Wall clock time and date at job start Mon Mar 30 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99808 * 2 1 4 4 O 1.20826 * 120.00472 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47410 * 174.40474 * 5 3 2 7 7 N 1.46896 * 110.01647 * 305.40488 * 6 5 3 8 8 C 1.46896 * 111.00327 * 303.41819 * 7 6 5 9 9 C 1.50697 * 109.47490 * 176.24150 * 8 7 6 10 10 H 1.08005 * 119.99945 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00012 * 179.72783 * 9 8 7 12 12 N 1.31514 * 120.00058 * 0.27383 * 11 9 8 13 13 Si 1.86802 * 119.99890 * 180.27795 * 11 9 8 14 14 H 1.48496 * 109.47039 * 59.99404 * 13 11 9 15 15 H 1.48497 * 109.46979 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47007 * 299.99398 * 13 11 9 17 17 C 1.53877 * 110.03058 * 66.79369 * 6 5 3 18 18 C 1.54376 * 106.54264 * 119.34699 * 17 6 5 19 19 C 1.54892 * 104.21458 * 23.57791 * 18 17 6 20 20 C 1.54265 * 110.03304 * 184.01265 * 6 5 3 21 21 H 1.09003 * 109.46672 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47120 * 299.99907 * 1 2 3 23 23 H 1.08999 * 109.47353 * 60.00058 * 1 2 3 24 24 H 1.08999 * 109.47528 * 54.40730 * 5 3 2 25 25 H 1.09003 * 109.47188 * 294.40316 * 5 3 2 26 26 H 1.00906 * 111.00101 * 179.46245 * 7 6 5 27 27 H 1.09001 * 109.46924 * 56.24030 * 8 7 6 28 28 H 1.08997 * 109.46854 * 296.24661 * 8 7 6 29 29 H 0.96995 * 119.99865 * 180.02562 * 12 11 9 30 30 H 1.08994 * 110.03436 * 238.61837 * 17 6 5 31 31 H 1.08996 * 110.03071 * 0.05458 * 17 6 5 32 32 H 1.08994 * 110.46520 * 264.89409 * 18 17 6 33 33 H 1.08998 * 110.49109 * 142.26707 * 18 17 6 34 34 H 1.08999 * 110.75201 * 203.75849 * 19 18 17 35 35 H 1.08999 * 110.75473 * 80.39168 * 19 18 17 36 36 H 1.08999 * 110.49129 * 335.73356 * 20 6 5 37 37 H 1.08996 * 110.48404 * 98.38348 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0005 2.7352 -0.1402 7 7 3.3827 3.3308 -1.3324 8 6 3.7156 2.5609 -2.5383 9 6 2.9917 3.1458 -3.7236 10 1 2.3489 4.0040 -3.5941 11 6 3.1548 2.5891 -4.9744 12 7 3.9379 1.5443 -5.1322 13 14 2.2636 3.3189 -6.4450 14 1 2.6802 4.7329 -6.6244 15 1 2.6049 2.5442 -7.6650 16 1 0.7978 3.2601 -6.2146 17 6 3.5965 3.5286 1.1149 18 6 4.9037 4.0710 1.7317 19 6 5.8982 4.1065 0.5447 20 6 5.5373 2.8221 -0.2421 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 3.9608 0.6965 -0.8348 25 1 3.9510 0.8701 0.9367 26 1 3.6525 4.2977 -1.4348 27 1 3.4110 1.5232 -2.4024 28 1 4.7908 2.6042 -2.7116 29 1 4.0529 1.1530 -6.0122 30 1 2.9421 4.3555 0.8394 31 1 3.0920 2.8730 1.8246 32 1 5.2641 3.4002 2.5115 33 1 4.7500 5.0736 2.1307 34 1 6.9272 4.0646 0.9016 35 1 5.7366 4.9933 -0.0682 36 1 6.0002 1.9496 0.2190 37 1 5.8460 2.9134 -1.2835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411658624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:43 Heat of formation + Delta-G solvation = -113.248966 kcal Electronic energy + Delta-G solvation = -18407.473416 eV Core-core repulsion = 15569.622653 eV Total energy + Delta-G solvation = -2837.850764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55738 -39.83297 -37.14101 -35.73581 -34.01471 -31.81786 -29.55230 -29.05645 -27.99231 -26.13012 -23.81354 -22.17828 -21.34301 -19.80961 -18.62067 -18.35257 -17.45708 -17.17933 -16.71332 -16.48533 -16.25374 -15.18454 -14.90167 -14.52724 -14.34343 -14.08931 -13.91833 -13.34612 -13.08302 -12.97793 -12.80479 -12.76003 -12.33495 -12.26443 -11.95243 -11.88601 -11.69086 -11.60885 -11.42578 -11.36344 -11.21847 -11.14217 -10.61549 -8.87321 -8.21321 -6.30386 1.36897 1.39886 1.47124 1.48003 1.95978 2.38594 3.10779 3.51083 3.67350 3.73568 4.03379 4.15286 4.33217 4.35426 4.37368 4.41366 4.59046 4.60100 4.69181 4.76425 4.80307 4.93823 5.00151 5.11549 5.14201 5.23899 5.30109 5.31008 5.51407 5.56097 5.60348 5.67006 6.10043 6.57813 6.82034 6.93033 7.03322 7.39400 8.88833 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.008877 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.251624 B = 3153.517191 C = 4192.589031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.457 3.543 4 O -0.499 6.499 5 C -0.100 4.100 6 C 0.118 3.882 7 N -0.669 5.669 8 C 0.212 3.788 9 C -0.534 4.534 10 H 0.052 0.948 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.964 3.036 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.275 1.275 17 C -0.097 4.097 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.154 4.154 21 H 0.130 0.870 22 H 0.067 0.933 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.137 0.863 26 H 0.330 0.670 27 H 0.001 0.999 28 H -0.029 1.029 29 H 0.264 0.736 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -0.715 14.175 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.297 6.297 3 C 0.300 3.700 4 O -0.385 6.385 5 C -0.138 4.138 6 C 0.027 3.973 7 N -0.299 5.299 8 C 0.084 3.916 9 C -0.572 4.572 10 H 0.070 0.930 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.200 1.200 17 C -0.136 4.136 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.193 4.193 21 H 0.148 0.852 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.154 0.846 26 H 0.147 0.853 27 H 0.019 0.981 28 H -0.012 1.012 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.019 -0.849 14.133 14.159 hybrid contribution 0.191 0.375 -1.490 1.549 sum 0.210 -0.474 12.643 12.653 Atomic orbital electron populations 1.23389 0.75632 1.05140 1.01860 1.86472 1.24546 1.33948 1.84734 1.23871 0.92668 0.81119 0.72387 1.90645 1.67231 1.36575 1.44029 1.21699 0.87318 0.98995 1.05758 1.21517 0.91747 0.91848 0.92234 1.60752 1.61640 1.05257 1.02261 1.19199 0.92384 0.92919 0.87095 1.21515 1.27553 1.14736 0.93407 0.92960 1.25828 0.96214 0.95463 1.01845 1.70053 1.39153 1.23488 1.24218 0.85524 0.78787 0.78695 0.78114 1.19236 1.20389 1.20039 1.22122 0.97795 0.99253 0.94382 1.22399 0.93792 1.01697 0.97376 1.22423 1.00021 0.96294 0.96664 1.23093 0.95839 1.00145 1.00247 0.85200 0.91401 0.93893 0.89530 0.84562 0.85268 0.98118 1.01177 0.92699 0.92500 0.91868 0.89819 0.90667 0.89714 0.92653 0.89687 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.56 113.37 1.20 2.11 16 2 O -0.38 -13.13 10.57 -51.38 -0.54 -13.67 16 3 C 0.46 17.47 7.08 71.24 0.50 17.97 16 4 O -0.50 -21.61 13.84 21.96 0.30 -21.31 16 5 C -0.10 -3.37 3.98 29.85 0.12 -3.25 16 6 C 0.12 4.09 0.39 4.25 0.00 4.09 16 7 N -0.67 -29.84 4.57 -470.58 -2.15 -31.99 16 8 C 0.21 11.36 4.72 85.56 0.40 11.77 16 9 C -0.53 -31.61 9.35 25.60 0.24 -31.37 16 10 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 11 C 0.00 0.28 5.46 84.66 0.46 0.74 16 12 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 13 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 17 C -0.10 -2.86 5.02 31.36 0.16 -2.70 16 18 C -0.12 -2.53 6.83 31.71 0.22 -2.31 16 19 C -0.12 -2.86 6.91 31.89 0.22 -2.64 16 20 C -0.15 -4.71 5.83 31.67 0.18 -4.53 16 21 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 22 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 23 H 0.04 1.34 8.13 -2.39 -0.02 1.33 16 24 H 0.09 3.26 6.64 -2.39 -0.02 3.25 16 25 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16 26 H 0.33 14.47 8.77 -89.69 -0.79 13.68 16 27 H 0.00 0.05 6.04 -2.39 -0.01 0.03 16 28 H -0.03 -1.65 6.34 -2.39 -0.02 -1.67 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.06 1.90 7.92 -2.39 -0.02 1.88 16 31 H 0.06 1.77 7.27 -2.39 -0.02 1.75 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 2.21 7.86 -2.39 -0.02 2.19 16 37 H 0.05 1.71 6.07 -2.39 -0.01 1.70 16 Total: -1.00 -69.92 297.38 3.90 -66.02 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.27 Total: 19.43 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 3.71 Total: -10.12 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -1.86 Total: -88.23 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.24 Total: -34.98 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -69.92 3.90 -66.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411658624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.230 kcal (2) G-P(sol) polarization free energy of solvation -69.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds