Wall clock time and date at job start Mon Mar 30 2020 03:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 116.99975 * 2 1 4 4 O 1.20826 * 120.00259 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00123 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46550 * 60.00164 * 5 3 2 7 7 C 1.52998 * 109.47273 * 300.00314 * 5 3 2 8 8 C 1.52992 * 109.47228 * 179.97438 * 7 5 3 9 9 C 1.53008 * 109.46946 * 60.00345 * 8 7 5 10 10 C 1.52998 * 109.46875 * 299.99871 * 9 8 7 11 11 C 1.53002 * 109.47314 * 60.00204 * 10 9 8 12 12 H 1.08999 * 109.47194 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47078 * 59.99503 * 11 10 9 14 14 C 1.46904 * 110.99713 * 85.00292 * 13 11 10 15 15 C 1.50696 * 109.46794 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 H 1.08999 * 109.47168 * 299.99553 * 1 2 3 24 24 H 1.09000 * 109.47414 * 59.99889 * 1 2 3 25 25 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47145 * 300.00072 * 7 5 3 27 27 H 1.09000 * 109.47171 * 59.99350 * 7 5 3 28 28 H 1.08999 * 109.47107 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.47522 * 300.00500 * 8 7 5 30 30 H 1.09007 * 109.47032 * 59.99693 * 9 8 7 31 31 H 1.08994 * 109.47099 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.46912 * 299.99919 * 10 9 8 33 33 H 1.08998 * 109.46813 * 180.02562 * 10 9 8 34 34 H 1.00893 * 111.00212 * 321.04797 * 13 11 10 35 35 H 1.09005 * 109.47078 * 59.99805 * 14 13 11 36 36 H 1.09002 * 109.47005 * 300.00021 * 14 13 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1129 0.5815 1.2501 8 6 5.6408 0.6611 1.2504 9 6 6.0751 2.1282 1.2501 10 6 5.5285 2.8216 0.0006 11 6 4.0005 2.7420 0.0003 12 1 3.6111 3.2356 -0.8902 13 7 3.4753 3.4083 1.1995 14 6 3.3371 4.8544 0.9803 15 6 2.7964 5.5022 2.2288 16 1 2.5777 4.9001 3.0983 17 6 2.5819 6.8639 2.2614 18 7 2.1105 7.4294 3.3512 19 14 2.9608 7.9053 0.7577 20 1 4.3677 8.3761 0.8233 21 1 2.7678 7.0916 -0.4694 22 1 2.0481 9.0762 0.7238 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.7228 1.0757 2.1399 27 1 3.8038 -0.4638 1.2502 28 1 6.0302 0.1675 2.1408 29 1 6.0306 0.1667 0.3607 30 1 5.6852 2.6227 2.1399 31 1 7.1635 2.1849 1.2507 32 1 5.9182 2.3271 -0.8892 33 1 5.8382 3.8666 0.0001 34 1 4.0558 3.2182 2.0024 35 1 2.6506 5.0324 0.1524 36 1 4.3117 5.2805 0.7422 37 1 1.9599 8.3873 3.3742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411783119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:54 Heat of formation + Delta-G solvation = -95.897657 kcal Electronic energy + Delta-G solvation = -18326.556926 eV Core-core repulsion = 15489.458571 eV Total energy + Delta-G solvation = -2837.098355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37792 -38.50540 -35.89691 -34.11097 -32.13158 -31.26047 -29.50470 -27.52754 -26.22586 -23.43184 -22.29109 -21.44264 -20.45072 -18.61592 -17.15862 -16.82399 -16.25412 -16.01608 -15.28641 -14.65920 -14.19563 -14.02310 -13.73146 -13.18646 -12.96317 -12.64285 -12.42264 -12.34480 -12.03539 -11.74676 -11.70922 -11.64535 -11.09076 -10.74410 -10.51232 -10.43888 -10.39885 -10.27053 -9.89490 -9.72375 -9.64602 -9.17739 -8.52210 -7.31832 -5.98419 -3.94553 2.75374 3.05508 3.32841 3.40487 3.45328 4.49066 4.73534 4.85845 4.88068 5.17135 5.27839 5.27867 5.33380 5.35345 5.36709 5.41027 5.51586 5.61958 5.70197 5.73709 5.86456 5.94399 6.11639 6.19933 6.27250 6.32749 6.43709 6.56043 6.78589 6.92291 7.15235 7.72888 7.99258 8.30188 8.46578 8.74730 9.09975 9.64481 11.15274 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.007943 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.270097 B = 3524.479776 C = 4289.292260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.372 6.372 3 C 0.456 3.544 4 O -0.462 6.462 5 C -0.061 4.061 6 H 0.097 0.903 7 C -0.110 4.110 8 C -0.114 4.114 9 C -0.125 4.125 10 C -0.148 4.148 11 C 0.097 3.903 12 H 0.078 0.922 13 N -0.662 5.662 14 C 0.170 3.830 15 C -0.508 4.508 16 H 0.077 0.923 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.279 1.279 21 H -0.266 1.266 22 H -0.287 1.287 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.332 0.668 35 H 0.028 0.972 36 H -0.024 1.024 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -16.037 -7.823 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.291 6.291 3 C 0.296 3.704 4 O -0.345 6.345 5 C -0.081 4.081 6 H 0.115 0.885 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.162 4.162 10 C -0.187 4.187 11 C -0.015 4.015 12 H 0.096 0.904 13 N -0.293 5.293 14 C 0.042 3.958 15 C -0.547 4.547 16 H 0.095 0.905 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.205 1.205 21 H -0.191 1.191 22 H -0.213 1.213 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.046 0.954 36 H -0.006 1.006 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.217 -15.650 -7.887 18.026 hybrid contribution 0.810 1.076 -0.737 1.535 sum 5.027 -14.575 -8.624 17.665 Atomic orbital electron populations 1.23132 0.77297 1.02753 1.02515 1.86470 1.22709 1.34643 1.85246 1.23628 0.91860 0.81172 0.73707 1.90770 1.66316 1.35686 1.41690 1.21090 0.87270 0.98941 1.00818 0.88516 1.21483 0.95612 1.00279 0.97441 1.21508 0.95159 0.96710 1.01747 1.21574 1.00161 0.95563 0.98934 1.22202 0.97093 1.01242 0.98198 1.21362 0.91597 0.91783 0.96771 0.90420 1.60565 1.52987 1.12854 1.02914 1.19959 0.94054 0.83432 0.98313 1.21060 1.42354 0.92534 0.98714 0.90527 1.24893 0.94943 0.97795 0.95789 1.69907 1.46024 1.10990 1.27382 0.86826 0.78186 0.80186 0.84333 1.20472 1.19122 1.21263 0.91908 0.92417 0.88863 0.90257 0.91218 0.91691 0.92095 0.91117 0.92030 0.92023 0.91300 0.84810 0.95408 1.00606 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.37 -5.43 10.47 -39.24 -0.41 -5.85 16 3 C 0.46 7.74 7.09 36.01 0.26 8.00 16 4 O -0.46 -9.87 14.95 -18.75 -0.28 -10.15 16 5 C -0.06 -0.88 2.45 -91.77 -0.23 -1.10 16 6 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 7 C -0.11 -1.39 4.90 -26.74 -0.13 -1.52 16 8 C -0.11 -1.22 5.92 -26.73 -0.16 -1.38 16 9 C -0.12 -1.55 5.67 -26.73 -0.15 -1.71 16 10 C -0.15 -2.07 5.52 -26.73 -0.15 -2.21 16 11 C 0.10 1.63 1.85 -67.71 -0.13 1.50 16 12 H 0.08 1.42 7.76 -51.93 -0.40 1.02 16 13 N -0.66 -13.99 4.55 -107.98 -0.49 -14.49 16 14 C 0.17 4.30 4.31 -4.98 -0.02 4.28 16 15 C -0.51 -15.10 9.87 -34.44 -0.34 -15.44 16 16 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -28.62 13.96 55.43 0.77 -27.85 16 19 Si 0.88 22.46 27.47 -169.99 -4.67 17.79 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 24 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.16 7.21 -51.93 -0.37 0.79 16 27 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.01 6.26 -51.93 -0.32 0.68 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.06 7.46 -51.93 -0.39 0.68 16 34 H 0.33 6.72 5.56 -39.30 -0.22 6.51 16 35 H 0.03 0.75 7.11 -51.93 -0.37 0.38 16 36 H -0.02 -0.58 6.86 -51.93 -0.36 -0.94 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -33.80 293.58 -6.56 -40.36 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.83 Total: 1.92 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.08 Total: -6.16 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.28 Total: -42.33 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.69 Total: -16.00 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.80 -6.56 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411783119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.540 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds