Wall clock time and date at job start Mon Mar 30 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99808 * 2 1 4 4 O 1.20826 * 120.00472 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47410 * 174.40474 * 5 3 2 7 7 N 1.46896 * 110.01647 * 305.40488 * 6 5 3 8 8 C 1.46896 * 111.00327 * 303.41819 * 7 6 5 9 9 C 1.50697 * 109.47490 * 176.24150 * 8 7 6 10 10 H 1.08005 * 119.99945 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00012 * 179.72783 * 9 8 7 12 12 N 1.31514 * 120.00058 * 0.27383 * 11 9 8 13 13 Si 1.86802 * 119.99890 * 180.27795 * 11 9 8 14 14 H 1.48496 * 109.47039 * 59.99404 * 13 11 9 15 15 H 1.48497 * 109.46979 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47007 * 299.99398 * 13 11 9 17 17 C 1.53877 * 110.03058 * 66.79369 * 6 5 3 18 18 C 1.54376 * 106.54264 * 119.34699 * 17 6 5 19 19 C 1.54892 * 104.21458 * 23.57791 * 18 17 6 20 20 C 1.54265 * 110.03304 * 184.01265 * 6 5 3 21 21 H 1.09003 * 109.46672 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47120 * 299.99907 * 1 2 3 23 23 H 1.08999 * 109.47353 * 60.00058 * 1 2 3 24 24 H 1.08999 * 109.47528 * 54.40730 * 5 3 2 25 25 H 1.09003 * 109.47188 * 294.40316 * 5 3 2 26 26 H 1.00906 * 111.00101 * 179.46245 * 7 6 5 27 27 H 1.09001 * 109.46924 * 56.24030 * 8 7 6 28 28 H 1.08997 * 109.46854 * 296.24661 * 8 7 6 29 29 H 0.96995 * 119.99865 * 180.02562 * 12 11 9 30 30 H 1.08994 * 110.03436 * 238.61837 * 17 6 5 31 31 H 1.08996 * 110.03071 * 0.05458 * 17 6 5 32 32 H 1.08994 * 110.46520 * 264.89409 * 18 17 6 33 33 H 1.08998 * 110.49109 * 142.26707 * 18 17 6 34 34 H 1.08999 * 110.75201 * 203.75849 * 19 18 17 35 35 H 1.08999 * 110.75473 * 80.39168 * 19 18 17 36 36 H 1.08999 * 110.49129 * 335.73356 * 20 6 5 37 37 H 1.08996 * 110.48404 * 98.38348 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0005 2.7352 -0.1402 7 7 3.3827 3.3308 -1.3324 8 6 3.7156 2.5609 -2.5383 9 6 2.9917 3.1458 -3.7236 10 1 2.3489 4.0040 -3.5941 11 6 3.1548 2.5891 -4.9744 12 7 3.9379 1.5443 -5.1322 13 14 2.2636 3.3189 -6.4450 14 1 2.6802 4.7329 -6.6244 15 1 2.6049 2.5442 -7.6650 16 1 0.7978 3.2601 -6.2146 17 6 3.5965 3.5286 1.1149 18 6 4.9037 4.0710 1.7317 19 6 5.8982 4.1065 0.5447 20 6 5.5373 2.8221 -0.2421 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 3.9608 0.6965 -0.8348 25 1 3.9510 0.8701 0.9367 26 1 3.6525 4.2977 -1.4348 27 1 3.4110 1.5232 -2.4024 28 1 4.7908 2.6042 -2.7116 29 1 4.0529 1.1530 -6.0122 30 1 2.9421 4.3555 0.8394 31 1 3.0920 2.8730 1.8246 32 1 5.2641 3.4002 2.5115 33 1 4.7500 5.0736 2.1307 34 1 6.9272 4.0646 0.9016 35 1 5.7366 4.9933 -0.0682 36 1 6.0002 1.9496 0.2190 37 1 5.8460 2.9134 -1.2835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411658624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:43 Heat of formation + Delta-G solvation = -92.703389 kcal Electronic energy + Delta-G solvation = -18406.582493 eV Core-core repulsion = 15569.622653 eV Total energy + Delta-G solvation = -2836.959841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11138 -38.46104 -35.68533 -33.90788 -32.15938 -30.25431 -28.33455 -27.57698 -26.30770 -24.63745 -21.91306 -20.78639 -20.13550 -18.32643 -16.91881 -16.62095 -15.92744 -15.76934 -15.24956 -14.91569 -14.52265 -13.73600 -13.32938 -13.12324 -12.95672 -12.64294 -12.16946 -11.74333 -11.60614 -11.42218 -11.17106 -10.97336 -10.80866 -10.79386 -10.63008 -10.50799 -10.28174 -10.22789 -10.11568 -9.66973 -9.65299 -9.14084 -8.41790 -7.11073 -5.99556 -3.99849 2.96049 3.27583 3.35751 3.39064 3.43193 4.46250 4.86223 4.91750 5.05053 5.34596 5.36013 5.40866 5.42748 5.50616 5.57030 5.67909 5.78072 5.84037 5.92880 5.94942 6.00697 6.15705 6.17997 6.27374 6.39518 6.49042 6.65007 6.75518 6.98662 7.29269 7.46157 7.85921 8.18974 8.44963 8.53122 8.69171 9.09368 9.64377 11.11304 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.008877 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.251624 B = 3153.517191 C = 4192.589031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.373 6.373 3 C 0.461 3.539 4 O -0.468 6.468 5 C -0.098 4.098 6 C 0.127 3.873 7 N -0.663 5.663 8 C 0.190 3.810 9 C -0.508 4.508 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.104 4.104 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.158 4.158 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.331 0.669 27 H 0.025 0.975 28 H -0.010 1.010 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -0.816 12.944 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.291 6.291 3 C 0.302 3.698 4 O -0.351 6.351 5 C -0.136 4.136 6 C 0.034 3.966 7 N -0.293 5.293 8 C 0.063 3.937 9 C -0.547 4.547 10 H 0.079 0.921 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.142 4.142 18 C -0.165 4.165 19 C -0.159 4.159 20 C -0.197 4.197 21 H 0.110 0.890 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.148 0.852 27 H 0.043 0.957 28 H 0.008 0.992 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.192 -0.943 12.882 12.918 hybrid contribution 0.294 0.463 -1.146 1.271 sum 0.103 -0.480 11.736 11.746 Atomic orbital electron populations 1.23095 0.77422 1.02706 1.02243 1.86484 1.22694 1.34743 1.85200 1.23463 0.91892 0.81128 0.73293 1.90664 1.66439 1.35626 1.42400 1.21579 0.88347 0.99278 1.04435 1.21279 0.90602 0.91474 0.93258 1.60853 1.60579 1.05564 1.02340 1.19634 0.94144 0.93950 0.85963 1.21150 1.27132 1.14616 0.91774 0.92127 1.24967 0.95543 0.95152 0.98931 1.69942 1.38138 1.22465 1.23371 0.86579 0.80195 0.79035 0.81691 1.20312 1.21394 1.20284 1.22206 0.96438 1.00162 0.95378 1.22436 0.96103 1.00408 0.97529 1.22427 0.98330 0.98268 0.96827 1.23179 0.97293 0.97698 1.01572 0.88987 0.92640 0.91870 0.87663 0.88748 0.85189 0.95707 0.99221 0.92976 0.90452 0.92498 0.92217 0.92147 0.92137 0.91580 0.91858 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.63 16 2 O -0.37 -6.55 10.57 -39.25 -0.41 -6.96 16 3 C 0.46 8.81 7.08 36.00 0.25 9.07 16 4 O -0.47 -10.02 13.84 -18.75 -0.26 -10.28 16 5 C -0.10 -1.68 3.98 -27.88 -0.11 -1.79 16 6 C 0.13 2.21 0.39 -130.48 -0.05 2.15 16 7 N -0.66 -14.37 4.57 -100.09 -0.46 -14.83 16 8 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 9 C -0.51 -14.63 9.35 -34.44 -0.32 -14.95 16 10 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C -0.10 -1.60 5.02 -25.55 -0.13 -1.73 16 18 C -0.13 -1.60 6.83 -25.01 -0.17 -1.77 16 19 C -0.12 -1.62 6.91 -24.74 -0.17 -1.79 16 20 C -0.16 -2.48 5.83 -25.07 -0.15 -2.63 16 21 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 23 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 24 H 0.11 1.94 6.64 -51.93 -0.34 1.60 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.33 7.00 8.77 -39.29 -0.34 6.66 16 27 H 0.02 0.69 6.04 -51.93 -0.31 0.38 16 28 H -0.01 -0.26 6.34 -51.93 -0.33 -0.59 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 31 H 0.06 0.85 7.27 -51.93 -0.38 0.48 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.89 7.86 -51.93 -0.41 0.48 16 37 H 0.08 1.44 6.07 -51.93 -0.32 1.13 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -31.77 297.38 -6.60 -38.38 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.77 Total: 3.65 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 0.10 Total: -5.45 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.28 Total: -40.98 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.67 Total: -17.24 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.77 -6.60 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411658624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.328 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds