Wall clock time and date at job start Mon Mar 30 2020 03:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99864 * 2 1 4 4 C 1.53003 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.78097 * 195.78684 * 4 3 2 6 6 C 1.53757 * 113.55217 * 326.63978 * 4 3 2 7 7 C 1.53490 * 83.25906 * 140.98703 * 6 4 3 8 8 N 1.47066 * 113.46695 * 64.99790 * 4 3 2 9 9 C 1.34778 * 136.05676 * 38.14017 * 8 4 3 10 10 O 1.21274 * 119.99823 * 359.62463 * 9 8 4 11 11 C 1.50705 * 119.99709 * 179.62456 * 9 8 4 12 12 C 1.52996 * 109.46718 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.09008 * 109.46971 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47412 * 300.00053 * 1 2 3 24 24 H 1.08998 * 109.46891 * 60.00293 * 1 2 3 25 25 H 1.08997 * 109.46830 * 60.00395 * 3 2 1 26 26 H 1.08998 * 109.47025 * 299.99865 * 3 2 1 27 27 H 1.09001 * 114.39560 * 27.42146 * 6 4 3 28 28 H 1.09004 * 114.26523 * 254.54215 * 6 4 3 29 29 H 1.09003 * 113.47100 * 218.97856 * 7 6 4 30 30 H 1.09007 * 113.46723 * 88.54464 * 7 6 4 31 31 H 1.09000 * 109.46918 * 59.99955 * 11 9 8 32 32 H 1.09002 * 109.47135 * 299.99692 * 11 9 8 33 33 H 1.09000 * 109.47441 * 60.00302 * 12 11 9 34 34 H 1.09002 * 109.47087 * 299.99748 * 12 11 9 35 35 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 36 36 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 4.0326 2.1153 0.2727 6 6 4.0553 -0.0375 0.7740 7 6 5.0658 -0.1118 -0.3789 8 7 4.0737 0.5703 -1.2236 9 6 3.7876 0.6167 -2.5398 10 8 2.8693 1.3020 -2.9369 11 6 4.6090 -0.1832 -3.5181 12 6 4.0790 0.0450 -4.9351 13 6 4.9124 -0.7675 -5.9281 14 6 4.3901 -0.5433 -7.3239 15 1 3.5477 0.1127 -7.4863 16 6 4.9877 -1.1757 -8.3934 17 7 6.0132 -1.9749 -8.1956 18 14 4.3398 -0.8983 -10.1234 19 1 3.2952 -1.9087 -10.4287 20 1 3.7550 0.4633 -10.2205 21 1 5.4542 -1.0290 -11.0962 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6885 1.8463 -0.8900 27 1 3.3591 -0.8754 0.8129 28 1 4.4976 0.2002 1.7415 29 1 5.2831 -1.1303 -0.7008 30 1 5.9665 0.4771 -0.2053 31 1 4.5390 -1.2424 -3.2705 32 1 5.6502 0.1347 -3.4635 33 1 4.1487 1.1041 -5.1829 34 1 3.0379 -0.2732 -4.9893 35 1 4.8425 -1.8266 -5.6803 36 1 5.9537 -0.4497 -5.8741 37 1 6.3494 -2.1192 -7.2972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594035730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:02 Heat of formation + Delta-G solvation = -63.241887 kcal Electronic energy + Delta-G solvation = -17346.437648 eV Core-core repulsion = 14510.755354 eV Total energy + Delta-G solvation = -2835.682294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52769 -38.06847 -37.18708 -34.39705 -32.10561 -30.30329 -29.14905 -27.24291 -26.28150 -23.64053 -23.28254 -21.86943 -20.24803 -18.73249 -17.14025 -16.61011 -16.36886 -16.17695 -15.91880 -15.08399 -14.96836 -14.00725 -13.67417 -13.33632 -13.22665 -12.99930 -12.65524 -12.46976 -12.18685 -11.73805 -11.54687 -11.43034 -11.36791 -10.83392 -10.67198 -10.56268 -10.06555 -9.90926 -9.76358 -9.71748 -9.29756 -8.65153 -8.45340 -8.25173 -6.29521 -3.97210 2.84554 2.97173 3.49048 3.53058 3.59121 3.69102 4.20965 4.60269 4.66810 4.79055 4.87473 5.07441 5.08806 5.21383 5.24665 5.29873 5.37996 5.47856 5.53995 5.56342 5.59719 5.68615 5.70766 5.94572 6.11738 6.25803 6.64729 6.82242 7.01198 7.04092 7.50400 7.61617 7.85386 8.31518 8.45537 8.55852 8.96793 9.74541 11.11440 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036655 B = 0.004358 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.689852 B = 6422.828802 C = 6856.334303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.053 3.947 4 C 0.128 3.872 5 H 0.102 0.898 6 C -0.143 4.143 7 C 0.098 3.902 8 N -0.645 5.645 9 C 0.546 3.454 10 O -0.538 6.538 11 C -0.131 4.131 12 C -0.087 4.087 13 C 0.007 3.993 14 C -0.598 4.598 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 1.072 2.928 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.285 1.285 22 H 0.084 0.916 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.007 0.993 36 H 0.006 0.994 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 4.395 21.814 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.024 4.024 4 C 0.024 3.976 5 H 0.119 0.881 6 C -0.181 4.181 7 C -0.025 4.025 8 N -0.383 5.383 9 C 0.338 3.662 10 O -0.414 6.414 11 C -0.171 4.171 12 C -0.125 4.125 13 C -0.030 4.030 14 C -0.637 4.637 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.553 5.553 18 Si 0.900 3.100 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.210 1.210 22 H 0.103 0.897 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.712 4.201 19.732 20.718 hybrid contribution -0.365 0.717 1.684 1.866 sum -5.077 4.918 21.416 22.553 Atomic orbital electron populations 1.22703 0.81122 1.02637 0.99831 1.87847 1.19512 1.27324 1.95393 1.22603 0.93234 0.85450 1.01156 1.22781 0.93136 0.97835 0.83808 0.88077 1.23447 0.98643 0.99078 0.96937 1.22914 0.92919 0.98514 0.88172 1.49830 1.34936 1.49017 1.04528 1.20764 0.84310 0.81383 0.79786 1.90646 1.31299 1.42334 1.77098 1.21787 0.99553 0.99953 0.95816 1.21310 1.00061 1.01055 0.90085 1.19263 0.94761 0.94479 0.94469 1.22107 1.18128 1.31016 0.92420 0.93215 1.25857 0.94989 0.93685 1.04480 1.70758 1.23959 1.35450 1.25180 0.83509 0.75710 0.75867 0.74888 1.21479 1.21475 1.21037 0.89726 0.94385 0.93958 0.92667 0.91357 0.87517 0.89750 0.90167 0.89954 0.89607 0.89701 0.92605 0.92548 0.97518 0.97539 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -4.92 9.17 -35.23 -0.32 -5.25 16 3 C 0.05 0.62 5.94 37.16 0.22 0.84 16 4 C 0.13 1.37 4.58 -72.26 -0.33 1.04 16 5 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 6 C -0.14 -1.20 7.85 -26.08 -0.20 -1.41 16 7 C 0.10 0.93 8.41 -8.51 -0.07 0.86 16 8 N -0.65 -8.93 3.56 -177.29 -0.63 -9.57 16 9 C 0.55 9.89 7.98 -10.98 -0.09 9.80 16 10 O -0.54 -11.62 15.42 5.56 0.09 -11.53 16 11 C -0.13 -2.40 5.53 -27.88 -0.15 -2.56 16 12 C -0.09 -2.01 4.44 -26.73 -0.12 -2.13 16 13 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 14 C -0.60 -18.03 9.11 -34.44 -0.31 -18.34 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 17 N -0.92 -28.89 13.65 55.43 0.76 -28.14 16 18 Si 1.07 26.38 29.90 -169.99 -5.08 21.30 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.99 7.04 -51.93 -0.37 0.62 16 27 H 0.11 1.05 6.95 -51.93 -0.36 0.69 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 34 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 36 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 37 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -35.83 310.22 -6.81 -42.63 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -6.12 Total: -4.06 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.17 Total: -10.07 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.12 Total: -37.70 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.24 Total: -16.78 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -5.08 Total: 21.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.83 -6.81 -42.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594035730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.607 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds