Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99534 * 2 1 4 4 H 1.48498 * 109.47260 * 239.99985 * 3 2 1 5 5 H 1.48505 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46827 * 120.00297 * 3 2 1 7 7 C 1.37875 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46756 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47220 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46747 * 304.99892 * 11 10 9 13 13 N 1.46904 * 109.47177 * 64.99660 * 11 10 9 14 14 C 1.50693 * 109.47536 * 184.99909 * 11 10 9 15 15 O 1.21279 * 120.00012 * 259.99752 * 14 11 10 16 16 N 1.34781 * 120.00151 * 79.99415 * 14 11 10 17 17 N 1.36598 * 119.99755 * 174.99423 * 16 14 11 18 18 C 1.48532 * 110.99837 * 117.91915 * 17 16 14 19 19 C 1.54940 * 103.22730 * 159.71645 * 18 17 16 20 20 C 1.54592 * 102.91977 * 322.58502 * 19 18 17 21 21 C 1.47908 * 110.99946 * 235.31173 * 17 16 14 22 22 H 0.96993 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47379 * 60.00454 * 9 7 2 24 24 H 1.08996 * 109.47223 * 299.99827 * 9 7 2 25 25 H 1.08999 * 109.47598 * 59.99925 * 10 9 7 26 26 H 1.09001 * 109.47238 * 299.99512 * 10 9 7 27 27 H 1.00905 * 110.99990 * 296.04796 * 13 11 10 28 28 H 1.00896 * 111.00269 * 60.00199 * 13 11 10 29 29 H 0.96999 * 119.99494 * 354.72316 * 16 14 11 30 30 H 1.08996 * 110.66786 * 278.15713 * 18 17 16 31 31 H 1.09012 * 110.66719 * 41.28431 * 18 17 16 32 32 H 1.08999 * 110.71938 * 204.22761 * 19 18 17 33 33 H 1.08995 * 110.72229 * 80.94561 * 19 18 17 34 34 H 1.09000 * 110.31091 * 263.03493 * 20 19 18 35 35 H 1.09006 * 110.30707 * 140.87673 * 20 19 18 36 36 H 1.09003 * 109.91168 * 333.51466 * 21 17 16 37 37 H 1.09005 * 109.91493 * 94.60863 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 1 0.7882 -5.0072 0.8405 13 7 0.7293 -5.1181 -1.2567 14 6 2.4552 -6.1297 0.1226 15 8 2.7873 -6.7530 -0.8633 16 7 2.9578 -6.4591 1.3291 17 7 3.7603 -7.5570 1.4580 18 6 5.1176 -7.1725 1.9229 19 6 5.6810 -8.4940 2.5034 20 6 4.4433 -9.1320 3.1749 21 6 3.2306 -8.4834 2.4821 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6249 -2.5571 0.8897 25 1 2.8722 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8906 27 1 0.0244 -4.4001 -1.3329 28 1 1.3492 -5.1021 -2.0525 29 1 2.7528 -5.9143 2.1050 30 1 5.7273 -6.8284 1.0876 31 1 5.0567 -6.4074 2.6970 32 1 6.4580 -8.2911 3.2404 33 1 6.0607 -9.1341 1.7071 34 1 4.4340 -8.9082 4.2416 35 1 4.4391 -10.2101 3.0138 36 1 2.6379 -7.9310 3.2113 37 1 2.6165 -9.2491 2.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686768633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = -18.000801 kcal Electronic energy + Delta-G solvation = -17393.415215 eV Core-core repulsion = 14591.987473 eV Total energy + Delta-G solvation = -2801.427742 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09928 -38.29044 -35.40175 -34.11686 -32.84593 -29.91015 -29.27087 -29.13797 -26.23648 -23.89857 -21.84345 -21.18308 -20.71278 -19.85694 -17.71441 -17.27001 -16.24629 -15.90611 -14.81417 -14.74275 -14.43268 -14.38396 -13.92261 -13.53794 -13.11083 -13.02273 -12.74721 -12.53914 -12.12929 -11.68591 -11.65761 -11.45815 -11.08625 -10.91418 -10.86185 -10.70993 -9.99722 -9.87708 -9.29874 -9.20798 -9.11686 -8.91947 -8.44653 -8.17761 -6.09349 -4.12642 2.81590 3.02155 3.27697 3.32699 3.35085 4.12426 4.38483 4.47606 4.60620 4.84044 4.99124 5.07589 5.19084 5.20405 5.26825 5.44745 5.53013 5.54848 5.58082 5.71831 5.75226 5.78635 5.87552 6.26926 6.45258 6.50990 6.86129 7.37408 7.44089 7.50691 7.59990 7.69702 7.87558 7.92081 8.30191 8.76097 8.93122 9.52280 11.01518 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.004647 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.803488 B = 6024.527756 C = 6523.015717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.080 3.920 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.541 3.459 15 O -0.513 6.513 16 N -0.594 5.594 17 N -0.268 5.268 18 C 0.011 3.989 19 C -0.122 4.122 20 C -0.130 4.130 21 C 0.014 3.986 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.355 0.645 28 H 0.346 0.654 29 H 0.381 0.619 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 -14.511 7.366 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.362 5.362 14 C 0.328 3.672 15 O -0.384 6.384 16 N -0.341 5.341 17 N -0.085 5.085 18 C -0.116 4.116 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.114 4.114 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.171 0.829 28 H 0.160 0.840 29 H 0.220 0.780 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.931 -15.785 6.369 18.379 hybrid contribution 0.770 2.557 1.164 2.913 sum 7.701 -13.228 7.533 17.060 Atomic orbital electron populations 1.69937 1.06017 1.26913 1.50337 1.25008 0.94864 0.99280 0.95101 0.86645 0.79598 0.83033 0.78661 1.20194 1.21195 1.20257 1.21143 0.92984 0.90915 1.51274 0.92778 1.19104 0.93713 0.91073 0.97404 1.22398 0.99882 0.93988 1.01495 1.21432 0.94533 0.91957 0.95737 0.88533 1.58713 1.18468 1.55930 1.03099 1.20839 0.80481 0.84250 0.81630 1.90621 1.58624 1.52753 1.36401 1.45722 1.50973 1.26107 1.11325 1.65835 0.97695 1.02113 1.42841 1.23800 0.90717 0.97346 0.99766 1.22452 0.97270 0.96137 1.00234 1.22391 0.94106 1.00908 0.99487 1.23399 0.97689 0.96805 0.93474 0.92807 0.96298 0.96337 0.92692 0.92541 0.82927 0.84030 0.78019 0.89224 0.92677 0.90565 0.90302 0.91174 0.90560 0.92612 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.70 4.78 -26.73 -0.13 -2.82 16 11 C 0.08 1.37 3.21 -68.87 -0.22 1.15 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 13 N -0.83 -14.48 8.94 -5.65 -0.05 -14.54 16 14 C 0.54 9.45 7.18 -10.99 -0.08 9.37 16 15 O -0.51 -10.75 16.58 5.56 0.09 -10.65 16 16 N -0.59 -8.42 4.74 31.22 0.15 -8.27 16 17 N -0.27 -3.58 5.15 -110.08 -0.57 -4.15 16 18 C 0.01 0.13 6.85 -1.90 -0.01 0.11 16 19 C -0.12 -1.02 7.06 -24.87 -0.18 -1.19 16 20 C -0.13 -1.02 6.93 -25.38 -0.18 -1.20 16 21 C 0.01 0.15 6.92 -2.75 -0.02 0.13 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.36 6.14 7.55 -39.29 -0.30 5.84 16 28 H 0.35 6.14 8.58 -39.29 -0.34 5.80 16 29 H 0.38 4.53 8.74 -185.16 -1.62 2.91 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -31.96 307.05 -8.60 -40.56 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.21 Total: 8.56 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.35 Total: -7.10 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.27 Total: -52.16 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.96 -8.60 -40.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686768633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.561 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds