 40.32853 * 21 8 7 37 37 H 1.09001 * 110.49959 * 277.79615 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5281 2.8221 -0.0011 8 7 5.9446 4.2309 -0.0022 9 6 5.6380 4.8756 -1.3049 10 6 6.5731 6.1027 -1.3612 11 6 7.7454 5.7568 -0.4200 12 1 7.8001 6.4765 0.3968 13 6 9.0430 5.7361 -1.1860 14 1 9.6093 4.8198 -1.2643 15 6 9.5073 6.8869 -1.7870 16 7 8.8179 8.0028 -1.6914 17 14 11.1161 6.8613 -2.7358 18 1 11.6940 5.4940 -2.6937 19 1 10.8645 7.2487 -4.1473 20 1 12.0685 7.8208 -2.1214 21 6 7.4225 4.3493 0.1260 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9557 0.7808 -0.8907 26 1 3.9564 0.7806 0.8893 27 1 3.6108 3.2364 0.8889 28 1 3.6101 3.2359 -0.8911 29 1 5.9178 2.3277 -0.8909 30 1 5.9177 2.3283 0.8891 31 1 4.5950 5.1909 -1.3369 32 1 5.8540 4.1949 -2.1283 33 1 6.0525 6.9921 -1.0064 34 1 6.9361 6.2558 -2.3776 35 1 9.1447 8.8125 -2.1139 36 1 7.9192 3.5860 -0.4729 37 1 7.7227 4.2690 1.1708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397833394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = -116.635297 kcal Electronic energy + Delta-G solvation = -17122.316567 eV Core-core repulsion = 14284.318960 eV Total energy + Delta-G solvation = -2837.997606 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.48212 -39.73581 -37.65055 -35.87923 -34.35834 -31.80044 -29.90663 -29.07635 -27.28401 -25.80717 -23.37974 -21.72788 -21.54686 -20.95950 -18.64884 -18.24771 -17.69506 -17.54085 -16.69629 -16.62186 -15.99377 -15.68228 -14.87274 -14.53808 -14.37830 -14.16085 -13.75921 -13.35090 -13.18073 -12.97383 -12.85100 -12.68482 -12.51362 -12.29167 -12.09957 -11.99555 -11.81052 -11.68917 -11.54139 -11.51240 -11.11973 -10.76677 -10.48450 -9.30449 -8.12535 -6.23743 1.19024 1.40994 1.42586 1.54082 1.77780 2.43098 3.18473 3.22672 3.75741 3.95675 4.09564 4.14706 4.30254 4.32002 4.34305 4.47885 4.56430 4.59179 4.64736 4.70992 4.73197 4.78638 4.89591 5.05792 5.14536 5.28490 5.29656 5.36216 5.43509 5.62072 5.77498 5.88516 5.99075 6.32745 6.41930 6.74046 6.88305 7.44288 8.96896 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.064881 B = 0.003749 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.456757 B = 7466.007699 C = 7589.832112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.545 6.545 5 C -0.104 4.104 6 C -0.096 4.096 7 C 0.046 3.954 8 N -0.525 5.525 9 C 0.044 3.956 10 C -0.087 4.087 11 C 0.036 3.964 12 H -0.004 1.004 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.010 3.990 16 N -0.920 5.920 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.053 3.947 22 H 0.132 0.868 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.260 0.740 36 H 0.039 0.961 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 -17.388 2.330 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.435 6.435 5 C -0.141 4.141 6 C -0.134 4.134 7 C -0.082 4.082 8 N -0.249 5.249 9 C -0.084 4.084 10 C -0.126 4.126 11 C 0.017 3.983 12 H 0.015 0.985 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.189 4.189 16 N -0.559 5.559 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.074 4.074 22 H 0.150 0.850 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.617 -16.689 2.732 21.099 hybrid contribution 0.911 0.427 -1.182 1.552 sum -11.706 -16.262 1.550 20.097 Atomic orbital electron populations 1.23519 0.75153 1.05620 1.02302 1.86507 1.24770 1.32946 1.83809 1.24341 0.93179 0.80937 0.70977 1.90682 1.68277 1.37640 1.46904 1.21410 0.85587 0.98885 1.08252 1.21245 0.94629 0.94646 1.02865 1.22297 0.95131 0.88807 1.01984 1.65388 1.13285 1.15186 1.31003 1.23037 0.99125 0.95889 0.90310 1.22010 0.95770 0.95201 0.99588 1.19364 0.93465 0.91833 0.93595 0.98538 1.21576 1.06651 0.95718 1.32916 0.92484 1.25805 1.00459 0.95225 0.97430 1.70131 1.39976 1.00653 1.45145 0.85524 0.79699 0.78360 0.78179 1.18771 1.20736 1.20740 1.23089 0.86918 0.97636 0.99794 0.84951 0.92202 0.92320 0.85392 0.84802 0.91833 0.92728 0.93878 0.89133 0.90751 0.94120 0.95540 0.94295 0.93087 0.94302 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.72 10.57 -51.45 -0.54 -7.27 16 3 C 0.46 10.11 7.96 71.24 0.57 10.68 16 4 O -0.54 -16.16 15.73 21.98 0.35 -15.81 16 5 C -0.10 -1.74 5.81 29.85 0.17 -1.57 16 6 C -0.10 -2.33 4.56 30.60 0.14 -2.19 16 7 C 0.05 1.23 4.81 86.31 0.42 1.64 16 8 N -0.52 -19.31 5.38 -880.75 -4.73 -24.04 16 9 C 0.04 1.74 5.74 86.45 0.50 2.23 16 10 C -0.09 -4.28 5.80 31.49 0.18 -4.10 16 11 C 0.04 1.89 2.96 -10.64 -0.03 1.86 16 12 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 13 C -0.53 -29.35 8.35 25.60 0.21 -29.13 16 14 H 0.06 3.06 7.57 -2.91 -0.02 3.04 16 15 C 0.01 0.54 5.11 84.65 0.43 0.97 16 16 N -0.92 -54.50 12.47 21.45 0.27 -54.23 16 17 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 C 0.05 2.20 6.03 86.40 0.52 2.72 16 22 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 24 H 0.06 0.84 8.13 -2.38 -0.02 0.83 16 25 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 28 H 0.05 1.51 7.21 -2.39 -0.02 1.49 16 29 H 0.04 1.09 7.88 -2.39 -0.02 1.08 16 30 H 0.09 2.08 8.13 -2.39 -0.02 2.06 16 31 H 0.07 2.73 7.76 -2.38 -0.02 2.71 16 32 H 0.04 1.51 7.82 -2.39 -0.02 1.50 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 2.07 7.33 -2.39 -0.02 2.06 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.04 1.57 7.56 -2.39 -0.02 1.56 16 37 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -67.76 305.49 2.69 -65.07 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.03 Total: 5.87 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.31 Total: -15.32 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -4.47 Total: -78.27 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.20 Total: -23.08 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.76 2.69 -65.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397833394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.565 kcal (2) G-P(sol) polarization free energy of solvation -67.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds