Wall clock time and date at job start Mon Mar 30 2020 04:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00516 * 2 1 4 4 C 1.34778 * 119.99446 * 180.02562 * 2 1 3 5 5 O 1.21593 * 120.00356 * 350.43418 * 4 2 1 6 6 N 1.34775 * 119.99640 * 170.44324 * 4 2 1 7 7 C 1.46504 * 119.99824 * 168.37523 * 6 4 2 8 8 C 1.46497 * 120.00163 * 348.36991 * 6 4 2 9 9 H 1.08999 * 110.77865 * 347.36387 * 8 6 4 10 10 C 1.55157 * 110.71837 * 110.60395 * 8 6 4 11 11 C 1.54917 * 101.58035 * 153.86774 * 10 8 6 12 12 N 1.47422 * 104.83075 * 322.98901 * 11 10 8 13 13 C 1.36938 * 125.64942 * 204.09579 * 12 11 10 14 14 H 1.07996 * 119.99908 * 5.19411 * 13 12 11 15 15 C 1.38812 * 119.99988 * 185.19546 * 13 12 11 16 16 N 1.31615 * 120.00147 * 5.31348 * 15 13 12 17 17 Si 1.86806 * 119.99804 * 185.32086 * 15 13 12 18 18 H 1.48501 * 109.47485 * 84.99679 * 17 15 13 19 19 H 1.48502 * 109.46944 * 204.99933 * 17 15 13 20 20 H 1.48503 * 109.47007 * 324.99540 * 17 15 13 21 21 C 1.47020 * 108.70472 * 24.12817 * 12 11 10 22 22 H 1.09005 * 109.47063 * 270.00277 * 1 2 3 23 23 H 1.09003 * 109.46965 * 29.99716 * 1 2 3 24 24 H 1.08999 * 109.47536 * 150.00064 * 1 2 3 25 25 H 1.09001 * 109.47560 * 272.19612 * 3 2 1 26 26 H 1.09010 * 109.46982 * 32.19076 * 3 2 1 27 27 H 1.09000 * 109.47383 * 152.19236 * 3 2 1 28 28 H 1.09008 * 109.46967 * 275.36685 * 7 6 4 29 29 H 1.08994 * 109.47360 * 35.36718 * 7 6 4 30 30 H 1.09002 * 109.47236 * 155.37240 * 7 6 4 31 31 H 1.08991 * 111.00576 * 35.79396 * 10 8 6 32 32 H 1.08999 * 111.00282 * 271.93349 * 10 8 6 33 33 H 1.09000 * 110.36793 * 81.82790 * 11 10 8 34 34 H 1.08999 * 110.36628 * 204.15380 * 11 10 8 35 35 H 0.96999 * 120.00070 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.88668 * 239.52452 * 21 12 11 37 37 H 1.09001 * 110.00965 * 118.42960 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5435 -2.2130 0.1740 6 7 3.4725 -1.1753 -0.1943 7 6 4.2415 -2.3971 0.0551 8 6 4.1532 0.0375 -0.6544 9 1 3.4322 0.7771 -1.0028 10 6 5.0445 0.6271 0.4705 11 6 6.1182 1.3858 -0.3490 12 7 6.3610 0.5373 -1.5298 13 6 7.5039 0.5274 -2.2841 14 1 8.3557 1.1182 -1.9814 15 6 7.5674 -0.2420 -3.4378 16 7 6.4974 -0.8790 -3.8638 17 14 9.1718 -0.3734 -4.3855 18 1 10.0098 -1.4471 -3.7939 19 1 8.8827 -0.6970 -5.8057 20 1 9.8984 0.9196 -4.3105 21 6 5.1726 -0.2960 -1.7640 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 2.3452 1.6030 -1.0269 26 1 1.6261 2.0182 0.5475 27 1 3.1664 1.1287 0.4794 28 1 4.4944 -2.4575 1.1137 29 1 3.6457 -3.2653 -0.2262 30 1 5.1568 -2.3774 -0.5365 31 1 5.4961 -0.1655 1.0669 32 1 4.4769 1.3125 1.0998 33 1 5.7425 2.3624 -0.6543 34 1 7.0328 1.4955 0.2338 35 1 6.5417 -1.4163 -4.6701 36 1 5.4435 -1.3507 -1.7137 37 1 4.7448 -0.0694 -2.7407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595825282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:16 Heat of formation + Delta-G solvation = 49.252128 kcal Electronic energy + Delta-G solvation = -18651.064606 eV Core-core repulsion = 15852.553169 eV Total energy + Delta-G solvation = -2798.511437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88929 -39.20800 -36.75291 -36.05872 -34.05166 -31.23174 -29.50197 -29.15090 -28.10733 -26.68026 -25.33982 -22.11881 -21.94903 -20.75311 -18.91940 -18.04580 -17.61428 -17.04695 -16.83479 -16.13736 -15.71204 -15.14533 -15.02142 -14.70791 -14.34621 -14.08081 -13.95397 -13.68300 -13.40750 -13.09994 -13.00279 -12.78565 -12.74891 -12.50105 -12.17327 -11.96610 -11.78612 -11.56407 -11.42631 -10.93903 -10.60260 -9.93359 -9.24378 -8.85704 -7.82217 -5.19105 1.47560 1.49083 1.57073 1.64664 2.02257 2.50791 2.75233 3.36137 3.75631 3.84851 3.87263 4.09177 4.22378 4.36469 4.45494 4.47570 4.60285 4.67282 4.70843 4.76555 4.80036 4.87140 4.94232 5.04625 5.10293 5.26377 5.37884 5.50505 5.56294 5.64648 5.80342 5.94552 6.21397 6.83521 7.10959 7.46458 7.79854 8.43019 9.26212 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036541 B = 0.006701 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.082943 B = 4177.716640 C = 4419.025730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.637 5.637 3 C 0.041 3.959 4 C 0.699 3.301 5 O -0.635 6.635 6 N -0.614 5.614 7 C 0.102 3.898 8 C 0.077 3.923 9 H 0.149 0.851 10 C -0.133 4.133 11 C 0.128 3.872 12 N -0.625 5.625 13 C -0.237 4.237 14 H 0.086 0.914 15 C -0.067 4.067 16 N -0.951 5.951 17 Si 0.975 3.025 18 H -0.288 1.288 19 H -0.299 1.299 20 H -0.267 1.267 21 C 0.176 3.824 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.244 0.756 36 H 0.015 0.985 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 6.635 9.762 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.374 5.374 3 C -0.100 4.100 4 C 0.402 3.598 5 O -0.517 6.517 6 N -0.349 5.349 7 C -0.041 4.041 8 C -0.026 4.026 9 H 0.165 0.835 10 C -0.172 4.172 11 C 0.003 3.997 12 N -0.352 5.352 13 C -0.366 4.366 14 H 0.104 0.896 15 C -0.260 4.260 16 N -0.600 5.600 17 Si 0.803 3.197 18 H -0.215 1.215 19 H -0.226 1.226 20 H -0.192 1.192 21 C 0.050 3.950 22 H 0.081 0.919 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -8.396 6.015 9.681 14.156 hybrid contribution 0.989 -0.605 -1.076 1.582 sum -7.406 5.411 8.605 12.577 Atomic orbital electron populations 1.21640 0.76642 1.03254 1.02381 1.46990 1.07825 1.04776 1.77822 1.23084 0.99973 0.84894 1.02002 1.16125 0.81497 0.84213 0.77942 1.90823 1.68387 1.32563 1.59931 1.46894 1.05388 1.13189 1.69455 1.21481 0.95890 0.85832 1.00916 1.23925 0.96110 0.87388 0.95221 0.83468 1.23289 0.96878 1.00274 0.96777 1.21797 0.97007 0.93510 0.87338 1.44691 1.14382 1.44674 1.31463 1.19456 0.91293 1.23270 1.02566 0.89606 1.25616 1.00448 1.00706 0.99183 1.70174 1.28533 1.36565 1.24710 0.85147 0.79253 0.78147 0.77111 1.21502 1.22582 1.19156 1.21228 0.85952 0.93837 0.93943 0.91948 0.88256 0.92913 0.91792 0.88100 0.87942 0.91845 0.92222 0.91265 0.91469 0.86684 0.94258 0.93261 0.94669 0.96695 0.96698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.19 10.38 127.77 1.33 3.51 16 2 N -0.64 -17.25 3.27 -977.04 -3.20 -20.45 16 3 C 0.04 0.82 8.53 127.77 1.09 1.91 16 4 C 0.70 25.19 8.04 179.05 1.44 26.62 16 5 O -0.63 -27.10 15.68 -4.01 -0.06 -27.16 16 6 N -0.61 -21.95 2.87 -833.92 -2.40 -24.34 16 7 C 0.10 3.65 9.74 127.77 1.24 4.90 16 8 C 0.08 2.63 2.24 46.18 0.10 2.73 16 9 H 0.15 4.52 3.19 -32.32 -0.10 4.42 16 10 C -0.13 -3.87 6.07 31.99 0.19 -3.67 16 11 C 0.13 4.57 7.23 86.86 0.63 5.20 16 12 N -0.63 -30.28 3.39 -691.97 -2.35 -32.63 16 13 C -0.24 -12.78 10.27 84.03 0.86 -11.91 16 14 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 15 C -0.07 -3.72 5.46 84.86 0.46 -3.26 16 16 N -0.95 -56.88 10.41 21.65 0.23 -56.66 16 17 Si 0.97 45.24 29.56 68.60 2.03 47.26 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 C 0.18 8.36 4.97 86.73 0.43 8.79 16 22 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.10 1.42 8.07 -2.39 -0.02 1.40 16 24 H 0.05 1.34 7.57 -2.39 -0.02 1.32 16 25 H 0.06 1.32 6.69 -2.39 -0.02 1.31 16 26 H 0.10 1.30 8.09 -2.38 -0.02 1.28 16 27 H 0.10 2.19 2.38 -2.39 -0.01 2.18 16 28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.06 2.22 7.45 -2.39 -0.02 2.20 16 30 H 0.07 2.76 5.54 -2.39 -0.01 2.75 16 31 H 0.07 2.05 7.71 -2.39 -0.02 2.03 16 32 H 0.12 2.36 6.31 -2.39 -0.02 2.35 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.02 0.81 5.05 -2.38 -0.01 0.80 16 37 H 0.01 0.83 7.10 -2.39 -0.02 0.81 16 Total: -1.00 -72.13 283.32 3.00 -69.12 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.97 Total: 10.03 kcal Atomic # 6 Polarization: 27.04 SS G_CDS: 7.78 Total: 34.82 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -7.72 Total: -134.08 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.06 Total: -27.16 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.13 3.00 -69.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595825282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.375 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds