Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99534 * 2 1 4 4 H 1.48498 * 109.47260 * 239.99985 * 3 2 1 5 5 H 1.48505 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46827 * 120.00297 * 3 2 1 7 7 C 1.37875 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46756 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47220 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46747 * 304.99892 * 11 10 9 13 13 N 1.46904 * 109.47177 * 64.99660 * 11 10 9 14 14 C 1.50693 * 109.47536 * 184.99909 * 11 10 9 15 15 O 1.21279 * 120.00012 * 259.99752 * 14 11 10 16 16 N 1.34781 * 120.00151 * 79.99415 * 14 11 10 17 17 N 1.36598 * 119.99755 * 174.99423 * 16 14 11 18 18 C 1.48532 * 110.99837 * 117.91915 * 17 16 14 19 19 C 1.54940 * 103.22730 * 159.71645 * 18 17 16 20 20 C 1.54592 * 102.91977 * 322.58502 * 19 18 17 21 21 C 1.47908 * 110.99946 * 235.31173 * 17 16 14 22 22 H 0.96993 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47379 * 60.00454 * 9 7 2 24 24 H 1.08996 * 109.47223 * 299.99827 * 9 7 2 25 25 H 1.08999 * 109.47598 * 59.99925 * 10 9 7 26 26 H 1.09001 * 109.47238 * 299.99512 * 10 9 7 27 27 H 1.00905 * 110.99990 * 296.04796 * 13 11 10 28 28 H 1.00896 * 111.00269 * 60.00199 * 13 11 10 29 29 H 0.96999 * 119.99494 * 354.72316 * 16 14 11 30 30 H 1.08996 * 110.66786 * 278.15713 * 18 17 16 31 31 H 1.09012 * 110.66719 * 41.28431 * 18 17 16 32 32 H 1.08999 * 110.71938 * 204.22761 * 19 18 17 33 33 H 1.08995 * 110.72229 * 80.94561 * 19 18 17 34 34 H 1.09000 * 110.31091 * 263.03493 * 20 19 18 35 35 H 1.09006 * 110.30707 * 140.87673 * 20 19 18 36 36 H 1.09003 * 109.91168 * 333.51466 * 21 17 16 37 37 H 1.09005 * 109.91493 * 94.60863 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 1 0.7882 -5.0072 0.8405 13 7 0.7293 -5.1181 -1.2567 14 6 2.4552 -6.1297 0.1226 15 8 2.7873 -6.7530 -0.8633 16 7 2.9578 -6.4591 1.3291 17 7 3.7603 -7.5570 1.4580 18 6 5.1176 -7.1725 1.9229 19 6 5.6810 -8.4940 2.5034 20 6 4.4433 -9.1320 3.1749 21 6 3.2306 -8.4834 2.4821 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6249 -2.5571 0.8897 25 1 2.8722 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8906 27 1 0.0244 -4.4001 -1.3329 28 1 1.3492 -5.1021 -2.0525 29 1 2.7528 -5.9143 2.1050 30 1 5.7273 -6.8284 1.0876 31 1 5.0567 -6.4074 2.6970 32 1 6.4580 -8.2911 3.2404 33 1 6.0607 -9.1341 1.7071 34 1 4.4340 -8.9082 4.2416 35 1 4.4391 -10.2101 3.0138 36 1 2.6379 -7.9310 3.2113 37 1 2.6165 -9.2491 2.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686768633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = -41.740223 kcal Electronic energy + Delta-G solvation = -17394.444634 eV Core-core repulsion = 14591.987473 eV Total energy + Delta-G solvation = -2802.457161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27428 -39.42953 -37.00050 -35.18053 -34.82618 -31.68951 -30.36950 -29.91266 -27.87115 -25.58937 -22.96393 -22.29378 -21.82245 -21.26931 -19.04809 -18.51234 -18.12950 -16.80780 -16.51359 -16.05043 -15.90205 -15.82309 -15.09488 -14.85692 -14.56028 -14.13225 -14.01284 -13.71951 -13.43624 -13.38391 -12.93112 -12.66750 -12.53928 -12.33203 -12.19915 -11.80728 -11.70463 -11.48990 -11.31664 -10.75245 -10.55331 -10.28576 -9.89571 -9.64808 -8.21066 -6.31482 1.40253 1.41718 1.49705 1.62002 1.71392 2.40241 3.12630 3.28566 3.65966 3.73372 3.78132 4.00167 4.06490 4.11961 4.22408 4.23070 4.49820 4.65096 4.65731 4.81361 4.83602 4.89909 4.97280 5.08094 5.12419 5.21626 5.46615 5.64442 5.65811 5.80750 6.04191 6.19936 6.22865 6.44779 6.48530 6.83793 7.37633 7.52931 8.89500 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.004647 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.803488 B = 6024.527756 C = 6523.015717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.089 3.911 12 H 0.112 0.888 13 N -0.830 5.830 14 C 0.544 3.456 15 O -0.553 6.553 16 N -0.580 5.580 17 N -0.300 5.300 18 C 0.008 3.992 19 C -0.116 4.116 20 C -0.122 4.122 21 C 0.011 3.989 22 H 0.264 0.736 23 H 0.004 0.996 24 H 0.003 0.997 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.355 0.645 28 H 0.344 0.656 29 H 0.394 0.606 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.271 -14.793 8.855 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.028 4.028 12 H 0.130 0.870 13 N -0.362 5.362 14 C 0.330 3.670 15 O -0.428 6.428 16 N -0.326 5.326 17 N -0.118 5.118 18 C -0.119 4.119 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.116 4.116 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.170 0.830 28 H 0.158 0.842 29 H 0.234 0.766 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.086 -16.075 7.906 19.655 hybrid contribution 0.409 2.607 0.724 2.737 sum 8.495 -13.468 8.630 18.112 Atomic orbital electron populations 1.70051 1.07477 1.27839 1.51261 1.25850 0.95712 1.02918 0.94720 0.85608 0.78385 0.78688 0.79010 1.19673 1.20815 1.19227 1.21592 0.93351 0.92471 1.51010 0.92721 1.18973 0.94020 0.91891 0.95865 1.22144 0.98804 0.93649 1.01438 1.21348 0.94523 0.90770 0.96170 0.86999 1.58727 1.18430 1.55760 1.03233 1.20734 0.80248 0.83893 0.82082 1.90603 1.60083 1.54206 1.37888 1.45469 1.50150 1.26356 1.10669 1.65803 0.98666 1.02152 1.45157 1.23838 0.89351 0.99202 0.99527 1.22458 0.97968 0.94452 1.00572 1.22393 0.92307 1.01227 1.00166 1.23460 0.98916 0.96152 0.93070 0.92716 0.97800 0.97814 0.91598 0.93668 0.82981 0.84249 0.76554 0.90941 0.91608 0.88275 0.90783 0.89223 0.89523 0.91556 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -29.80 9.11 25.60 0.23 -29.57 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.44 4.74 29.85 0.14 1.58 16 10 C -0.12 -4.67 4.78 30.59 0.15 -4.53 16 11 C 0.09 3.00 3.21 44.17 0.14 3.14 16 12 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 13 N -0.83 -29.02 8.94 -171.80 -1.54 -30.55 16 14 C 0.54 18.70 7.18 87.65 0.63 19.33 16 15 O -0.55 -23.27 16.58 -3.03 -0.05 -23.32 16 16 N -0.58 -15.79 4.74 -173.53 -0.82 -16.61 16 17 N -0.30 -7.68 5.15 -502.17 -2.59 -10.27 16 18 C 0.01 0.17 6.85 86.65 0.59 0.76 16 19 C -0.12 -1.65 7.06 31.80 0.22 -1.42 16 20 C -0.12 -1.57 6.93 31.47 0.22 -1.35 16 21 C 0.01 0.22 6.92 86.44 0.60 0.81 16 22 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 23 H 0.00 0.19 6.87 -2.39 -0.02 0.17 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.35 12.39 7.55 -89.69 -0.68 11.71 16 28 H 0.34 12.35 8.58 -89.70 -0.77 11.58 16 29 H 0.39 8.67 8.74 -215.50 -1.88 6.79 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 1.09 7.92 -2.39 -0.02 1.08 16 37 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -67.95 307.05 -1.55 -69.50 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -2.25 Total: 30.32 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 3.39 Total: -10.41 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.66 Total: -111.20 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -67.95 -1.55 -69.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686768633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.757 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds