Wall clock time and date at job start Mon Mar 30 2020 04:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00516 * 2 1 4 4 C 1.34778 * 119.99446 * 180.02562 * 2 1 3 5 5 O 1.21593 * 120.00356 * 350.43418 * 4 2 1 6 6 N 1.34775 * 119.99640 * 170.44324 * 4 2 1 7 7 C 1.46504 * 119.99824 * 168.37523 * 6 4 2 8 8 C 1.46497 * 120.00163 * 348.36991 * 6 4 2 9 9 H 1.08999 * 110.77865 * 347.36387 * 8 6 4 10 10 C 1.55157 * 110.71837 * 110.60395 * 8 6 4 11 11 C 1.54917 * 101.58035 * 153.86774 * 10 8 6 12 12 N 1.47422 * 104.83075 * 322.98901 * 11 10 8 13 13 C 1.36938 * 125.64942 * 204.09579 * 12 11 10 14 14 H 1.07996 * 119.99908 * 5.19411 * 13 12 11 15 15 C 1.38812 * 119.99988 * 185.19546 * 13 12 11 16 16 N 1.31615 * 120.00147 * 5.31348 * 15 13 12 17 17 Si 1.86806 * 119.99804 * 185.32086 * 15 13 12 18 18 H 1.48501 * 109.47485 * 84.99679 * 17 15 13 19 19 H 1.48502 * 109.46944 * 204.99933 * 17 15 13 20 20 H 1.48503 * 109.47007 * 324.99540 * 17 15 13 21 21 C 1.47020 * 108.70472 * 24.12817 * 12 11 10 22 22 H 1.09005 * 109.47063 * 270.00277 * 1 2 3 23 23 H 1.09003 * 109.46965 * 29.99716 * 1 2 3 24 24 H 1.08999 * 109.47536 * 150.00064 * 1 2 3 25 25 H 1.09001 * 109.47560 * 272.19612 * 3 2 1 26 26 H 1.09010 * 109.46982 * 32.19076 * 3 2 1 27 27 H 1.09000 * 109.47383 * 152.19236 * 3 2 1 28 28 H 1.09008 * 109.46967 * 275.36685 * 7 6 4 29 29 H 1.08994 * 109.47360 * 35.36718 * 7 6 4 30 30 H 1.09002 * 109.47236 * 155.37240 * 7 6 4 31 31 H 1.08991 * 111.00576 * 35.79396 * 10 8 6 32 32 H 1.08999 * 111.00282 * 271.93349 * 10 8 6 33 33 H 1.09000 * 110.36793 * 81.82790 * 11 10 8 34 34 H 1.08999 * 110.36628 * 204.15380 * 11 10 8 35 35 H 0.96999 * 120.00070 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.88668 * 239.52452 * 21 12 11 37 37 H 1.09001 * 110.00965 * 118.42960 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5435 -2.2130 0.1740 6 7 3.4725 -1.1753 -0.1943 7 6 4.2415 -2.3971 0.0551 8 6 4.1532 0.0375 -0.6544 9 1 3.4322 0.7771 -1.0028 10 6 5.0445 0.6271 0.4705 11 6 6.1182 1.3858 -0.3490 12 7 6.3610 0.5373 -1.5298 13 6 7.5039 0.5274 -2.2841 14 1 8.3557 1.1182 -1.9814 15 6 7.5674 -0.2420 -3.4378 16 7 6.4974 -0.8790 -3.8638 17 14 9.1718 -0.3734 -4.3855 18 1 10.0098 -1.4471 -3.7939 19 1 8.8827 -0.6970 -5.8057 20 1 9.8984 0.9196 -4.3105 21 6 5.1726 -0.2960 -1.7640 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 2.3452 1.6030 -1.0269 26 1 1.6261 2.0182 0.5475 27 1 3.1664 1.1287 0.4794 28 1 4.4944 -2.4575 1.1137 29 1 3.6457 -3.2653 -0.2262 30 1 5.1568 -2.3774 -0.5365 31 1 5.4961 -0.1655 1.0669 32 1 4.4769 1.3125 1.0998 33 1 5.7425 2.3624 -0.6543 34 1 7.0328 1.4955 0.2338 35 1 6.5417 -1.4163 -4.6701 36 1 5.4435 -1.3507 -1.7137 37 1 4.7448 -0.0694 -2.7407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595825282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:16 Heat of formation + Delta-G solvation = 71.165249 kcal Electronic energy + Delta-G solvation = -18650.114381 eV Core-core repulsion = 15852.553169 eV Total energy + Delta-G solvation = -2797.561212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51569 -37.64390 -35.47214 -34.46256 -32.20665 -29.63830 -28.18845 -27.52960 -26.82964 -25.08390 -23.84686 -20.62978 -20.24452 -19.42399 -17.07851 -16.64246 -16.17470 -15.72668 -15.25683 -14.46339 -14.13289 -13.79749 -13.76848 -13.31344 -12.71124 -12.62411 -12.50088 -12.29196 -12.02459 -11.91355 -11.38014 -11.26410 -10.99867 -10.82982 -10.47364 -10.42353 -10.02743 -9.92886 -9.75142 -9.45837 -8.65984 -8.59093 -7.93637 -6.88497 -5.75297 -3.11210 2.91105 3.37944 3.42135 3.43203 3.44940 4.01103 4.46734 5.02580 5.17703 5.29417 5.32553 5.35894 5.45075 5.61343 5.68312 5.70056 5.77678 5.80848 5.87240 5.99959 6.07878 6.13599 6.33046 6.39747 6.54288 6.55053 6.78558 6.87699 7.19870 7.43813 7.54776 7.75743 8.19272 8.19572 8.85271 9.15596 9.76492 10.41156 11.35132 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036541 B = 0.006701 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.082943 B = 4177.716640 C = 4419.025730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.639 5.639 3 C 0.046 3.954 4 C 0.708 3.292 5 O -0.599 6.599 6 N -0.610 5.610 7 C 0.096 3.904 8 C 0.062 3.938 9 H 0.128 0.872 10 C -0.152 4.152 11 C 0.135 3.865 12 N -0.603 5.603 13 C -0.231 4.231 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.912 3.088 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.167 3.833 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.042 0.958 35 H 0.253 0.747 36 H 0.048 0.952 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 4.462 8.127 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.378 5.378 3 C -0.096 4.096 4 C 0.411 3.589 5 O -0.478 6.478 6 N -0.345 5.345 7 C -0.046 4.046 8 C -0.041 4.041 9 H 0.145 0.855 10 C -0.191 4.191 11 C 0.009 3.991 12 N -0.330 5.330 13 C -0.359 4.359 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.567 5.567 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.042 3.958 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.979 3.776 8.009 11.920 hybrid contribution 0.891 0.016 -0.598 1.074 sum -7.088 3.793 7.411 10.934 Atomic orbital electron populations 1.21425 0.78370 1.02525 1.01219 1.46813 1.06648 1.05063 1.79234 1.23008 0.99741 0.85459 1.01383 1.15888 0.81666 0.83465 0.77891 1.90854 1.67836 1.30861 1.58240 1.46875 1.05131 1.13141 1.69360 1.21586 0.97021 0.85909 1.00130 1.23972 0.96805 0.87175 0.96189 0.85504 1.23358 0.98090 1.00098 0.97570 1.21537 0.95549 0.93269 0.88795 1.44398 1.14829 1.43642 1.30176 1.19042 0.90094 1.24171 1.02584 0.90320 1.24819 0.97562 1.00205 0.97768 1.69934 1.26699 1.35502 1.24598 0.86137 0.82669 0.77813 0.79115 1.21546 1.21699 1.20720 1.21524 0.84958 0.95587 0.93716 0.93351 0.91676 0.90929 0.91975 0.92173 0.87283 0.93921 0.91265 0.89250 0.90964 0.91268 0.96113 0.93964 0.93635 0.93450 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.30 10.38 59.85 0.62 1.92 16 2 N -0.64 -9.53 3.27 -222.79 -0.73 -10.26 16 3 C 0.05 0.56 8.53 59.84 0.51 1.07 16 4 C 0.71 13.12 8.04 -86.92 -0.70 12.42 16 5 O -0.60 -12.79 15.68 5.28 0.08 -12.70 16 6 N -0.61 -11.08 2.87 -177.56 -0.51 -11.59 16 7 C 0.10 1.70 9.74 59.85 0.58 2.28 16 8 C 0.06 1.10 2.24 -66.10 -0.15 0.96 16 9 H 0.13 2.10 3.19 -83.80 -0.27 1.83 16 10 C -0.15 -2.44 6.07 -24.58 -0.15 -2.59 16 11 C 0.14 2.57 7.23 -2.53 -0.02 2.55 16 12 N -0.60 -14.64 3.39 -170.07 -0.58 -15.22 16 13 C -0.23 -6.21 10.27 -15.06 -0.15 -6.36 16 14 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 15 C -0.01 -0.19 5.46 -17.43 -0.10 -0.29 16 16 N -0.92 -26.48 10.41 55.49 0.58 -25.91 16 17 Si 0.91 21.69 29.56 -169.99 -5.02 16.66 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.17 3.88 4.97 -3.06 -0.02 3.86 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 24 H 0.07 0.96 7.57 -51.93 -0.39 0.57 16 25 H 0.06 0.76 6.69 -51.93 -0.35 0.42 16 26 H 0.06 0.57 8.09 -51.92 -0.42 0.15 16 27 H 0.11 1.42 2.38 -51.93 -0.12 1.29 16 28 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.07 1.24 7.45 -51.93 -0.39 0.85 16 30 H 0.09 1.70 5.54 -51.93 -0.29 1.41 16 31 H 0.07 1.20 7.71 -51.93 -0.40 0.80 16 32 H 0.07 0.90 6.31 -51.93 -0.33 0.57 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.05 1.21 5.05 -51.93 -0.26 0.95 16 37 H 0.06 1.56 7.10 -51.93 -0.37 1.19 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -32.06 283.32 -6.72 -38.77 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.24 Total: 0.16 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 0.43 Total: 15.81 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -1.24 Total: -62.98 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.06 -6.72 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595825282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.940 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds