Wall clock time and date at job start Mon Mar 30 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34784 * 120.00100 * 2 1 4 4 O 1.21273 * 119.99934 * 174.96070 * 3 2 1 5 5 C 1.50695 * 119.99607 * 354.96023 * 3 2 1 6 6 C 1.53002 * 109.46968 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47201 * 180.02562 * 6 5 3 8 8 C 1.50704 * 109.47267 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99501 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00216 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99876 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00108 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46826 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47049 * 119.99879 * 12 10 8 15 15 H 1.48495 * 109.46796 * 239.99768 * 12 10 8 16 16 C 1.46504 * 120.00224 * 180.02562 * 2 1 3 17 17 C 1.52997 * 115.55113 * 98.99997 * 16 2 1 18 18 O 1.42898 * 109.47495 * 302.13823 * 17 16 2 19 19 C 1.52998 * 117.49401 * 313.29323 * 16 2 1 20 20 C 1.52997 * 117.49351 * 244.67395 * 16 2 1 21 21 H 1.09000 * 109.47019 * 90.00071 * 1 2 3 22 22 H 1.08994 * 109.46950 * 209.99506 * 1 2 3 23 23 H 1.09002 * 109.47283 * 330.00071 * 1 2 3 24 24 H 1.09010 * 109.47365 * 60.00548 * 5 3 2 25 25 H 1.08993 * 109.47567 * 300.00094 * 5 3 2 26 26 H 1.08993 * 109.47384 * 300.00611 * 6 5 3 27 27 H 1.09000 * 109.47016 * 60.00405 * 6 5 3 28 28 H 1.09003 * 109.47166 * 300.00462 * 7 6 5 29 29 H 1.08997 * 109.47490 * 60.00383 * 7 6 5 30 30 H 0.96998 * 119.99810 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.47062 * 62.14375 * 17 16 2 32 32 H 1.09008 * 109.46833 * 182.13526 * 17 16 2 33 33 H 0.96694 * 114.00058 * 179.97438 * 18 17 16 34 34 H 1.09005 * 117.49904 * 0.02562 * 19 16 2 35 35 H 1.09001 * 117.49839 * 145.01965 * 19 16 2 36 36 H 1.09003 * 117.49507 * 214.97107 * 20 16 2 37 37 H 1.09005 * 117.50449 * 359.97235 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3481 1.1692 0.0923 5 6 1.3897 2.4698 -0.1147 6 6 2.3830 3.6333 -0.0895 7 6 1.6224 4.9557 -0.2052 8 6 2.6007 6.1018 -0.1810 9 1 3.6592 5.9063 -0.0924 10 6 2.1446 7.3997 -0.2720 11 7 0.8556 7.6377 -0.3804 12 14 3.3572 8.8203 -0.2413 13 1 4.7382 8.2895 -0.1126 14 1 3.2407 9.5979 -1.5011 15 1 3.0567 9.7026 0.9146 16 6 2.1975 -1.2687 -0.0006 17 6 2.7145 -1.7316 -1.3641 18 8 1.6183 -1.8548 -2.2725 19 6 1.7448 -2.3462 0.9868 20 6 3.0535 -1.5907 1.2260 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3634 0.8900 0.5138 24 1 0.6973 2.5655 0.7218 25 1 0.8327 2.4873 -1.0513 26 1 2.9397 3.6155 0.8474 27 1 3.0757 3.5378 -0.9256 28 1 1.0653 4.9737 -1.1420 29 1 0.9299 5.0511 0.6311 30 1 0.5347 8.5508 -0.4448 31 1 3.4259 -1.0014 -1.7500 32 1 3.2078 -2.6977 -1.2568 33 1 1.8729 -2.1449 -3.1591 34 1 0.9016 -2.1113 1.6364 35 1 1.8150 -3.3853 0.6650 36 1 3.9848 -2.1327 1.0616 37 1 3.0720 -0.8583 2.0332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597644359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:33 Heat of formation + Delta-G solvation = -95.080449 kcal Electronic energy + Delta-G solvation = -17428.486685 eV Core-core repulsion = 14591.423767 eV Total energy + Delta-G solvation = -2837.062918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25645 -38.87411 -36.87586 -36.12081 -35.09576 -33.87552 -29.76672 -28.31200 -27.31386 -25.93473 -23.44927 -22.86901 -21.41262 -19.54376 -18.49079 -18.31090 -17.67098 -17.37406 -17.07812 -16.45209 -15.96766 -15.54955 -14.93259 -14.77096 -14.32957 -14.02178 -13.91721 -13.79194 -13.34519 -13.11171 -12.91468 -12.65784 -12.50802 -12.43528 -12.33358 -11.73652 -11.57921 -11.47227 -11.33355 -11.23335 -10.96536 -10.55411 -10.54374 -9.67122 -8.20832 -6.31048 1.39247 1.39290 1.53439 1.61769 1.92629 2.41396 2.57049 3.12039 3.21603 3.71320 3.79792 3.89749 4.14873 4.18057 4.21223 4.23401 4.43584 4.50119 4.60618 4.68616 4.75495 4.79315 4.92442 4.95580 4.98040 5.07736 5.14099 5.17146 5.52180 5.67611 5.73175 5.84956 6.25565 6.38130 6.84069 6.84221 7.20341 7.37719 8.91051 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043934 B = 0.004276 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.161475 B = 6547.152837 C = 6658.824592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.583 5.583 3 C 0.513 3.487 4 O -0.575 6.575 5 C -0.127 4.127 6 C -0.080 4.080 7 C 0.026 3.974 8 C -0.547 4.547 9 H 0.051 0.949 10 C 0.003 3.997 11 N -0.929 5.929 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.275 1.275 15 H -0.274 1.274 16 C 0.067 3.933 17 C 0.111 3.889 18 O -0.579 6.579 19 C -0.139 4.139 20 C -0.161 4.161 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.000 1.000 29 H 0.001 0.999 30 H 0.265 0.735 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -22.836 0.054 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.315 5.315 3 C 0.303 3.697 4 O -0.454 6.454 5 C -0.167 4.167 6 C -0.118 4.118 7 C -0.011 4.011 8 C -0.585 4.585 9 H 0.069 0.931 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.200 1.200 16 C -0.019 4.019 17 C 0.032 3.968 18 O -0.387 6.387 19 C -0.176 4.176 20 C -0.199 4.199 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.242 -22.511 0.604 22.554 hybrid contribution 0.782 0.991 -0.576 1.387 sum -0.460 -21.520 0.029 21.525 Atomic orbital electron populations 1.21961 0.77274 1.04162 1.02851 1.47300 1.07753 1.03507 1.72922 1.21106 0.87670 0.86033 0.74882 1.90626 1.16009 1.87891 1.50896 1.21696 0.99348 0.90637 1.04973 1.21150 0.96959 0.93497 1.00175 1.19017 0.94931 0.91660 0.95460 1.21702 0.93891 0.92608 1.50304 0.93094 1.25915 0.97119 1.01797 0.94612 1.70079 1.14583 1.21098 1.51200 0.85428 0.79067 0.78678 0.78063 1.19241 1.20002 1.19972 1.20859 1.02783 0.86588 0.91718 1.21771 0.87921 0.99564 0.87503 1.86431 1.34695 1.91579 1.25972 1.23427 0.97834 0.97007 0.99329 1.23218 0.96671 1.02703 0.97285 0.92062 0.89166 0.90162 0.87637 0.88157 0.94030 0.94294 0.98202 0.98016 0.92631 0.95330 0.89752 0.75446 0.87424 0.85370 0.86637 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.17 127.77 1.30 2.90 16 2 N -0.58 -15.77 3.02 -799.40 -2.41 -18.18 16 3 C 0.51 18.04 7.59 87.65 0.67 18.70 16 4 O -0.57 -24.38 15.52 -3.01 -0.05 -24.43 16 5 C -0.13 -4.52 4.37 29.85 0.13 -4.39 16 6 C -0.08 -3.68 4.44 30.59 0.14 -3.54 16 7 C 0.03 1.44 4.97 29.85 0.15 1.59 16 8 C -0.55 -32.83 9.11 25.60 0.23 -32.60 16 9 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 10 C 0.00 0.21 5.46 84.65 0.46 0.67 16 11 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 12 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 16 C 0.07 1.54 1.51 3.60 0.01 1.55 16 17 C 0.11 2.32 7.10 71.98 0.51 2.83 16 18 O -0.58 -11.33 13.64 -148.98 -2.03 -13.37 16 19 C -0.14 -2.19 9.49 30.59 0.29 -1.90 16 20 C -0.16 -3.40 9.52 30.59 0.29 -3.11 16 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.09 1.39 6.70 -2.39 -0.02 1.38 16 23 H 0.08 1.52 6.48 -2.39 -0.02 1.50 16 24 H 0.11 3.33 7.25 -2.38 -0.02 3.32 16 25 H 0.10 3.31 8.14 -2.39 -0.02 3.30 16 26 H 0.04 1.99 8.10 -2.39 -0.02 1.97 16 27 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.21 8.11 -2.38 -0.02 1.20 16 33 H 0.40 4.20 9.12 -74.06 -0.68 3.52 16 34 H 0.11 1.55 7.30 -2.38 -0.02 1.53 16 35 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -75.70 312.41 2.37 -73.33 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.37 Total: 8.99 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.17 Total: -17.31 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -2.13 Total: -74.97 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -2.08 Total: -37.79 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -75.70 2.37 -73.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597644359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.749 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds