Wall clock time and date at job start Mon Mar 30 2020 03:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99864 * 2 1 4 4 C 1.53003 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.78097 * 195.78684 * 4 3 2 6 6 C 1.53757 * 113.55217 * 326.63978 * 4 3 2 7 7 C 1.53490 * 83.25906 * 140.98703 * 6 4 3 8 8 N 1.47066 * 113.46695 * 64.99790 * 4 3 2 9 9 C 1.34778 * 136.05676 * 38.14017 * 8 4 3 10 10 O 1.21274 * 119.99823 * 359.62463 * 9 8 4 11 11 C 1.50705 * 119.99709 * 179.62456 * 9 8 4 12 12 C 1.52996 * 109.46718 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.09008 * 109.46971 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47412 * 300.00053 * 1 2 3 24 24 H 1.08998 * 109.46891 * 60.00293 * 1 2 3 25 25 H 1.08997 * 109.46830 * 60.00395 * 3 2 1 26 26 H 1.08998 * 109.47025 * 299.99865 * 3 2 1 27 27 H 1.09001 * 114.39560 * 27.42146 * 6 4 3 28 28 H 1.09004 * 114.26523 * 254.54215 * 6 4 3 29 29 H 1.09003 * 113.47100 * 218.97856 * 7 6 4 30 30 H 1.09007 * 113.46723 * 88.54464 * 7 6 4 31 31 H 1.09000 * 109.46918 * 59.99955 * 11 9 8 32 32 H 1.09002 * 109.47135 * 299.99692 * 11 9 8 33 33 H 1.09000 * 109.47441 * 60.00302 * 12 11 9 34 34 H 1.09002 * 109.47087 * 299.99748 * 12 11 9 35 35 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 36 36 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 4.0326 2.1153 0.2727 6 6 4.0553 -0.0375 0.7740 7 6 5.0658 -0.1118 -0.3789 8 7 4.0737 0.5703 -1.2236 9 6 3.7876 0.6167 -2.5398 10 8 2.8693 1.3020 -2.9369 11 6 4.6090 -0.1832 -3.5181 12 6 4.0790 0.0450 -4.9351 13 6 4.9124 -0.7675 -5.9281 14 6 4.3901 -0.5433 -7.3239 15 1 3.5477 0.1127 -7.4863 16 6 4.9877 -1.1757 -8.3934 17 7 6.0132 -1.9749 -8.1956 18 14 4.3398 -0.8983 -10.1234 19 1 3.2952 -1.9087 -10.4287 20 1 3.7550 0.4633 -10.2205 21 1 5.4542 -1.0290 -11.0962 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6885 1.8463 -0.8900 27 1 3.3591 -0.8754 0.8129 28 1 4.4976 0.2002 1.7415 29 1 5.2831 -1.1303 -0.7008 30 1 5.9665 0.4771 -0.2053 31 1 4.5390 -1.2424 -3.2705 32 1 5.6502 0.1347 -3.4635 33 1 4.1487 1.1041 -5.1829 34 1 3.0379 -0.2732 -4.9893 35 1 4.8425 -1.8266 -5.6803 36 1 5.9537 -0.4497 -5.8741 37 1 6.3494 -2.1192 -7.2972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594035730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:02 Heat of formation + Delta-G solvation = -88.041527 kcal Electronic energy + Delta-G solvation = -17347.513041 eV Core-core repulsion = 14510.755354 eV Total energy + Delta-G solvation = -2836.757687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55156 -39.31529 -38.15366 -36.46964 -34.10758 -31.53760 -30.05034 -29.01286 -27.14460 -25.63177 -24.10776 -23.31402 -21.91330 -19.83662 -18.98702 -18.04985 -17.38606 -17.20559 -16.97902 -16.38524 -16.22250 -15.66964 -15.25137 -15.05110 -14.55098 -14.46962 -13.70251 -13.52853 -13.31289 -13.18063 -13.03299 -12.67480 -12.55163 -12.50911 -12.27161 -11.99487 -11.81952 -11.73692 -11.37229 -10.98423 -10.72079 -10.55800 -10.46213 -9.71237 -8.71833 -6.41386 1.50465 1.59657 1.60062 1.78831 1.81496 2.54848 2.76456 3.13155 3.41924 3.60688 3.95715 3.99680 4.03314 4.08894 4.28236 4.31882 4.45507 4.47146 4.50584 4.55092 4.63350 4.71869 4.75204 4.77083 4.84623 4.92395 5.02637 5.07109 5.39086 5.42556 5.46706 5.99237 6.14733 6.15891 6.57040 6.71728 7.14296 7.39065 8.69904 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036655 B = 0.004358 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.689852 B = 6422.828802 C = 6856.334303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.050 3.950 4 C 0.117 3.883 5 H 0.130 0.870 6 C -0.122 4.122 7 C 0.093 3.907 8 N -0.651 5.651 9 C 0.540 3.460 10 O -0.588 6.588 11 C -0.122 4.122 12 C -0.073 4.073 13 C 0.011 3.989 14 C -0.626 4.626 15 H 0.041 0.959 16 C -0.036 4.036 17 N -0.935 5.935 18 Si 1.120 2.880 19 H -0.271 1.271 20 H -0.274 1.274 21 H -0.276 1.276 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.024 0.976 25 H 0.088 0.912 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.037 0.963 35 H -0.003 1.003 36 H -0.001 1.001 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 4.545 23.611 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.322 6.322 3 C -0.027 4.027 4 C 0.015 3.985 5 H 0.147 0.853 6 C -0.159 4.159 7 C -0.028 4.028 8 N -0.387 5.387 9 C 0.331 3.669 10 O -0.469 6.469 11 C -0.161 4.161 12 C -0.112 4.112 13 C -0.026 4.026 14 C -0.663 4.663 15 H 0.059 0.941 16 C -0.233 4.233 17 N -0.572 5.572 18 Si 0.941 3.059 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.201 1.201 22 H 0.113 0.887 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.015 0.985 36 H 0.017 0.983 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.210 4.333 21.613 22.442 hybrid contribution -0.505 0.662 1.246 1.499 sum -4.715 4.995 22.859 23.869 Atomic orbital electron populations 1.22830 0.80136 1.03474 1.00206 1.87812 1.20778 1.28110 1.95481 1.22676 0.94115 0.85032 1.00888 1.23268 0.92708 1.00141 0.82357 0.85293 1.23348 0.97474 0.97007 0.98117 1.23312 0.93458 0.98900 0.87154 1.49932 1.35998 1.48873 1.03864 1.20515 0.83813 0.81108 0.81453 1.90622 1.33307 1.44490 1.78443 1.21577 1.00381 1.01040 0.93119 1.21023 0.98444 0.99136 0.92562 1.19181 0.94725 0.94342 0.94356 1.22525 1.18232 1.31176 0.94395 0.94051 1.27437 0.94403 0.92642 1.08830 1.70887 1.25026 1.36640 1.24625 0.82905 0.75874 0.76950 0.70191 1.19632 1.19942 1.20146 0.88748 0.91849 0.95690 0.89417 0.95059 0.89020 0.85647 0.89882 0.86985 0.88369 0.87805 0.94123 0.94450 0.98492 0.98271 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.40 -10.06 9.17 -148.98 -1.37 -11.42 16 3 C 0.05 1.11 5.94 71.98 0.43 1.54 16 4 C 0.12 2.23 4.58 41.88 0.19 2.42 16 5 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 6 C -0.12 -1.58 7.85 31.01 0.24 -1.34 16 7 C 0.09 1.46 8.41 83.17 0.70 2.16 16 8 N -0.65 -17.02 3.56 -833.23 -2.97 -19.99 16 9 C 0.54 19.65 7.98 87.66 0.70 20.35 16 10 O -0.59 -26.39 15.42 -3.01 -0.05 -26.44 16 11 C -0.12 -4.45 5.53 29.85 0.17 -4.29 16 12 C -0.07 -3.51 4.44 30.59 0.14 -3.37 16 13 C 0.01 0.61 4.28 29.85 0.13 0.73 16 14 C -0.63 -38.45 9.11 25.60 0.23 -38.22 16 15 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 16 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 17 N -0.93 -59.35 13.65 21.45 0.29 -59.05 16 18 Si 1.12 52.72 29.90 68.60 2.05 54.77 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H 0.09 1.63 8.14 -2.38 -0.02 1.62 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.03 0.93 7.04 -2.39 -0.02 0.92 16 27 H 0.09 1.54 6.95 -2.39 -0.02 1.53 16 28 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.04 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 35 H 0.00 -0.18 8.01 -2.39 -0.02 -0.20 16 36 H 0.00 -0.06 8.01 -2.38 -0.02 -0.07 16 37 H 0.26 16.38 7.22 -92.71 -0.67 15.71 16 Total: -1.00 -80.16 310.22 3.72 -76.43 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.12 Total: 5.57 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.63 Total: -19.87 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.68 Total: -79.05 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.41 Total: -37.86 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 2.05 Total: 54.77 kcal Total: -80.16 3.72 -76.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594035730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.607 kcal (2) G-P(sol) polarization free energy of solvation -80.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds