Wall clock time and date at job start Mon Mar 30 2020 03:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99904 * 2 1 4 4 H 1.08993 * 109.47187 * 30.00461 * 3 2 1 5 5 C 1.50698 * 109.47038 * 269.99723 * 3 2 1 6 6 O 1.21293 * 120.00006 * 355.00614 * 5 3 2 7 7 N 1.34777 * 119.99538 * 174.99957 * 5 3 2 8 8 C 1.37104 * 119.99773 * 179.72591 * 7 5 3 9 9 H 1.08002 * 119.99671 * 0.27660 * 8 7 5 10 10 C 1.38950 * 120.00030 * 180.27703 * 8 7 5 11 11 N 1.31413 * 119.99930 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99918 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47112 * 89.99702 * 12 10 8 14 14 H 1.48498 * 109.47011 * 209.99970 * 12 10 8 15 15 H 1.48494 * 109.47201 * 329.99943 * 12 10 8 16 16 C 1.53001 * 109.46552 * 149.99986 * 3 2 1 17 17 C 1.52999 * 109.47357 * 60.00131 * 16 3 2 18 18 C 1.53000 * 109.47371 * 179.97438 * 17 16 3 19 19 C 1.52998 * 109.46882 * 60.00021 * 18 17 16 20 20 C 1.53006 * 109.47219 * 299.99866 * 19 18 17 21 21 C 1.52998 * 109.47212 * 299.99959 * 16 3 2 22 22 H 1.09000 * 109.47730 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47271 * 300.00389 * 1 2 3 24 24 H 1.09007 * 109.47003 * 59.99775 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 7 5 3 26 26 H 0.96999 * 119.99993 * 179.97438 * 11 10 8 27 27 H 1.08999 * 109.46748 * 179.97438 * 16 3 2 28 28 H 1.09005 * 109.47164 * 299.99914 * 17 16 3 29 29 H 1.09003 * 109.47078 * 59.99553 * 17 16 3 30 30 H 1.08999 * 109.47064 * 299.99876 * 18 17 16 31 31 H 1.09001 * 109.47335 * 180.02562 * 18 17 16 32 32 H 1.09003 * 109.46784 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.47389 * 60.00054 * 19 18 17 34 34 H 1.08999 * 109.47093 * 300.00369 * 20 19 18 35 35 H 1.08998 * 109.46935 * 179.97438 * 20 19 18 36 36 H 1.08993 * 109.46988 * 299.99868 * 21 16 3 37 37 H 1.08999 * 109.47389 * 60.00239 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3414 7 7 2.6589 3.0124 -1.6685 8 6 2.8502 3.4281 -2.9609 9 1 2.6406 2.7568 -3.7806 10 6 3.3137 4.7129 -3.2161 11 7 3.4975 5.1111 -4.4549 12 14 3.6769 5.8736 -1.7983 13 1 5.0922 5.7140 -1.3781 14 1 3.4446 7.2743 -2.2333 15 1 2.7827 5.5551 -0.6564 16 6 3.3589 1.2632 0.7213 17 6 4.2927 0.2891 0.0000 18 6 5.6415 0.2473 0.7209 19 6 5.4345 -0.2183 2.1636 20 6 4.5007 0.7557 2.8849 21 6 3.1514 0.7972 2.1637 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.8474 3.6152 -0.9323 26 1 3.8208 6.0081 -4.6331 27 1 3.8024 2.2588 0.7209 28 1 3.8493 -0.7067 0.0000 29 1 4.4404 0.6211 -1.0277 30 1 6.0847 1.2431 0.7206 31 1 6.3069 -0.4463 0.2068 32 1 6.3954 -0.2477 2.6773 33 1 4.9913 -1.2142 2.1639 34 1 4.9439 1.7515 2.8845 35 1 4.3529 0.4237 3.9125 36 1 2.4862 1.4911 2.6776 37 1 2.7080 -0.1985 2.1638 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597030798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:02 Heat of formation + Delta-G solvation = -128.060358 kcal Electronic energy + Delta-G solvation = -18418.019274 eV Core-core repulsion = 15579.526240 eV Total energy + Delta-G solvation = -2838.493034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16799 -39.07684 -37.94238 -35.99055 -33.92027 -32.77282 -31.58236 -28.56048 -27.48122 -25.78544 -23.52428 -22.73743 -21.24219 -20.53625 -20.33404 -17.98603 -17.46851 -16.99649 -16.76257 -15.71808 -15.59835 -15.24444 -15.02022 -14.89385 -14.82712 -14.46722 -14.21547 -13.95362 -13.12040 -13.05339 -12.93353 -12.72698 -12.45973 -12.25507 -12.03657 -11.94172 -11.90720 -11.55808 -11.35534 -11.29280 -11.04398 -10.86173 -10.28927 -9.98601 -8.44792 -6.06125 1.26640 1.32354 1.41404 1.86053 2.19922 2.61436 3.02435 3.10567 3.68104 3.76431 3.90613 4.10058 4.15299 4.37297 4.42612 4.46252 4.54326 4.59057 4.64060 4.70043 4.71556 4.82158 4.83814 5.06333 5.22088 5.31175 5.34331 5.36258 5.42352 5.47578 5.50350 5.66443 5.89001 6.11609 6.55744 6.83567 7.33654 7.89737 8.72896 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.008516 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.432165 B = 3287.148125 C = 3943.341852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.371 6.371 3 C 0.091 3.909 4 H 0.103 0.897 5 C 0.430 3.570 6 O -0.618 6.618 7 N -0.584 5.584 8 C -0.331 4.331 9 H 0.053 0.947 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.958 3.042 13 H -0.253 1.253 14 H -0.271 1.271 15 H -0.230 1.230 16 C -0.076 4.076 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.103 4.103 22 H 0.103 0.897 23 H 0.070 0.930 24 H 0.017 0.983 25 H 0.388 0.612 26 H 0.280 0.720 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -4.664 20.667 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C 0.030 3.970 4 H 0.121 0.879 5 C 0.218 3.782 6 O -0.503 6.503 7 N -0.226 5.226 8 C -0.460 4.460 9 H 0.071 0.929 10 C -0.211 4.211 11 N -0.572 5.572 12 Si 0.777 3.223 13 H -0.178 1.178 14 H -0.196 1.196 15 H -0.154 1.154 16 C -0.095 4.095 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.141 4.141 22 H 0.121 0.879 23 H 0.089 0.911 24 H 0.036 0.964 25 H 0.224 0.776 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.749 -5.207 19.903 20.587 hybrid contribution -0.071 0.968 -0.735 1.217 sum 0.679 -4.239 19.168 19.643 Atomic orbital electron populations 1.22980 0.80060 1.03946 1.00064 1.87891 1.20962 1.25645 1.94306 1.22091 0.98004 0.86629 0.90305 0.87906 1.21678 0.81603 0.81939 0.92990 1.90533 1.56195 1.55289 1.48242 1.42064 1.60550 1.13019 1.06942 1.18998 1.43990 0.99137 0.83851 0.92906 1.26105 0.96041 0.98523 1.00381 1.69801 1.45711 1.20354 1.21333 0.85462 0.80502 0.77847 0.78442 1.17761 1.19605 1.15368 1.21343 0.91264 1.00478 0.96407 1.21411 0.96366 0.99536 0.97283 1.21540 0.95547 1.01578 0.96798 1.21525 1.00234 0.99272 0.94177 1.21554 0.94522 0.99964 0.99259 1.21518 0.98446 1.02303 0.91815 0.87909 0.91117 0.96381 0.77623 0.91024 0.89457 0.92361 0.96012 0.91970 0.92262 0.90631 0.92135 0.91463 0.89971 0.90156 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.81 113.37 1.23 1.94 16 2 O -0.37 -12.89 8.54 -129.99 -1.11 -14.00 16 3 C 0.09 3.14 2.26 29.85 0.07 3.21 16 4 H 0.10 2.85 7.79 -2.39 -0.02 2.84 16 5 C 0.43 20.66 5.82 87.66 0.51 21.17 16 6 O -0.62 -36.58 16.08 15.92 0.26 -36.32 16 7 N -0.58 -28.55 5.05 -306.98 -1.55 -30.10 16 8 C -0.33 -19.83 10.16 84.04 0.85 -18.98 16 9 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 10 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 11 N -0.93 -56.65 13.96 21.66 0.30 -56.34 16 12 Si 0.96 38.82 27.74 68.60 1.90 40.73 16 13 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 14 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 16 C -0.08 -2.18 2.04 -10.79 -0.02 -2.20 16 17 C -0.11 -3.56 4.81 30.59 0.15 -3.42 16 18 C -0.12 -2.97 5.92 30.59 0.18 -2.79 16 19 C -0.11 -2.20 5.92 30.60 0.18 -2.02 16 20 C -0.12 -1.98 5.93 30.61 0.18 -1.79 16 21 C -0.10 -2.13 5.06 30.61 0.15 -1.98 16 22 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 24 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.39 15.79 5.54 -92.71 -0.51 15.27 16 26 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.09 2.37 7.92 -2.39 -0.02 2.35 16 28 H 0.06 2.02 7.68 -2.38 -0.02 2.00 16 29 H 0.02 0.89 7.22 -2.39 -0.02 0.88 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.49 7.68 -2.39 -0.02 1.47 16 Total: -1.00 -77.08 297.22 4.22 -72.87 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.47 Total: 30.22 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 3.95 Total: -7.04 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -1.25 Total: -86.45 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -0.85 Total: -50.32 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.73 kcal Total: -77.08 4.22 -72.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597030798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.195 kcal (2) G-P(sol) polarization free energy of solvation -77.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds