Wall clock time and date at job start Mon Mar 30 2020 03:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99904 * 2 1 4 4 H 1.08993 * 109.47187 * 30.00461 * 3 2 1 5 5 C 1.50698 * 109.47038 * 269.99723 * 3 2 1 6 6 O 1.21293 * 120.00006 * 355.00614 * 5 3 2 7 7 N 1.34777 * 119.99538 * 174.99957 * 5 3 2 8 8 C 1.37104 * 119.99773 * 179.72591 * 7 5 3 9 9 H 1.08002 * 119.99671 * 0.27660 * 8 7 5 10 10 C 1.38950 * 120.00030 * 180.27703 * 8 7 5 11 11 N 1.31413 * 119.99930 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99918 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47112 * 89.99702 * 12 10 8 14 14 H 1.48498 * 109.47011 * 209.99970 * 12 10 8 15 15 H 1.48494 * 109.47201 * 329.99943 * 12 10 8 16 16 C 1.53001 * 109.46552 * 149.99986 * 3 2 1 17 17 C 1.52999 * 109.47357 * 60.00131 * 16 3 2 18 18 C 1.53000 * 109.47371 * 179.97438 * 17 16 3 19 19 C 1.52998 * 109.46882 * 60.00021 * 18 17 16 20 20 C 1.53006 * 109.47219 * 299.99866 * 19 18 17 21 21 C 1.52998 * 109.47212 * 299.99959 * 16 3 2 22 22 H 1.09000 * 109.47730 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47271 * 300.00389 * 1 2 3 24 24 H 1.09007 * 109.47003 * 59.99775 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 7 5 3 26 26 H 0.96999 * 119.99993 * 179.97438 * 11 10 8 27 27 H 1.08999 * 109.46748 * 179.97438 * 16 3 2 28 28 H 1.09005 * 109.47164 * 299.99914 * 17 16 3 29 29 H 1.09003 * 109.47078 * 59.99553 * 17 16 3 30 30 H 1.08999 * 109.47064 * 299.99876 * 18 17 16 31 31 H 1.09001 * 109.47335 * 180.02562 * 18 17 16 32 32 H 1.09003 * 109.46784 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.47389 * 60.00054 * 19 18 17 34 34 H 1.08999 * 109.47093 * 300.00369 * 20 19 18 35 35 H 1.08998 * 109.46935 * 179.97438 * 20 19 18 36 36 H 1.08993 * 109.46988 * 299.99868 * 21 16 3 37 37 H 1.08999 * 109.47389 * 60.00239 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3414 7 7 2.6589 3.0124 -1.6685 8 6 2.8502 3.4281 -2.9609 9 1 2.6406 2.7568 -3.7806 10 6 3.3137 4.7129 -3.2161 11 7 3.4975 5.1111 -4.4549 12 14 3.6769 5.8736 -1.7983 13 1 5.0922 5.7140 -1.3781 14 1 3.4446 7.2743 -2.2333 15 1 2.7827 5.5551 -0.6564 16 6 3.3589 1.2632 0.7213 17 6 4.2927 0.2891 0.0000 18 6 5.6415 0.2473 0.7209 19 6 5.4345 -0.2183 2.1636 20 6 4.5007 0.7557 2.8849 21 6 3.1514 0.7972 2.1637 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.8474 3.6152 -0.9323 26 1 3.8208 6.0081 -4.6331 27 1 3.8024 2.2588 0.7209 28 1 3.8493 -0.7067 0.0000 29 1 4.4404 0.6211 -1.0277 30 1 6.0847 1.2431 0.7206 31 1 6.3069 -0.4463 0.2068 32 1 6.3954 -0.2477 2.6773 33 1 4.9913 -1.2142 2.1639 34 1 4.9439 1.7515 2.8845 35 1 4.3529 0.4237 3.9125 36 1 2.4862 1.4911 2.6776 37 1 2.7080 -0.1985 2.1638 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597030798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:02 Heat of formation + Delta-G solvation = -106.141371 kcal Electronic energy + Delta-G solvation = -18417.068796 eV Core-core repulsion = 15579.526240 eV Total energy + Delta-G solvation = -2837.542555 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63263 -37.59737 -36.55120 -33.90858 -32.07581 -31.29995 -30.54826 -27.14630 -26.00487 -24.04041 -22.44234 -21.50637 -19.60307 -19.19123 -18.42730 -16.28115 -15.96450 -15.70639 -14.93202 -14.48450 -14.05785 -13.96978 -13.83942 -13.39691 -13.25292 -13.01212 -12.59634 -12.21030 -11.99106 -11.78242 -11.58713 -11.26816 -11.04448 -10.91742 -10.82919 -10.61842 -10.26890 -10.02560 -9.92008 -9.86059 -9.75967 -9.55778 -8.18641 -8.18106 -6.31732 -3.82776 3.01320 3.05866 3.14081 3.67812 4.04857 4.09688 4.62436 4.81847 4.89292 4.95708 5.19359 5.29714 5.43012 5.50038 5.53825 5.61003 5.62979 5.71677 5.73424 5.78209 5.85997 5.95356 6.00657 6.07784 6.14640 6.29418 6.32868 6.37974 6.44454 6.67265 6.78737 7.39515 7.59440 8.13795 8.59784 8.94896 9.41926 9.82459 10.81435 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.008516 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.432165 B = 3287.148125 C = 3943.341852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.083 3.917 4 H 0.069 0.931 5 C 0.432 3.568 6 O -0.562 6.562 7 N -0.587 5.587 8 C -0.305 4.305 9 H 0.119 0.881 10 C 0.043 3.957 11 N -0.881 5.881 12 Si 0.876 3.124 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.269 1.269 16 C -0.077 4.077 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.111 4.111 22 H 0.082 0.918 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.369 0.631 26 H 0.273 0.727 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -5.746 15.949 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.021 3.979 4 H 0.086 0.914 5 C 0.218 3.782 6 O -0.444 6.444 7 N -0.228 5.228 8 C -0.433 4.433 9 H 0.137 0.863 10 C -0.160 4.160 11 N -0.521 5.521 12 Si 0.702 3.298 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.195 1.195 16 C -0.096 4.096 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.148 4.148 22 H 0.100 0.900 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.202 0.798 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.476 -6.273 15.162 16.415 hybrid contribution 0.066 1.431 0.893 1.688 sum 0.542 -4.843 16.055 16.778 Atomic orbital electron populations 1.22751 0.81629 1.02299 0.99740 1.87889 1.19126 1.25614 1.94594 1.22030 0.95578 0.85899 0.94410 0.91365 1.20377 0.84154 0.82989 0.90710 1.90567 1.54412 1.53901 1.45540 1.42274 1.60126 1.12221 1.08166 1.19441 1.41589 0.99045 0.83246 0.86302 1.25026 0.97518 0.96981 0.96511 1.69621 1.45085 1.19329 1.18032 0.86724 0.79323 0.81590 0.82150 1.19454 1.20111 1.19494 1.21256 0.93363 1.00320 0.94620 1.21484 0.93962 1.00050 0.99294 1.21553 0.97642 1.01244 0.95282 1.21533 0.98865 0.99175 0.95973 1.21537 0.95862 0.99705 0.98460 1.21549 0.96852 1.02149 0.94298 0.89964 0.94767 0.93591 0.79785 0.91613 0.90248 0.91053 0.91125 0.92189 0.92150 0.92582 0.92054 0.92169 0.92341 0.92448 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.81 101.05 1.09 1.57 16 2 O -0.36 -6.36 8.54 -55.09 -0.47 -6.83 16 3 C 0.08 1.48 2.26 -27.88 -0.06 1.42 16 4 H 0.07 1.08 7.79 -51.93 -0.40 0.67 16 5 C 0.43 10.10 5.82 -10.99 -0.06 10.04 16 6 O -0.56 -15.63 16.08 -14.31 -0.23 -15.86 16 7 N -0.59 -14.18 5.05 -10.96 -0.06 -14.24 16 8 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 9 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 10 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 11 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 12 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 15 H -0.27 -5.44 6.52 56.52 0.37 -5.08 16 16 C -0.08 -1.18 2.04 -90.62 -0.18 -1.37 16 17 C -0.11 -1.81 4.81 -26.73 -0.13 -1.94 16 18 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 19 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 20 C -0.12 -1.29 5.93 -26.70 -0.16 -1.45 16 21 C -0.11 -1.38 5.06 -26.71 -0.14 -1.51 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 24 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.37 7.89 5.54 -40.82 -0.23 7.66 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 27 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 28 H 0.07 1.21 7.68 -51.93 -0.40 0.81 16 29 H 0.07 1.40 7.22 -51.93 -0.37 1.02 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -32.12 297.22 -6.42 -38.53 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.99 Total: 8.46 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.21 Total: -4.23 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.72 Total: -39.25 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.70 Total: -22.68 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.12 -6.42 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597030798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.606 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds