Wall clock time and date at job start Mon Mar 30 2020 03:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 116.99975 * 2 1 4 4 O 1.20826 * 120.00259 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00123 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46550 * 60.00164 * 5 3 2 7 7 C 1.52998 * 109.47273 * 300.00314 * 5 3 2 8 8 C 1.52992 * 109.47228 * 179.97438 * 7 5 3 9 9 C 1.53008 * 109.46946 * 60.00345 * 8 7 5 10 10 C 1.52998 * 109.46875 * 299.99871 * 9 8 7 11 11 C 1.53002 * 109.47314 * 60.00204 * 10 9 8 12 12 H 1.08999 * 109.47194 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47078 * 59.99503 * 11 10 9 14 14 C 1.46904 * 110.99713 * 85.00292 * 13 11 10 15 15 C 1.50696 * 109.46794 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 H 1.08999 * 109.47168 * 299.99553 * 1 2 3 24 24 H 1.09000 * 109.47414 * 59.99889 * 1 2 3 25 25 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47145 * 300.00072 * 7 5 3 27 27 H 1.09000 * 109.47171 * 59.99350 * 7 5 3 28 28 H 1.08999 * 109.47107 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.47522 * 300.00500 * 8 7 5 30 30 H 1.09007 * 109.47032 * 59.99693 * 9 8 7 31 31 H 1.08994 * 109.47099 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.46912 * 299.99919 * 10 9 8 33 33 H 1.08998 * 109.46813 * 180.02562 * 10 9 8 34 34 H 1.00893 * 111.00212 * 321.04797 * 13 11 10 35 35 H 1.09005 * 109.47078 * 59.99805 * 14 13 11 36 36 H 1.09002 * 109.47005 * 300.00021 * 14 13 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1129 0.5815 1.2501 8 6 5.6408 0.6611 1.2504 9 6 6.0751 2.1282 1.2501 10 6 5.5285 2.8216 0.0006 11 6 4.0005 2.7420 0.0003 12 1 3.6111 3.2356 -0.8902 13 7 3.4753 3.4083 1.1995 14 6 3.3371 4.8544 0.9803 15 6 2.7964 5.5022 2.2288 16 1 2.5777 4.9001 3.0983 17 6 2.5819 6.8639 2.2614 18 7 2.1105 7.4294 3.3512 19 14 2.9608 7.9053 0.7577 20 1 4.3677 8.3761 0.8233 21 1 2.7678 7.0916 -0.4694 22 1 2.0481 9.0762 0.7238 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.7228 1.0757 2.1399 27 1 3.8038 -0.4638 1.2502 28 1 6.0302 0.1675 2.1408 29 1 6.0306 0.1667 0.3607 30 1 5.6852 2.6227 2.1399 31 1 7.1635 2.1849 1.2507 32 1 5.9182 2.3271 -0.8892 33 1 5.8382 3.8666 0.0001 34 1 4.0558 3.2182 2.0024 35 1 2.6506 5.0324 0.1524 36 1 4.3117 5.2805 0.7422 37 1 1.9599 8.3873 3.3742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411783119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:54 Heat of formation + Delta-G solvation = -119.236782 kcal Electronic energy + Delta-G solvation = -18327.568986 eV Core-core repulsion = 15489.458571 eV Total energy + Delta-G solvation = -2838.110415 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.65840 -39.73655 -37.22290 -35.87396 -34.16893 -32.36489 -30.98456 -28.71351 -28.00339 -24.57541 -23.62929 -23.22361 -21.68726 -19.91850 -18.90180 -18.38620 -17.67951 -17.24364 -16.80199 -16.04635 -15.87484 -15.41704 -14.94145 -14.68211 -14.43547 -14.12475 -13.97252 -13.61961 -13.48905 -13.24229 -12.95405 -12.82931 -12.62036 -12.24655 -12.09939 -11.85228 -11.67053 -11.64011 -11.57525 -11.19059 -11.05125 -10.94028 -10.81529 -8.98233 -8.32298 -6.35157 1.28641 1.32701 1.44239 1.44423 1.91119 2.31581 3.01782 3.44801 3.75522 3.78522 3.95706 4.18343 4.26825 4.32849 4.36760 4.38930 4.45919 4.55392 4.63905 4.72993 4.74255 4.79077 5.00013 5.05053 5.14089 5.21030 5.26141 5.31789 5.41706 5.53943 5.56007 5.59176 5.97976 6.61956 6.66732 6.83477 7.01535 7.29432 8.84950 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.007943 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.270097 B = 3524.479776 C = 4289.292260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.456 3.544 4 O -0.519 6.519 5 C -0.057 4.057 6 H 0.138 0.862 7 C -0.106 4.106 8 C -0.105 4.105 9 C -0.125 4.125 10 C -0.141 4.141 11 C 0.092 3.908 12 H 0.058 0.942 13 N -0.674 5.674 14 C 0.187 3.813 15 C -0.523 4.523 16 H 0.032 0.968 17 C 0.007 3.993 18 N -0.948 5.948 19 Si 0.951 3.049 20 H -0.259 1.259 21 H -0.258 1.258 22 H -0.280 1.280 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.136 0.864 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.334 0.666 35 H 0.009 0.991 36 H -0.014 1.014 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 -17.804 -9.901 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.405 6.405 5 C -0.077 4.077 6 H 0.155 0.845 7 C -0.144 4.144 8 C -0.142 4.142 9 C -0.162 4.162 10 C -0.180 4.180 11 C -0.019 4.019 12 H 0.077 0.923 13 N -0.306 5.306 14 C 0.059 3.941 15 C -0.561 4.561 16 H 0.051 0.949 17 C -0.190 4.190 18 N -0.589 5.589 19 Si 0.775 3.225 20 H -0.184 1.184 21 H -0.183 1.183 22 H -0.205 1.205 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.155 0.845 35 H 0.028 0.972 36 H 0.003 0.997 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.133 -17.471 -9.965 21.027 hybrid contribution 0.134 1.512 -0.019 1.518 sum 6.267 -15.959 -9.985 19.841 Atomic orbital electron populations 1.23404 0.75946 1.05257 1.01658 1.86463 1.24045 1.33248 1.84517 1.24268 0.93008 0.80940 0.71944 1.90756 1.67681 1.37534 1.44535 1.21194 0.85541 0.97475 1.03467 0.84480 1.21483 0.97169 1.00704 0.95054 1.21488 0.93266 0.95526 1.03901 1.21588 1.01285 0.96519 0.96851 1.22135 0.94459 1.00876 1.00552 1.21470 0.93793 0.92850 0.93785 0.92317 1.60412 1.54604 1.10498 1.05110 1.19584 0.93453 0.85971 0.95136 1.21342 1.42752 0.92846 0.99154 0.94937 1.25876 0.94546 0.99262 0.99363 1.70059 1.47271 1.11691 1.29905 0.85655 0.78968 0.78081 0.79844 1.18412 1.18265 1.20498 0.93600 0.92562 0.84623 0.93317 0.89185 0.90177 0.89240 0.93890 0.89902 0.88542 0.93194 0.84534 0.97249 0.99661 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.37 -10.11 10.47 -51.35 -0.54 -10.64 16 3 C 0.46 15.22 7.09 71.24 0.51 15.73 16 4 O -0.52 -22.80 14.95 21.96 0.33 -22.47 16 5 C -0.06 -1.52 2.45 -11.54 -0.03 -1.55 16 6 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 7 C -0.11 -2.42 4.90 30.59 0.15 -2.27 16 8 C -0.10 -1.83 5.92 30.59 0.18 -1.65 16 9 C -0.12 -2.79 5.67 30.60 0.17 -2.62 16 10 C -0.14 -3.60 5.52 30.59 0.17 -3.43 16 11 C 0.09 3.02 1.85 44.92 0.08 3.10 16 12 H 0.06 2.14 7.76 -2.39 -0.02 2.12 16 13 N -0.67 -29.33 4.55 -495.55 -2.26 -31.58 16 14 C 0.19 9.71 4.31 85.55 0.37 10.08 16 15 C -0.52 -32.44 9.87 25.60 0.25 -32.19 16 16 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 17 C 0.01 0.41 5.47 84.66 0.46 0.87 16 18 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 19 Si 0.95 46.87 27.47 68.60 1.88 48.75 16 20 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 24 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 25 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.41 7.21 -2.38 -0.02 1.39 16 27 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.20 6.26 -2.38 -0.01 1.19 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.46 7.46 -2.39 -0.02 1.44 16 34 H 0.33 14.09 5.56 -89.70 -0.50 13.59 16 35 H 0.01 0.52 7.11 -2.38 -0.02 0.51 16 36 H -0.01 -0.70 6.86 -2.39 -0.02 -0.71 16 37 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -77.44 293.58 3.73 -73.71 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.50 Total: 15.91 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 3.51 Total: -12.03 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -1.96 Total: -93.23 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.21 Total: -33.11 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.88 Total: 48.75 kcal Total: -77.44 3.73 -73.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411783119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.529 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds