Wall clock time and date at job start Mon Mar 30 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48499 * 109.47110 * 269.99536 * 3 2 1 5 5 H 1.48501 * 109.47137 * 29.99528 * 3 2 1 6 6 H 1.48496 * 109.47323 * 149.99569 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47039 * 180.02562 * 12 11 10 14 14 H 1.09008 * 109.47260 * 304.99930 * 13 12 11 15 15 O 1.42901 * 109.47622 * 65.00060 * 13 12 11 16 16 C 1.53002 * 109.47169 * 185.00340 * 13 12 11 17 17 C 1.53000 * 109.47144 * 175.00235 * 16 13 12 18 18 C 1.54270 * 110.03001 * 292.16203 * 17 16 13 19 19 C 1.54895 * 104.19420 * 217.10948 * 18 17 16 20 20 C 1.54879 * 102.75059 * 37.94167 * 19 18 17 21 21 C 1.53878 * 110.03339 * 174.99774 * 17 16 13 22 22 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 24 24 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 25 25 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 26 26 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 27 27 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 28 28 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 29 29 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 30 30 H 0.96697 * 113.99359 * 59.99411 * 15 13 12 31 31 H 1.09002 * 109.46730 * 294.99743 * 16 13 12 32 32 H 1.08994 * 109.47589 * 54.99527 * 16 13 12 33 33 H 1.08997 * 110.02337 * 53.60338 * 17 16 13 34 34 H 1.08998 * 110.48680 * 335.78460 * 18 17 16 35 35 H 1.08997 * 110.48471 * 98.43037 * 18 17 16 36 36 H 1.08995 * 110.75415 * 279.62693 * 19 18 17 37 37 H 1.09007 * 110.91079 * 156.33050 * 19 18 17 38 38 H 1.09000 * 110.48991 * 203.37799 * 20 19 18 39 39 H 1.09000 * 110.59986 * 80.79362 * 20 19 18 40 40 H 1.08998 * 110.03416 * 238.56785 * 21 17 16 41 41 H 1.09005 * 110.03239 * 359.94985 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 6 1.6350 -7.3800 0.0018 14 1 0.9422 -7.3813 0.8434 15 8 0.9010 -7.4887 -1.2195 16 6 2.5931 -8.5662 0.1282 17 6 1.7878 -9.8611 0.2536 18 6 1.0357 -9.8873 1.6002 19 6 1.1036 -11.3697 2.0444 20 6 2.5266 -11.7937 1.6039 21 6 2.7358 -11.0732 0.2559 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6043 0.8906 26 1 2.8718 -3.6044 -0.8894 27 1 0.8744 -4.9841 0.7828 28 1 3.0631 -6.0353 -0.8882 29 1 3.0630 -6.0345 0.8918 30 1 1.4550 -7.4937 -2.0121 31 1 3.2272 -8.6169 -0.7569 32 1 3.2152 -8.4380 1.0140 33 1 1.0804 -9.9420 -0.5717 34 1 1.5345 -9.2477 2.3283 35 1 -0.0003 -9.5768 1.4646 36 1 0.3473 -11.9622 1.5296 37 1 0.9915 -11.4575 3.1251 38 1 2.5787 -12.8743 1.4709 39 1 3.2677 -11.4637 2.3319 40 1 2.4879 -11.7427 -0.5678 41 1 3.7695 -10.7390 0.1668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572954090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:56 Heat of formation + Delta-G solvation = -112.421875 kcal Electronic energy + Delta-G solvation = -17156.623357 eV Core-core repulsion = 14454.641553 eV Total energy + Delta-G solvation = -2701.981804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.95584 -38.23952 -36.74053 -34.90876 -32.85424 -31.50050 -29.57803 -28.69342 -26.32566 -24.45481 -22.80109 -22.23267 -21.37119 -20.40122 -18.53328 -17.58804 -17.12276 -16.59741 -16.38447 -15.97181 -15.79032 -15.48013 -14.88402 -14.44229 -14.18129 -14.05205 -13.96274 -13.50844 -12.94128 -12.85747 -12.78258 -12.44407 -12.12363 -12.02256 -11.93817 -11.86768 -11.81766 -11.51908 -11.48919 -11.36157 -11.34257 -11.21985 -10.58104 -10.54252 -9.25044 -8.21332 -6.33661 1.39691 1.41842 1.52773 2.39736 3.11813 3.18154 3.66344 3.72409 3.79853 3.84372 4.03537 4.23681 4.33088 4.45354 4.49082 4.59055 4.59885 4.62918 4.71835 4.76844 4.80396 4.89435 4.94991 5.02095 5.04977 5.11092 5.15704 5.27419 5.29119 5.42256 5.43335 5.50972 5.61345 5.64989 5.76993 6.12159 6.26654 6.49752 6.83835 6.98118 7.35878 8.91009 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.059933 B = 0.003208 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.078103 B = 8726.341137 C = 8767.908144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.693 5.693 12 C 0.027 3.973 13 C 0.118 3.882 14 H 0.086 0.914 15 O -0.567 6.567 16 C -0.133 4.133 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.120 4.120 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.010 1.010 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.336 0.664 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.381 0.619 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 -23.324 2.302 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.324 5.324 12 C -0.102 4.102 13 C 0.058 3.942 14 H 0.104 0.896 15 O -0.373 6.373 16 C -0.171 4.171 17 C -0.105 4.105 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.158 4.158 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.008 0.992 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.230 0.770 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.208 -23.238 2.023 24.138 hybrid contribution 0.780 1.185 0.538 1.517 sum 6.988 -22.053 2.561 23.275 Atomic orbital electron populations 1.70120 1.07928 1.27876 1.51337 1.26026 0.95796 1.03547 0.94548 0.85380 0.78599 0.78076 0.78565 1.19683 1.20641 1.18593 1.21623 0.93566 0.92230 1.51065 0.92032 1.18918 0.94324 0.92458 0.94904 1.21788 0.95519 0.88530 0.98648 1.60438 1.20165 1.01716 1.50077 1.22790 0.94892 0.91265 1.01270 1.21866 0.93219 0.91492 0.87605 0.89642 1.86565 1.38373 1.96307 1.16105 1.22319 0.97744 0.93764 1.03306 1.21671 0.96947 0.94033 0.97830 1.22481 0.99889 0.97212 0.96665 1.22502 0.97360 0.95575 1.00882 1.22361 0.96731 1.00212 0.96844 1.22224 0.99446 0.96246 0.97864 0.92691 0.98975 0.99208 0.96356 0.92380 0.84711 0.90658 0.94264 0.77030 0.90532 0.90488 0.91514 0.91717 0.92685 0.91631 0.91265 0.91117 0.91542 0.91704 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.74 5.23 29.85 0.16 1.89 16 10 C 0.08 3.64 5.62 86.30 0.49 4.13 16 11 N -0.69 -25.51 6.45 -513.88 -3.32 -28.82 16 12 C 0.03 0.74 5.32 86.30 0.46 1.20 16 13 C 0.12 2.72 3.07 30.59 0.09 2.81 16 14 H 0.09 2.14 7.37 -2.38 -0.02 2.12 16 15 O -0.57 -14.83 12.74 -148.98 -1.90 -16.73 16 16 C -0.13 -2.28 4.02 30.59 0.12 -2.15 16 17 C -0.09 -1.46 2.88 -10.07 -0.03 -1.49 16 18 C -0.12 -2.17 5.46 31.67 0.17 -1.99 16 19 C -0.13 -1.83 6.91 31.88 0.22 -1.61 16 20 C -0.12 -1.62 6.83 31.67 0.22 -1.40 16 21 C -0.12 -1.68 6.46 31.32 0.20 -1.48 16 22 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.34 12.30 8.73 -89.69 -0.78 11.52 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.38 7.59 9.04 -74.06 -0.67 6.92 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16 33 H 0.07 1.31 7.69 -2.39 -0.02 1.29 16 34 H 0.06 1.12 7.76 -2.39 -0.02 1.10 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.89 7.67 -2.38 -0.02 0.87 16 Total: -1.00 -67.00 327.87 -0.58 -67.58 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.47 Total: 20.40 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 2.80 Total: -31.37 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -3.03 Total: -86.70 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.90 Total: -16.73 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.00 -0.58 -67.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572954090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.842 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds